Zhep005157.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439380.1:20393170-20399173[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.02 1.1 10.2 3.9 2 23 243 265 242 265 0.94 2 14 0.051 2.8 9.0 3.5 1 23 270 292 270 292 0.97 3 14 2.6e-05 0.0014 19.3 2.7 1 23 296 318 296 318 0.98 4 14 0.045 2.5 9.1 0.3 1 23 331 354 331 354 0.95 5 14 0.00022 0.012 16.4 0.7 1 23 358 380 358 380 0.99 6 14 0.55 30 5.7 0.3 1 23 391 414 391 414 0.88 7 14 0.0029 0.16 12.9 0.0 2 23 421 444 420 444 0.94 8 14 0.0029 0.16 12.9 0.0 2 23 467 490 466 490 0.94 9 14 0.0029 0.16 12.9 0.0 2 23 513 536 512 536 0.94 10 14 0.0029 0.16 12.9 0.0 2 23 559 582 558 582 0.94 11 14 0.0029 0.16 12.9 0.0 2 23 605 628 604 628 0.94 12 14 0.0029 0.16 12.9 0.0 2 23 651 674 650 674 0.94 13 14 0.0029 0.16 12.9 0.0 2 23 697 720 696 720 0.94 14 14 0.0029 0.16 12.9 0.0 2 23 743 766 742 766 0.94
Sequence Information
- Coding Sequence
- ATGGTGGGTGTGAATATGAGAAATGTTGTATCACATCTTGCAAACGGCACTCTGGCCGAAGAGCTGTGCCGGGTGTGTTTATCTCCGCTCGAAGAAAACTGCGAGAATGTATTCACCGAGATCTGCAAGGAGGAAAAAGCCTACTGCATCGCTGATATTCTCGAAACTATTTGCCAGATAAAGGTCAGCGAAGAAGATAACTACTGCGTCTGTTACAACTGCTTTCACACAGCCTCGGTGGCATACAAGTTTTTCACAACGTGTCGGAGTACAGAATCTATCCTCAGTTTCTATGTGGAGAGACTAGAGAACCACGTGGAACTACTGCAAGATTCTGTTGAAGATGCAAATGTCGGAGATAACATCTGTATCTCATTACCGTTGCTAGAGGCAGCAAATACATTTGACTACAATGTTGGATTCATACCTGAAAGACAATCGACAAACCATAATGAGAGTGAACCGTTATCAGCCGACGATGACAATGAAGTAGAAGAAAcactgaaaaataaaactgacGAAGACATAGTAGTTGTATTAGATGAAAACGGAAAAAGAAACTATTTCAAATTGTACGATTGTTCATTAGAGCCGATAAAAAAGGATGAGAAGAAAAGCTGCGAAATGGTGTTCCGGAACTCCGAAGTTGGCAAAACTGTTATTGATTCAATAAAAGAGCGGAAGCCAAAGAAGGAGAGAAAGGTGCGATCTCCGATGCTCTACCTTAACTGCAGCCAATGCTCCGTGAAATACCGGTTCCACTCTAAGTTGAAGAAGCACATGATGCAAGACCACGGAATCTATCTTTACATTTGCAAGCTGTGCAAGTTCACAACGGAACGTCAGAGGGAATACCACGAGCACATGCAGTTGCACATTGATGTCTACACGTGTGACGACTGTGGTGTGTGCTTCAAGAAGCGCACCACGCTCATACAACATCTTAAGCTGCATCAGGACTCCAACGTTGTCAATGTTAAGGAGGGAGCCCACGTATGCGAGATATGCGGTGCGATCCTCGCCGACGCCTTGCACCTGCGGGAGCACTACGACCGCAAGCACGACAAGAAGTATACGTGCTTCTACTGCGGCCGGAGCTACAAGGGCGAGGGGCCGTTCGAATCGCACATTCGGAAACACGAGCTATGCACCGGGAAGGGAGATGAGAAGCACTCCTGTCGCGTGTGCCAGCTGAGCTTCGCGACGGCGCTGCGGCTCGACGCGCACGTGGTGTCGACGCACGGCGGCGCGCCCCCGCTGCGATGTACCGCGGCGGGCTGCGAGCGCGTGTTCCGCAGCGAGGGGGCGCTCAGGGCGCACGCTAAGGCGCATAGCAGCGCGCACTGCTGCGAGGTGAGTGCACACGTGGTGTCGGCGCACGGCGGCGCGCCCCCGCTGCGATGTACCGCGGCGGGCTGCGAGCGCGTGTTCCGCAGCGAGGGGGCGCTCAGGGCGCACGCTAAGGCGCATAGCAGCGCGCACTGCTGCGAGGTGAGTGCACACGTGGTGTCGGCGCACGGCGGCGCGCCCCCGCTGCGATGTACCGCGGCGGGCTGCGAGCGCGTGTTCCGCAGCGAGGGGGCGCTCAGGGCGCACGCTAAGGCGCATAGCAGCGCGCACTGCTGCGAGGTGAGTGCACACGTGGTGTCGGCGCACGGCGGCGCGCCCCCGCTGCGATGTACCGCGGCGGGCTGCGAGCGCGTGTTCCGCAGCGAGGGGGCGCTCAGGGCGCACGCTAAGGCGCATAGCAGCGCGCACTGCTGCGAGGTGAGTGCACACGTGGTGTCGGCGCACGGCGGCGCGCCCCCGCTGCGATGTACCGCGGCGGGCTGCGAGCGCGTGTTCCGCAGCGAGGGGGCGCTCAGGGCGCACGCTAAGGCGCATAGCAGCGCGCACTGCTGCGAGGTGAGTGCACACGTGGTGTCGGCGCACGGCGGCGCGCCCCCGCTGCGATGTACCGCGGCGGGCTGCGAGCGCGTGTTCCGCAGCGAGGGGGCGCTCAGGGCGCACGCTAAGGCGCATAGCAGCGCGCACTGCTGCGAGGTGAGTGCACACGTGGTGTCGGCGCACGGCGGCGCGCCCCCGCTGCGATGTACCGCGGCGGGCTGCGAGCGCGTGTTCCGCAGCGAGGGGGCGCTCAGGGCGCACGCTAAGGCGCATAGCAGCGCGCACTGCTGCGAGGTGAGTGCACACGTGGTGTCGGCGCACGGCGGCGCGCCCCCGCTGCGATGTACCGCGGCGGGCTGCGAGCGCGTGTTCCGCAGCGAGGGGGCGCTCAGGGCGCACGCTAAGGCGCATAGCAGCGCGCACTGCTGCGAGGTGAGTGCACACGTGGTGTCGGCGCACGGCGGCGCGCCCCCGCTGCAGTGCGCCGCAGGGGGCTGCGCGCGCGCGTTCTGCAGCGAGGCAAAACAGTACCGGGAGGAATATGCAGGGGAAAGGTAA
- Protein Sequence
- MVGVNMRNVVSHLANGTLAEELCRVCLSPLEENCENVFTEICKEEKAYCIADILETICQIKVSEEDNYCVCYNCFHTASVAYKFFTTCRSTESILSFYVERLENHVELLQDSVEDANVGDNICISLPLLEAANTFDYNVGFIPERQSTNHNESEPLSADDDNEVEETLKNKTDEDIVVVLDENGKRNYFKLYDCSLEPIKKDEKKSCEMVFRNSEVGKTVIDSIKERKPKKERKVRSPMLYLNCSQCSVKYRFHSKLKKHMMQDHGIYLYICKLCKFTTERQREYHEHMQLHIDVYTCDDCGVCFKKRTTLIQHLKLHQDSNVVNVKEGAHVCEICGAILADALHLREHYDRKHDKKYTCFYCGRSYKGEGPFESHIRKHELCTGKGDEKHSCRVCQLSFATALRLDAHVVSTHGGAPPLRCTAAGCERVFRSEGALRAHAKAHSSAHCCEVSAHVVSAHGGAPPLRCTAAGCERVFRSEGALRAHAKAHSSAHCCEVSAHVVSAHGGAPPLRCTAAGCERVFRSEGALRAHAKAHSSAHCCEVSAHVVSAHGGAPPLRCTAAGCERVFRSEGALRAHAKAHSSAHCCEVSAHVVSAHGGAPPLRCTAAGCERVFRSEGALRAHAKAHSSAHCCEVSAHVVSAHGGAPPLRCTAAGCERVFRSEGALRAHAKAHSSAHCCEVSAHVVSAHGGAPPLRCTAAGCERVFRSEGALRAHAKAHSSAHCCEVSAHVVSAHGGAPPLRCTAAGCERVFRSEGALRAHAKAHSSAHCCEVSAHVVSAHGGAPPLQCAAGGCARAFCSEAKQYREEYAGER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -