Zhep004979.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439380.1:15300436-15303205[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00022 0.012 16.4 2.9 2 23 156 178 155 178 0.96 2 16 8.3e-06 0.00045 20.9 0.6 1 23 187 210 187 210 0.98 3 16 0.35 19 6.3 0.4 3 23 224 245 223 245 0.96 4 16 0.0016 0.085 13.7 0.8 1 23 254 277 254 277 0.97 5 16 0.0048 0.26 12.2 0.1 1 23 289 312 289 312 0.97 6 16 3.5e-05 0.0019 18.9 0.3 2 23 340 362 339 362 0.96 7 16 0.0018 0.1 13.5 1.1 2 23 372 394 371 394 0.96 8 16 0.01 0.55 11.2 0.3 3 19 401 417 399 420 0.91 9 16 0.00055 0.03 15.2 0.2 2 21 425 444 424 447 0.94 10 16 0.0017 0.091 13.6 3.0 3 23 458 479 457 479 0.97 11 16 2.2e-05 0.0012 19.6 2.2 1 23 484 507 484 507 0.96 12 16 0.089 4.9 8.2 7.7 1 23 518 541 518 542 0.96 13 16 1.2 63 4.7 6.8 1 23 564 587 564 588 0.94 14 16 6.4e-05 0.0035 18.1 1.2 2 23 622 643 621 643 0.97 15 16 0.011 0.61 11.0 0.1 1 23 709 731 709 731 0.97 16 16 0.19 10 7.2 3.0 1 23 737 760 737 760 0.96
Sequence Information
- Coding Sequence
- ATGTGGGAAGCGATGGCAGACCGTAAGGATCCAACCTCCTTCCTCCCCGAAGAGCCGATGGTGTACGagttcaagaagaagaagaaaaagaagaagcggAAGCATCACCATGAGGACCCGTTCAAAGGGCTGGACGATGTCAACCCGTTCGCCACTCAAGTGATCATTGAGAAGTGCTTGGAGGACGAGGATGACGGTGATGTGCCGGAGATTTTTGATCCAGAAGTGATGGTCAAGGTGGAGAATATCGAGGTGGAGTTGGATTTTGATGGGTTTGGCGACGACAACGACATGAAGATGGAGGACGCACAAAGCGAGGACAGCCAAGAGCAAGCGGTCAACATCAGCCGGAACCAAAAGAACCAAGACGCAGTCCTGCTGACCTTCGAAAACATCGTCAGCAAAAACTCCGTCGTCAACATCaagaaagaaagagaaaagGAAAAGGAGGACAAGAAAATGCTcaaatgtgacatttgccaTCTAGTTTTTTCTACGAGCAGAACTTTGTACATGCACCAGCGGAACAAGCACAAAGCTTTCAGGAGCGATAATATTTACACATGCGAAGACTGTGGAATGTCCTACGAACAGAAGAACAGCCTAGTGGCCCACAGACGGCGGAAACACGGACCGAACACTTCAAAAGATAGCATGGAGGAGGTTGCCTGTGAAATCTGTGCGCTGGTCTTCAAGGGTTCCATGCGACTACGTATGCACAAGCAAAGGAAACACGGGGAGTATCAGGAAAGCTTCCGTTATGAGTGCTACGAATGCGGACTGTCGTATGACAAATACACAAGCCTCGTTGCCCATACTAAAAGAAAGCATACACTCAAGcggaagaaaaagaagataatttggTACAACTGTCCGTTGTGTCCCAAGATCTACGGGGCAAGAGATGCCTATGTGAGGCATATACAACGGACACATAATAAGGAGGATGACGTGAAGGTACCAACAGAGTTGCTTGGGAACCTCAACCAAGCGAATTTCAATCAATCTGGAGAGATACCTTGCAAGGAATGCCCCCTAGTGTTTTCGAGCTTGATGTACTTAAAGTTGCACATGAGACGAAAGCATAACGCTTACAAAGACGAGTTCAGACTCAAGTGCAATATTTGCAAGTTATCGTATGATAAAGTTGAGAGCTTGAAGCGTCATGTCAACAGAAAGCACAGGAGTACGGGATTGTTTTGTGACGTGTGCAATAAGTCATTTAGTACCATGGATGCGTACGTTAATCATTCACATGTGAAACCGATAGTAGAATGCACGATCTGTGGACTGATATTTGCCTCCGCTGGAGGTCTGCAGAAACATTTACGGTGCACTCATAAGTTAGATATGGGTCCAATGACGGTGTTTTGTACGATTTGCAAAGAAGGTTTCCATGAAAACAGGCAACTGAAAACTCACATGAGAAAGGTGCACCTAAAAATAACGTACCCCTGCCTGATATGCCAGAAGAACTTCAAAACGAAGGAGAGCTACCGAAGACATATGGTCCGGTTTCATCCAACCAATTTCCCAGAGAAAACCCCTGACCATAAGTGTAATCTGTGCACAAGTGCCTTTACAAACGAATTTGACCTATGCCGTCATTTTAATACAATGCACCACGATGAGACCAACATCAAAAAGGAGGCTGACGATGACAAACCAAGTGAGGACCAGAAACAAACTTTCCAATGCACTAAATGCCCGACCATTTGCCATACTTGGGATGAGACACGTAAGCATTATGAACAATATCATCATATTACGGAAGACACACAATGTCAGGCCTGCGGCCAATTCATGCCAAACGGAGAGCTGCCAAAGCATATGAAAATGGTCCACCCCATAGAAGTAGACATGAAATGCCCCTATTGCGAGTATAAAACAACCTCCAAAGTCAGCCTGACGCAACACATGTTGAGGCACCAAAATGCTGCATCGTTGAACTGTGATTATCCGAACTGTCGGTACAAGAGTTATTTCGAAGCGGCCATGGATAAGCACAAAAGAAAACATAAGGAACAGGGTGTTAAATTGCAATGCTCCCATTGCCCGTTCCAAACGATGAATAAATACATTCTAAGATATCACGAAGAGGAACATGTGACTGGTAAGAAGAGGTACGTTTGCAACCAATGTGATTATGCCACAATTTTACCGGCAAACCTAGTTCAACATAAGTATAAGCACTCTACGATAAAAAGGTTCAAGTGTGAATACTGCCCGTTTGCGACTAAGTATAATACATCTTTAAGATTTCATGTGAAGAAGAAGCATTGTGATCTACCGTTCTTAGGTAATGCTAGTTCTACCGTAGATGATAATGTtagcaataaagtttaa
- Protein Sequence
- MWEAMADRKDPTSFLPEEPMVYEFKKKKKKKKRKHHHEDPFKGLDDVNPFATQVIIEKCLEDEDDGDVPEIFDPEVMVKVENIEVELDFDGFGDDNDMKMEDAQSEDSQEQAVNISRNQKNQDAVLLTFENIVSKNSVVNIKKEREKEKEDKKMLKCDICHLVFSTSRTLYMHQRNKHKAFRSDNIYTCEDCGMSYEQKNSLVAHRRRKHGPNTSKDSMEEVACEICALVFKGSMRLRMHKQRKHGEYQESFRYECYECGLSYDKYTSLVAHTKRKHTLKRKKKKIIWYNCPLCPKIYGARDAYVRHIQRTHNKEDDVKVPTELLGNLNQANFNQSGEIPCKECPLVFSSLMYLKLHMRRKHNAYKDEFRLKCNICKLSYDKVESLKRHVNRKHRSTGLFCDVCNKSFSTMDAYVNHSHVKPIVECTICGLIFASAGGLQKHLRCTHKLDMGPMTVFCTICKEGFHENRQLKTHMRKVHLKITYPCLICQKNFKTKESYRRHMVRFHPTNFPEKTPDHKCNLCTSAFTNEFDLCRHFNTMHHDETNIKKEADDDKPSEDQKQTFQCTKCPTICHTWDETRKHYEQYHHITEDTQCQACGQFMPNGELPKHMKMVHPIEVDMKCPYCEYKTTSKVSLTQHMLRHQNAASLNCDYPNCRYKSYFEAAMDKHKRKHKEQGVKLQCSHCPFQTMNKYILRYHEEEHVTGKKRYVCNQCDYATILPANLVQHKYKHSTIKRFKCEYCPFATKYNTSLRFHVKKKHCDLPFLGNASSTVDDNVSNKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -