Zhep004017.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439379.1:29585273-29587591[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.7e-06 0.00015 22.5 3.5 1 23 9 32 9 32 0.95 2 19 8.5e-05 0.0046 17.7 0.1 2 23 38 60 37 60 0.95 3 19 2.5e-05 0.0013 19.4 0.2 2 23 69 91 69 91 0.97 4 19 1.1e-05 0.00061 20.5 3.1 3 23 99 120 97 120 0.93 5 19 0.00012 0.0063 17.3 0.4 2 23 128 150 127 150 0.94 6 19 1.9e-06 0.0001 22.9 4.0 2 23 158 180 157 180 0.97 7 19 3e-05 0.0017 19.1 1.7 1 23 186 209 186 209 0.97 8 19 4.3e-05 0.0023 18.7 0.3 1 23 231 254 231 254 0.98 9 19 1.1e-05 0.00058 20.6 0.6 1 23 289 312 289 312 0.98 10 19 6.2 3.4e+02 2.4 2.2 2 21 320 339 319 340 0.92 11 19 0.0063 0.34 11.8 0.8 2 23 349 371 349 371 0.95 12 19 0.004 0.22 12.4 5.3 1 23 397 420 397 420 0.97 13 19 0.00023 0.013 16.4 1.3 2 23 427 449 426 449 0.96 14 19 0.00013 0.0074 17.1 2.2 2 23 456 478 455 478 0.94 15 19 0.0091 0.5 11.3 2.2 1 23 484 507 484 507 0.97 16 19 0.31 17 6.5 5.0 2 23 515 537 515 537 0.95 17 19 0.0058 0.32 11.9 1.5 1 23 544 567 544 567 0.97 18 19 0.02 1.1 10.3 2.3 1 23 574 597 574 597 0.91 19 19 0.021 1.2 10.2 2.7 3 23 612 633 611 633 0.91
Sequence Information
- Coding Sequence
- ATGTCACAGCCCTGCTTAGACAACTTTATCTGTGACTACTGTAATAGGAGCTTTACTAGGAAATACAACCTCAGGATTCACATTGAAAACTGCCACTTGAACACTGTTACTGTTTGTAACATCTGTGATCAAACATTTGGCAGCCCGAGTGGCCTACAGCTTCATCTAAGCAGAGGTCATAATAGAAACTATGAGGGGTTCCCTGAATGTGACATTTGTGGAcgaatatttaaaagaaagcaGAACATTGTGTCCCATATGATTACCATACACTTGCAAGGGAATGAGATCAATTGTCAGCTGTGTGACAAGAAATTCACAACACAAAGAAATTTAAAACGACACATTCACCAAATTCATAATCCCGATTTTTCATACTTGGAATGTGATGATTGCAGCAAGATTTTCAAAGGAAAGCACTCACTCATTGCTCATATCCAGGCTACTCATAACATTTCCAGGTACTCGTCCAAGTGCCATATATGTCAAAAAGTATACACAAATAAGAGAAATTTGAAAAGGCACATTGAGACTTTCCATGGTGAAAAGGGGGAGTTTAAATGCTCTCTCTGTCCAAAGATCTACACATCGAATCAAAGTTTACGACGACACTCCAGGGTTCGCCACAGACCTGGAAACCTGATTAGACCAAGGGtcttttatcaaaataattacAGACAAAGCTACAAGTATACTTGTGAGAAATGCGACAAATCCTTTGGCGAAGAACCTTTATTGAGACAGCACATAAAATCGGAACATTCATTTATAACTTTCTACAAATACTGCAAGACCAGTCTCCTAAAACAAGAGTCTCAGAAAAGAAATTATGCAGTAGCAGAGCTGCCTAAAGGAATCGACACTTACACTTGTGAGTATTGCAACAGTGCTTTTACAAATGTCTATGAGTTGAAGGACCACATGAGGATCAATCACGACAAAGAATACTGCCTCTCTACCTGTAATGTGTGCTTCAACAAATTCCACAGCAAAGAAACCATGTCAGACCACAAGAAGATGTGCCTACCTCCTCCCAATGCAAACTCTTGCAATTACTGTGATAAACTATTCACCGATATTAGCAGCCTGGAGTTCCATACAAGAATCTTCCATCCACAATCTCAAATTGCTGACTGTGACATCACTTCGACAAACCAAGACGAAAACGCCGAAGATACCAACTCTATCTTCAAATGCGTCCATTGTGACAGAGTTTACTATAGCGACAGGTCTTTGAAGCATCACATTAAGCTAAAACACACCACAGACGAGGTCGTAGAATGCAAACAGTGCGGCAAAATATGCAACAATAAGTATTACCTAGCTAGTCACACTAAGATCGTGCACTCTGACAACTCGTGGTCAAAATGCGACTATTGCGAGAAACAATTCAAATCCAAGCGAAATATTCGGCGACACATTGAATACACGCATCTCGGCATGCAAAGATACAAATGTATAGAGTGTGAGACGTTGTTTAAAGAGAAAAGGAGTCTCAGGAAACACGTGAGAACTAAGCACGCCGAGTCGACCGCCTTCCCGCAGTGTCACTTGTGTCAGAAGAGATTTGAGTCGGCAAAGTCTTGCAAAATCCATTTAAAGCTCGTTCACTCGTTCAATATGAACACGCACCCCTGTCACTTGTGCTCAGTGTCTTTTAGCGCATTCGAGGCGCTGAAGATACACCTCCAAACCAGCCACTTGGCCGAGGATGAGATTTACAAATGCGAGGAGTGTAACCTAGTCTTCAAAGGCCACGAAAAGTTCGAACAGCACAACGATTCTTACCACGTCAATTTAGTCTCCAACATCAAGCAAAAAGTCTTGCCCAGATGTATAATATGTATGAAGGATTTTAGCACGAGAAAGACTCTAAAAAGACATATCAAGAAGTTTCATTTGGAGTTTGACCCGGACGAGCTGGCGACTTTCGGCTCAAAAAAGCGTGTCTTCAACGTCGACTGCGAGCACTGCTTGAAGAAGTTCAACGAAGAGCACTACCACAGCATGTATCTGAAGCTGAAGCATCAGAAGAACTCTATTATGTTCACATGCGAGTTTTGCTCGAGCTCCTACAGCGTTCTGGAGTTCTCGATCCAAAAGTTCAGGCAGCAGAACCTCGAGTGCAAGACGAAGATGATTCTTAGCGAGTTATGCACCGCCGAGATGAGTGACGAGGAAGAAGAGGATGAGTTGGCCAGTTTCGGAATGTTCGCGGAGGAAATGAAGATGGAGCCTGAGAGCACGACTAGCGATGTGATCAAACAAGAGCCCATAGACGAAGAATGCGTCGTCAAAAGTGAACCCATGTCGCCCTGA
- Protein Sequence
- MSQPCLDNFICDYCNRSFTRKYNLRIHIENCHLNTVTVCNICDQTFGSPSGLQLHLSRGHNRNYEGFPECDICGRIFKRKQNIVSHMITIHLQGNEINCQLCDKKFTTQRNLKRHIHQIHNPDFSYLECDDCSKIFKGKHSLIAHIQATHNISRYSSKCHICQKVYTNKRNLKRHIETFHGEKGEFKCSLCPKIYTSNQSLRRHSRVRHRPGNLIRPRVFYQNNYRQSYKYTCEKCDKSFGEEPLLRQHIKSEHSFITFYKYCKTSLLKQESQKRNYAVAELPKGIDTYTCEYCNSAFTNVYELKDHMRINHDKEYCLSTCNVCFNKFHSKETMSDHKKMCLPPPNANSCNYCDKLFTDISSLEFHTRIFHPQSQIADCDITSTNQDENAEDTNSIFKCVHCDRVYYSDRSLKHHIKLKHTTDEVVECKQCGKICNNKYYLASHTKIVHSDNSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHAESTAFPQCHLCQKRFESAKSCKIHLKLVHSFNMNTHPCHLCSVSFSAFEALKIHLQTSHLAEDEIYKCEECNLVFKGHEKFEQHNDSYHVNLVSNIKQKVLPRCIICMKDFSTRKTLKRHIKKFHLEFDPDELATFGSKKRVFNVDCEHCLKKFNEEHYHSMYLKLKHQKNSIMFTCEFCSSSYSVLEFSIQKFRQQNLECKTKMILSELCTAEMSDEEEEDELASFGMFAEEMKMEPESTTSDVIKQEPIDEECVVKSEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545067;
- 90% Identity
- -
- 80% Identity
- -