Zhep013211.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- znf711
- Assembly
- GCA_949319315.1
- Location
- OX439386.1:14594942-14599666[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.33 18 6.4 1.0 1 23 28 50 28 50 0.86 2 27 0.0039 0.21 12.5 0.6 2 23 78 100 77 100 0.96 3 27 6.1e-05 0.0033 18.2 3.3 3 23 125 145 123 145 0.96 4 27 0.013 0.74 10.8 0.5 2 23 149 170 148 170 0.96 5 27 0.022 1.2 10.2 4.2 1 23 175 198 175 198 0.95 6 27 4.3 2.3e+02 2.9 2.8 2 23 210 232 209 232 0.90 7 27 0.013 0.73 10.8 0.6 1 23 238 261 238 261 0.96 8 27 4.4e-07 2.4e-05 24.9 2.8 2 23 266 287 265 287 0.97 9 27 0.23 13 6.9 1.7 1 23 331 353 331 353 0.95 10 27 0.23 13 6.9 0.2 2 23 381 403 380 403 0.91 11 27 0.0015 0.082 13.8 6.1 1 23 426 448 426 448 0.97 12 27 0.12 6.6 7.8 3.8 3 23 454 474 453 474 0.95 13 27 6e-06 0.00033 21.3 0.7 1 23 479 502 479 502 0.97 14 27 0.11 6.1 7.9 1.1 2 23 512 534 511 534 0.92 15 27 0.0047 0.26 12.2 1.7 1 23 540 563 540 563 0.95 16 27 0.16 8.9 7.4 3.9 3 23 569 589 568 589 0.98 17 27 2.1e-05 0.0012 19.6 0.8 1 21 595 615 595 616 0.96 18 27 0.017 0.95 10.4 3.2 1 23 655 677 655 677 0.98 19 27 0.14 7.4 7.6 0.2 2 23 705 727 704 727 0.92 20 27 7.3e-05 0.004 17.9 2.8 1 23 750 772 750 772 0.98 21 27 0.17 9.4 7.3 0.7 3 23 778 798 777 798 0.96 22 27 4.3e-05 0.0023 18.7 0.5 1 23 803 826 803 826 0.96 23 27 1.2 65 4.7 3.5 2 23 836 858 835 858 0.92 24 27 0.0017 0.094 13.6 2.0 1 23 864 887 864 887 0.97 25 27 0.0024 0.13 13.2 4.6 2 23 892 913 891 913 0.96 26 27 2.9e-05 0.0016 19.2 3.3 1 23 919 941 919 941 0.97 27 27 0.00044 0.024 15.5 0.4 1 23 952 975 952 975 0.95
Sequence Information
- Coding Sequence
- ATGACGATTTCGGAGCGCAAGAACGCGGCCACGTTCATAGAGCACACTAACATCCGACCGTTTTTCTACCAACAAGCCAATTTTAAATGCTTCTACTGCAACGAGGTCTTCCCTGAAATACAATCTGTTTTGCAGCATACAACATTCCACGCAACGCCGGATAGAACTGCTCTTTTAAAGCAATACCTGAGGAAAGGGAAGCGGGTGATAAAGGTTGATATATCAGGGTTAAAATGCAAACTTTGCGAGCAGAAATACTCGGACTTAGATGATATTCGGAAGCATTTAACAACTGTACATAAAAAGGATTTCAACACGGCTGGCAACGGACTCATGGCCTATGACCTGACCTCGAAGAACGGCTTGCTGGCCTGCCACAAGTGCTCGAAGTCATTCAACTCCTTCTTCCTCCTAAACCGGCACATGAACGTACACTTCAGCGTAGTCTGCGAAACCTGCGGCTTGAGTTTCATGTCTCACCAACGACTGATCAACCACAGGATCGTCCACCAAAACGGGGTCCACAAATGCGACAAATGCGAACAGGTCTTCCCGACGAAGCTCAAGCTGCGCTACCACCTGTTCAAGAAACACGAAGTCACAAACGCCAAAAGGATTAAACCACTTAAATGTCCTCATTGTTTGGAGAGATTCGCTGAGCATTATCGCAAGATGACTCATCTGAAGGAGGTTCACGGAATATCATTTACTTTCGAGTGTAATGTGTGCAAAGTGACGTTGCCGACTCGGCGATCCCTGACTGAACACACAACGAAGCTACACACTCAGAAAATTCAATGCAAGTACTGTGGCAAGTGCTTCGGGACAAAGTCTTTGTTGAAAATGCACATGCGGGGACATACTGAAAAAGGACCGTCAAGAAGTACCGGTGGCGTCAATCTGTGGGGTCCGACCGTCGCCGAGAGGCGCAACGCGGCAACGCTCATAGCCAACACCACTATCAAACCATTCCTCTATTGCCGCTACTATTTCAAGTGCTTCTACTGCAAAGAGCAGTTCTCCGATATCCTAACAGTAATGGAACACACCTCCAAACACGAGAATCCCGACAAAATGACAATTTTAAAGAAACACCTGAGGGCGGGAAAGGGCACCGTCAAGGTCGACATTTCCAACCTCAAATGCAAGCAATGCCAAAAGGAACTGCCGGATTTAGACGCGACAAAAAAGCATCTAATCGACGAACACAAACTCGTCTTCCGAGACGCGAGTCTAGGCCTAAACGCCTACAACCTGGCGCCCCGAAACAGCCAGTTCTGCTGTCACATCTGCAAGAAAATGTTCCAGACTTTTATACTTCTGAACCGGCACATGAACGAGCACTTCAGCAACGCCATCTGCGACACGTGTGGCAAGGGATTTATGACGCATAAACGCCTTATGCACCATAAGGAACTCCATCTGGCTGGGGGTTACCCCTGTGAGAAGTGCAGCAAAGTCTACACCACTAGAACAAATTTAAAGTATCACATTGAAACAGCCCACGAGGGGACTACGACGAGCCGACAGCTGCGCTGCCCCCATTGCCCTGAGAGATTCATAGAACAGTTTAGGAAGCTCAGGCATCTGAAGGAGGCTCACGGTATCATATTCACGTACGACTGCGAGATATGCAAGACTACATTCCCGAGTCGCAGGGCGTACACGACTCACAACAACAAGTTTCATACGCAAAAGACGTTATGCGAGATTTGTATGAAGAGATTCAATTGTAAGACTTCACTGAAGCGGCACATGATCTCCCATACCGGAGAGAGTAACTACGTGTGTAGTATTTGTCAGAAAGCTTACAGACATCAGAAGAGTCTCAAGGATCACATGAAGGCGAGCAAGCAAGGCGCGGTAACAAGTATCTGGGAACTAACAGTTTCTGAGAGACGGAACGCAGCCACCTTTATAGATAACACCTCCGTCAGACCCTTCGTCTACTGTCGATACTTCTTCAAATGTTTCTACTGTAAAGAGCAATACTCAGACATCACCGCCTTGCTCCACCACACCTCCACACACGACAACCCAGACAAAGCAACCTTTCTAAAAAAACTACTGCCGAAAGGCATGCGCACTATAAAAGTCAACATCTCCAATTTAAAATGCAAAATATGCCAAAGAACCCTACCAGATTTAGACGCTGCAAGACAACACTTAACGCAAGAGCATAAGGTTGAATTCACGGAGTCCGGTCACGGCATTGTAGGCTACAACTTAGCGCTCCAAAACGGTCAATTCTCCTGCCACATTTGCAAGAAAATATTCCAAACTTTCATATTGTTAAACCGCCACATGAACGTGCACTTCAGTAATGCTATCTGCGAGACATGCGGCATTGGCTTTATGACGCATCAACGACTGATGCAGCATAAGGAAATTCACCTGCCCGGAGGGTATCCTTGCGAGAAATGTCAAAAGGTCTACACGACCATATCCAACTTGAAATACCACGTCGAAAAAGCGCACGAGGGGGCAACTAAAATGCGCCTGTTGCGCTGTCCGCACTGCACAGAGCGATTCGTCGAGCATTATAGGAAATTGAAGCACTTGAAAGAAGTACATGGTGTGACCTTCACTTTTGAGTGCGAAACTTGCAAAGCCACGTTTGAGTCGCGAAGGTCGCTCACCATGCACACCAATAAGTTCCATACGCAGAAGACGCAATGTGAAATTTGCAAGAAAAGCTTCAGTTGCCGCACAACTTTGAGGAAGCACATGGTATCTCACACGGGGGAGAGGAACTTCATCTGTCAGCTGTGCCAGAAGGCGTACAGACATCAGAAGAGTCTGAAGCAGCACATGCGGGCCCACGCAGCCGCTGCGGGCAGCGAGGTCGACAGATTTGCCTGCACAGAGTGCGGGAGCGGGTTCACAAACCGCAATGACTTTAATAAACACGTGAAGGAATGGCATCCGaggtcttattttaattttgcatcAAGTTGA
- Protein Sequence
- MTISERKNAATFIEHTNIRPFFYQQANFKCFYCNEVFPEIQSVLQHTTFHATPDRTALLKQYLRKGKRVIKVDISGLKCKLCEQKYSDLDDIRKHLTTVHKKDFNTAGNGLMAYDLTSKNGLLACHKCSKSFNSFFLLNRHMNVHFSVVCETCGLSFMSHQRLINHRIVHQNGVHKCDKCEQVFPTKLKLRYHLFKKHEVTNAKRIKPLKCPHCLERFAEHYRKMTHLKEVHGISFTFECNVCKVTLPTRRSLTEHTTKLHTQKIQCKYCGKCFGTKSLLKMHMRGHTEKGPSRSTGGVNLWGPTVAERRNAATLIANTTIKPFLYCRYYFKCFYCKEQFSDILTVMEHTSKHENPDKMTILKKHLRAGKGTVKVDISNLKCKQCQKELPDLDATKKHLIDEHKLVFRDASLGLNAYNLAPRNSQFCCHICKKMFQTFILLNRHMNEHFSNAICDTCGKGFMTHKRLMHHKELHLAGGYPCEKCSKVYTTRTNLKYHIETAHEGTTTSRQLRCPHCPERFIEQFRKLRHLKEAHGIIFTYDCEICKTTFPSRRAYTTHNNKFHTQKTLCEICMKRFNCKTSLKRHMISHTGESNYVCSICQKAYRHQKSLKDHMKASKQGAVTSIWELTVSERRNAATFIDNTSVRPFVYCRYFFKCFYCKEQYSDITALLHHTSTHDNPDKATFLKKLLPKGMRTIKVNISNLKCKICQRTLPDLDAARQHLTQEHKVEFTESGHGIVGYNLALQNGQFSCHICKKIFQTFILLNRHMNVHFSNAICETCGIGFMTHQRLMQHKEIHLPGGYPCEKCQKVYTTISNLKYHVEKAHEGATKMRLLRCPHCTERFVEHYRKLKHLKEVHGVTFTFECETCKATFESRRSLTMHTNKFHTQKTQCEICKKSFSCRTTLRKHMVSHTGERNFICQLCQKAYRHQKSLKQHMRAHAAAAGSEVDRFACTECGSGFTNRNDFNKHVKEWHPRSYFNFASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -