Zhep013215.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439386.1:14609155-14614076[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00039 0.021 15.6 0.5 2 23 39 60 38 60 0.96 2 18 0.0012 0.065 14.1 0.6 3 23 66 86 65 86 0.97 3 18 0.35 19 6.3 0.7 1 23 93 116 93 116 0.88 4 18 0.012 0.63 11.0 1.4 1 23 122 145 122 145 0.96 5 18 0.082 4.5 8.3 2.1 1 23 151 174 151 174 0.94 6 18 0.00077 0.042 14.7 0.2 3 23 182 202 181 202 0.97 7 18 0.0016 0.089 13.7 5.5 1 23 208 230 208 230 0.98 8 18 0.00048 0.026 15.4 5.2 1 23 236 258 236 259 0.96 9 18 1.8 99 4.1 2.0 1 23 360 383 360 383 0.90 10 18 0.94 51 5.0 0.0 2 23 406 428 405 428 0.91 11 18 0.14 7.4 7.6 6.7 1 23 450 472 450 472 0.95 12 18 0.00012 0.0068 17.2 0.4 1 23 476 498 476 498 0.98 13 18 0.00028 0.015 16.1 0.7 1 23 503 526 503 526 0.95 14 18 2.6e-05 0.0014 19.3 2.7 1 23 532 555 532 555 0.97 15 18 0.13 7.2 7.7 1.8 1 23 562 585 562 585 0.94 16 18 0.0016 0.085 13.7 2.6 1 23 591 613 591 613 0.95 17 18 1.8e-06 9.7e-05 23.0 0.6 1 23 619 641 619 641 0.99 18 18 2.1e-07 1.2e-05 25.9 2.7 1 23 647 669 647 670 0.96
Sequence Information
- Coding Sequence
- ATGCGATGTTTAGACCAATTCAAACAGCACCTAAATATTGAACATGGTATTAAGTTAAACCCGGAATACAGCGACGGTGTTGTTCCATTCGTTTTGAAGGACAAAGGCTGCCTGCCTTGTGTCAAATGCGACGAAACGTTCGAATTGTTCTCCACATTGAACACGCACATGAACAAACACGAACCCAGTAATATTTGCTTCCACTGCGGCAAGAGTTTCATTGCACCACTTCGACTAAAAGCCCACCTGCTTACTCATGAGAACTCTCTTCGGAACTATGAATGCAGTCGATGCCCCGAGGTTTTCCAAAGTAGGCTGGCGAGGAACAACCACTTTAACCAGTCACATTCAATTAGGAACAGATACAAATGTCCGTACTGTCAAGATACGTTCAAAAGCTACCCGGGTAGGCTCAAGCATATGAAAGAAACACACGATAAGAAAGTTGAATACGCGTGTCACTTATGTCCGGCCACCTTCGCGATGTGCAACCAGCGAACGCGCCACATATCCCAAGTGCACGTTAAATTAAAGAAGGTTTTCTGCGAGCTGTGCCCCATGGCTTTTGTGACCATATTTCAATTGAAGAATCACATGATAAAGCATGGAGGCGAAAGGAAATTTAAATGCGAAGTCTGCCACAAGGCCTTCGCCAGGAAAAAGACTCATAAAGAGCACATGAAGATCCATAACAATATCAGAAATTACGTGTGCCAGTATTGCAACAGTGCGTTCGTTCAGAACTGTAGTCTCAAAAGTCATTTAAAGACACATCACCCAAATGCTGAGactcacggcgaggCGTCTCGGAGAGAAGTTCGCCGAGACTTCTCGGCGAGAACAAGCAATCTATCCACACTCTCATTTTTCTCACTCGTGTTCTGGATCCCATCAGgacGAAAACTCAAAGAAGTACAGATTAAGACGGAGCCCTCCGATGAGGacttgccgccgccgccggggcgAGGCGTCTCCGAGCGAGAGATAGAGAGCGACAAACGGGAGACGTTCAGGAGAAACATTAGCATTATCATAGAGTCCTGCACGGCGTGTCCGTTCAAATATCGCAGAGGAGCGTACCTCTGCTTTTTTTGCAACCAAACTTTTCTGGAGCCGGAAAAACTGCGGCATCACACTCTAGCGCAGCACTCGGAGGTCAAAGAGTTTACCAAACCGAGAAAGTACGAACCCTTAAAGGTAGATTTCCTAGAAACCACTTGCCGGCTTTGCGGCGACGCCATATCGGACTACGACACTCTAAAAGCTCACTTGACTGCGGCCCACGGGAAGATAATCGACTGCTCCGCCGGAGACAGCGTGCTGCCCTACAAACTGCTCAAAGACGAGCACTGCTGTCAGATCTGCGGGAAACGGTACGAGATGTTCTTGAGCCTGCACAAACACATGAACGACCACTACGAGCATTTTATCTGCGAGACGTGCGGCAAGGGGTTTGCGACGTCTCAGAGAATGCTCAACCACGTCCGGACGCACGAGAGAGGCTCGTTCCCCTGCAAACAGTGCTCCGAAACCTTCCCATCCTACTCCTCGCTGCACGCTCACGTCGCTAAAGTCCACCGCTCAAACAACCGCTACAAATGCCCCATTTGCGGGGAGAAATTCTCGTCTTACAAGCACAGGCTGAAACACCTAAGAAACGTTCATGGAGAGAAAACAGCTCAGTTCCCTTGTCCGTCCTGCCCAAGAGTTTTCGACCTGTGCAGTCGACGGACGTCGCATATCAGGTTCCAGCACCTGCAGGAACGGAATCACATATGCTCCACGTGTGGAATGAAGTTCTTCACCAAGTACGAGCTTCAGGAGCACTCTATCAAACATGGAGGCGAGAGAATATACCAATGTGACGTGTGCAAGAAGGCCTACGCGCGCTTAAAAACTTTGAGAGAACATATGAGAATTCACAACAACGATCGACGGTTCGTTTGTCCTATCTGCGGACAATCCTTCATTCAGAATTGTAGTCTAAAGCAACATATGCGGGTGCACCATCCGGCGCACTTGAAAAATGTATTCTGA
- Protein Sequence
- MRCLDQFKQHLNIEHGIKLNPEYSDGVVPFVLKDKGCLPCVKCDETFELFSTLNTHMNKHEPSNICFHCGKSFIAPLRLKAHLLTHENSLRNYECSRCPEVFQSRLARNNHFNQSHSIRNRYKCPYCQDTFKSYPGRLKHMKETHDKKVEYACHLCPATFAMCNQRTRHISQVHVKLKKVFCELCPMAFVTIFQLKNHMIKHGGERKFKCEVCHKAFARKKTHKEHMKIHNNIRNYVCQYCNSAFVQNCSLKSHLKTHHPNAETHGEASRREVRRDFSARTSNLSTLSFFSLVFWIPSGRKLKEVQIKTEPSDEDLPPPPGRGVSEREIESDKRETFRRNISIIIESCTACPFKYRRGAYLCFFCNQTFLEPEKLRHHTLAQHSEVKEFTKPRKYEPLKVDFLETTCRLCGDAISDYDTLKAHLTAAHGKIIDCSAGDSVLPYKLLKDEHCCQICGKRYEMFLSLHKHMNDHYEHFICETCGKGFATSQRMLNHVRTHERGSFPCKQCSETFPSYSSLHAHVAKVHRSNNRYKCPICGEKFSSYKHRLKHLRNVHGEKTAQFPCPSCPRVFDLCSRRTSHIRFQHLQERNHICSTCGMKFFTKYELQEHSIKHGGERIYQCDVCKKAYARLKTLREHMRIHNNDRRFVCPICGQSFIQNCSLKQHMRVHHPAHLKNVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -