Zalb003998.1
Basic Information
- Insect
- Zele albiditarsus
- Gene Symbol
- -
- Assembly
- GCA_958496275.1
- Location
- OY292409.1:16532664-16535689[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.64 55 4.4 0.2 3 21 246 264 246 265 0.88 2 13 0.0026 0.22 12.0 0.1 1 23 271 294 271 294 0.90 3 13 0.0001 0.0089 16.4 3.5 2 23 307 329 306 329 0.96 4 13 0.025 2.2 8.9 0.3 3 23 342 362 342 362 0.98 5 13 7.9e-08 6.7e-06 26.2 1.5 2 23 402 423 401 423 0.97 6 13 0.012 1 9.9 0.5 1 23 428 451 428 451 0.87 7 13 0.22 19 5.9 1.5 2 23 526 547 526 547 0.97 8 13 5.5e-06 0.00047 20.4 0.8 1 23 556 578 556 578 0.97 9 13 7.9e-05 0.0068 16.7 0.2 1 23 586 608 586 608 0.97 10 13 0.016 1.3 9.5 4.3 1 22 614 635 614 639 0.93 11 13 0.18 16 6.1 0.7 1 23 664 686 664 686 0.96 12 13 0.091 7.8 7.1 0.0 1 23 772 795 772 795 0.97 13 13 3.7e-06 0.00032 20.9 4.5 1 23 800 823 800 823 0.96
Sequence Information
- Coding Sequence
- ATGGCTGCACAAATGACGTGGAAAAATTCGTGTAGATTGTGCGctgaagagaaaattgaaatgttacCAATATTTGGCGAAGAGGGTTTGAGACGACGTGTACCACAAAAATTACGAGTATGTTTACCTGTAATGGTATATAAAACTGATCCACTGCCGAAacaaatttgtcaattttgtGCTGCTCGATTGGacgatatatttgaatttaggGAATATTGTCTCAGTGTCTATAAGAGTACGCATTCAAAATTGTTGGCTAGCTCAAATACAAATTCagcgaaaatatttttggatgCAATGTTCAATTCTCCTGATCCATGTCAGGTACAATTATGCATGATAAAACAACGTGCACCGCCACCATTAGTCCCATTACCATCATCATTGCCTATAAACATATCAATACCATCATTAGCTACGATTCCAAAAATGGAACGAATGATCGTCAATGTTGAGCAATCGGTTGAGTTACCATGTGAAGttcaaataaaagaagaacCATCTGACGTTACGACtaaaccaaaattatttttagatggAAATGACAATAACCAAAGTTTAACTCATGAAAGTTTCAgagaaaatgatgaatcaGGTGATAACGATTCAAATTCTGAatcaattaatgatgaaaaacaaaccAGTATTTTAGAGCAAGTATTGACGGGAAGTCTAACAATCAATGATTGCCAAGAATTAGTTCCAAAGACAAAATTGAGTTCTGAATGGTGGTGCTCAccatgtaataattattatcgaaCTAAAGAGGGTCTTGTGAAACATATGCAACTTTATTGTCCACGAAGATATACGTGTAGTAAATGTTCACTTGTATTTGAAACTGTTGAAGAATTGGCTAAACATGAAGCTgaatatcatttgaaaataaatctcgATTTTGATGAATCAGTTAAGGAATGTCATCAATGCGATCGTGAATTTGTTAGTTGGGAAATGTTGAGGCATCATCGACAACGTGATCACATTGCTGGATCCGGTAGACTTTCAACAAATACCTGGTGTCCCCTTTGCAATCGATTTCTCCCAAATGAAGAATTGTACCGTAATCATCAGCAATTGCATGATGCTGGTATATTATCAAATGCAAGTGACCACCTGACAGTTCGCAAAATGAAAAGCGAAAAAGAAGATACGGCAGGAATAAAACAAGAACATTCAATTAGAAGTTTAAAGTCCCTCACATGTCCTACTTGCGGCAaaGTCTGCACGCAACAGAGTGCGCTATCGAACCACATGCGAACTCACGAACCTAAGAAGCATAAATGTGACATTTGCGGTAGAAcatttggattatttataCGCTTAGCTGCACACAAATTGAGTGAACATAATGTACAGCCAACAATATCACCGATAATGACTAGTGTGGAGCAAGAAGAGGCTTTGAATGCTGAAAGAGAGGCACGTGAAGCTCGcggagaaaaattaaataagagCAATCACTGCCGAACATTTTCTGAGACGTTGGACGACAATGAAGCGGCCGATAATGAGCAACGATCATCCAAACGCCGtgcatcaataaatattaaagcATCAAAAAATGTTGCACGATGCGGCATTTGCCAAGAATGGTTTAATGATCACACGACAATGCTCACTCATTTACAAACACATTCGGATAATGTTCCTTTGAAGAATTTCATTTGCTCTacatgtggaaaaaattttaaagaaaaatgGCAACTGCAAAGACATGaaGCGACTCATAAGCGTGCCAAAGAATCTGTTCACGAATGTTCCGTTTGCAGTAAACCGTTCCCTGATAAAGCGCAGCTAGATGCACacgaaaaaattcacattgtcGATAAAACTTATCACTGCccaaaatgtaataaaatattctttaaaGAACTATCATTGATGACTCATCAGTGTACAAGCATACAACACTCTACGAAGCACAATGCCGTTACAGCAAAAATGAATCAACAGCAACCCACACTAGTTTCTGATAATAAAAAGTTCAAGTGTTCAAAATGCCCGGACATGTTTGACACTACACAATTGCGCAATTTACACGCGCGAATTCATGTGGAACCGAAGGTACATATAAGATTTGTTACATTGAtttcgaataatataaatttcttattGTTGACTTTTTTATTGAAGTTGCCATCGCCGAATACGGATTTAaataatggtgatgatgattcGATGCCGAAATTAAAACCGCAAACATTATCAGATACACCCATTCTGGTATTGGAACCGAAGGTCGAGATTACGGAGGATCAAAATCCTCTTGTACCTCAAAAGAGGACACTTATAAGGACCGCCGGCGGATATCGTTGTGGCGTTTGCCAATCACCATTTGTTCTTCGTGATCTAGCTGTGGCACATCTAAGATCGGCACATCCAGTGATGCCTTATCAATGTCCATACTGTAAAAAACGCTTTACAACCCAATACACATTTTCTCATCATATAAAAGCTGATCACCCCGATGAATCGGAGAAATAA
- Protein Sequence
- MAAQMTWKNSCRLCAEEKIEMLPIFGEEGLRRRVPQKLRVCLPVMVYKTDPLPKQICQFCAARLDDIFEFREYCLSVYKSTHSKLLASSNTNSAKIFLDAMFNSPDPCQVQLCMIKQRAPPPLVPLPSSLPINISIPSLATIPKMERMIVNVEQSVELPCEVQIKEEPSDVTTKPKLFLDGNDNNQSLTHESFRENDESGDNDSNSESINDEKQTSILEQVLTGSLTINDCQELVPKTKLSSEWWCSPCNNYYRTKEGLVKHMQLYCPRRYTCSKCSLVFETVEELAKHEAEYHLKINLDFDESVKECHQCDREFVSWEMLRHHRQRDHIAGSGRLSTNTWCPLCNRFLPNEELYRNHQQLHDAGILSNASDHLTVRKMKSEKEDTAGIKQEHSIRSLKSLTCPTCGKVCTQQSALSNHMRTHEPKKHKCDICGRTFGLFIRLAAHKLSEHNVQPTISPIMTSVEQEEALNAEREAREARGEKLNKSNHCRTFSETLDDNEAADNEQRSSKRRASINIKASKNVARCGICQEWFNDHTTMLTHLQTHSDNVPLKNFICSTCGKNFKEKWQLQRHEATHKRAKESVHECSVCSKPFPDKAQLDAHEKIHIVDKTYHCPKCNKIFFKELSLMTHQCTSIQHSTKHNAVTAKMNQQQPTLVSDNKKFKCSKCPDMFDTTQLRNLHARIHVEPKVHIRFVTLISNNINFLLLTFLLKLPSPNTDLNNGDDDSMPKLKPQTLSDTPILVLEPKVEITEDQNPLVPQKRTLIRTAGGYRCGVCQSPFVLRDLAVAHLRSAHPVMPYQCPYCKKRFTTQYTFSHHIKADHPDESEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -