Basic Information

Gene Symbol
Jarid2
Assembly
GCA_958496275.1
Location
OY292408.1:14806875-14812995[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.6 1e+04 -3.1 0.4 48 83 149 182 136 183 0.61
2 2 1e-22 1.9e-19 69.7 0.1 6 89 1350 1431 1346 1431 0.94

Sequence Information

Coding Sequence
ATGGTACTGGGTAGAAATGataagagaaagaggaaggaGGGTGACTTGGTGGACCTTATGGATCCACTCTCAGAGTCTCCAAAAagagCTAAAGTTCATGCTCAGAGAAAATTTGCACAAGGTGCCGCAACTGTGTTCACTTTGCCCCAGGCTCTTGttaaggagaaagaaaaatctaAACCTACAATGCTTACTGAATTGATAACACACAAACGTCCTAATACAGAGGATTTCTTGACGTTTCTTTGTTTCCGAGGCACATCAATACTGCCACCTAGTCTGAATTTCTTCAATGTGGGCACCAAAAAAGATAAATCTGAGACAAAGTCATcgaagaaacaaaacaacaatagTCAATCAATTTCTAATATAACTGCCACACCAATTAGAGTGGCAAAAGTCGAATCGAATCACAATACGATATCTAAAACTAATAAATCAACTGATGTagataagaaaaaagtaaCGAATGATATTCAGAAGaatgtaaacaaatataaaacagCAACATCAACGATACAAgcattgaagaagaaatatcaAGAGCAACGTTTGGCTAAACAgaggattgaaaataaattcaagacTCAGTGTGTAATGAGAACACGTTCGACTACCGGTCGAACATTACTCAAACCCACGAGTAAATTAGCACCAAGAAAATTTCTACGACCAATTGAACCGAAACGCCATTGTTTACGCAGTAATACACTTATGGAAAAATCGCGTAAAGTTATTCCacaaaaaagtaaattaattgcaaaaacaaagaaaaaacctGTAGTTAAAGGGCAAAGCAGTGAATCCTCATCCTCTGAATCGTCATCAGAAGATGAGCGTAAATCCGATATAAAAGTATCATCGCAGCAATCGAAACGACCAataaaaactaataaaaaagttgtatgcacgagaaataaaatagattcacgACGAGTGACACGATCGCACAGCGAAGTTGTACCGTCAAATCATCGAGCGTCATCGCAACGTCCATCGAGGAAAACAAAGGAGGCTGCAGCCGTTTATATGGAGATACTCAGTAGAAAATTAGTGAGTCCAGATTTGGAAgtcgatgaaaatttatcaatggaCAGTTATCCGGAATTACCAAATGCACGACGGACAACACAAacggaaaatgaaatgaaagctAAAAATaagattattaaaattaatagagaaaaagaaacgaagCGCGATGTATCAGTTGGTAGTAAATCTGGTGATAAATCAAAGActgaaaagaatttattgaaatctAAAAAACCAATTAAAccacaaaaatattctgacaGTGAAGAGGAGTCTGTGAGTTCAGAGGAAAGTAATATTGCACGACCAATTACCAGGCGCAGTAGTGCCCATTCAGTTGTACCATTAGTGAAACCATCTACAAGTCGAAGTTTACGTTCATCAGTCCGAAATTCACCACAAAAATCTGAAATTACTCCAAAGTTATCGCCACGAGATAGTGGTAAAACGTTCATAAAACGAAAACGTGAACAAATCACCAATAAATCATCATCGAACAATGAGAAACCAAATACTCCAACtgcgaaggaaaaaaaattgaagaataaagtGGGATCACAGGATTCTGAAGATGAATCATTGGGCTCTGTCttgaacaaaatgaagaagaaacgTGAATTAGCTGAAGCAGCTGAGGAAAAGTTGCTTCAAGATAAACATTCACAAAAAAGTGTAGAAGTAAAGGTAAAAGTTGATTCTTCAAAAATATCAGATGATGAAGGATCTTTCCGTGGTTTTACAACAAAGGCCATAACAAAAGTGTTGATTTCATGTACGTCACATGCGAGCGAGAATTTGATAATAtctgaagaaaataatgtcaaaCCGAAGGTGATTGTAACGCCAGAAACCGCATCACCGGCAGTTACATTGTCGAAGGAGAATAAATATCCAAAAACTGAAGTAGTCGGGTCAATGATTCCACCAGCAGAAACCGTAAAACCCGAGCAAAAAGAATCATTATCGTCTAGTAATGCCCAAGTTGGATCATTATCTTCTATACCCAGTTTATCAGAGTCTGAAAAGAAATGTATTCATGTAGCAGCTAGTAGTCCTACACCCATTATTGATATGCCACCAACAACGACAACAGGTCGAAAAGAACGTGTCAATATGTCAACGGAACAGATTGAAAAATGGTTGAATGAAAGTTCAATGGCGAAAGAGGAAAGTAATGCCGAAATGGAAACAGTTTcgacattttcatttgaagtttcggaaaaaaataaatcagatATGAGTCACTTGTCTATTCCAACGCGTATTCAACATTTAGTGAGACCGGTAAATGTGGCAATAGCAAAAATGGCAGAAAAAATACTTCCAAAGAATCGTCGTGGTGGTCAAATGACAGCAGCGACAATGGTTACTGGCACGGGAATTGCATTGGCAAAAATTCCAGCCACTACTAACTTAATACCGACaaataggaataaaattaatgctgatatcaaagaaataataaaagggCGGATTGCAAGAGCAGGTATTGTATGCGTCGCGAATAAAGAAACAAGCGCATTCGATGATAATAGTGATGTAAGTTCACGCGCTGATGGAACAACGTCAACCGAAGGATCACCAGATAAAAAATCACCGGAAAAAAAACCCATTTATCAACAACGTAAAACATTTTTACCAAAGgtgaaagaacgaaaaatCGCAATACCAAGTATCAATGCTTTCTCGCCTGAGAATGAAAGTAGTGTGTATGCATTTGAAAGTGATCCGGAAGCGCCTGTGAGTACACCATTCAGGAGAAAGCAGCGTGACAGTAAATCGGGGGCATCAGGATCATCAGATATGGAAGCATCACGTGCAGAAAGTGAAGATGGAAATGTCAAAAGTCCGTGTAAATCCAtggaaaaagatgaaaaagaattatcaaatacaaaaaatgtcGGTACAAGCAGCGATGATGTCGAGATGGAtgcaattaaatcaataaattcaccTATTGACatttcaaatcatttgaataaatttcaattgccagaaaattttcgaaatttatcaaatattcaacttCTACCACTCAGTAAGATCCCAAATGTATGGAACAATGTCAATTGTAGTGCGTCTATTGCAGTCCAAGTAAACTTCGATGACCAATCGCAGGatcaacaaataaatccaTTAAATATAGACGGTGGACAACAAAAAAGTACGGAAATATCAACGCAAACTGAAAGCaccaatgaaaatgatgatgacagTGATGCACACGTATTTTACATTCCTTTGCAAACTGTCGCGAGAAATGGACCAAATATGGTTCCGGGTCAACCACTTATTCAAGGTGTAGCGGTGAAACTTGGTACAGAGGGGCCTAACGGACCCAATCAACGTGTACTGTTGCGAGCTCAATTAGTGACAAAACGACCATTGGCCGTTGCTCGTTGCCCTCCAATTGGAACAGTTCAGCCAACAACTAGAACACCACCATCTGGAGCGAGTGACTCGATTCCATCTACTTCCGCTTCATCGATGACTTCAACACCTGTGATTGCACCCAATGCTCCTATTGCACCAGCTTCGCCGCAAGTTCAGCCACCAATAGTTCATAatactgagaaaaatattgacaataaaccACCATCAACAAAGAATACCGCCAATGTCAGTACAGAAAAAGTTCAAAAATCTCCAAAGGTATCGCGTGAAAGAAAGAGTTCTATTGAAACAACCAAACCTACGAAAAAGAATCAATCGAAAGCTAAGAAAGGTAATGATTCCATGTCTACGATTAATAAAGCATTCCCAAGTATGGAAGTAAGGGGCGAGGCGCGTTTGGTTGAAGCTCCTACTTTTCATCCATCGGAGAAAGATTTTCAAGATCCATtggaatatattgataaaattcgtCCAATAGctgaaaaatatggaatttgTCGTGTGGTACCACCATCAAATTTCAAACCCGAGTGCAAAGTATCAGATGATATGCGATTCACCGCttacaatcaatatatacatcgtATGCTCCATCGTTGGGGTCCAAATGTCAAAGAAATGAtggcaattaaaaaatatttagcaaCACAAAGCATAACATTAAATCAACCGCCGTGGGTTGGTGGAATGGAAATTGATTTACCACATTTATATCAAACTGTTCAGAGTTTGGGTGGTTTGAAAgaagttattgaaaaaaagaaatggcaaAAAGTCGCTGATGGTATGAAAATACCTAAATCCGCACAAGATCGCGTCACCAAATTGgatgatatttattgcaaatatttattgccatACGATACATTATCGACaatggagagagaaaaattattcgatgAAGTGGAAATGGAGTGGAGAAAACGGGAGAGCAAAGCTTTGCAACGACTTAATGAATCATTGTCGACTGACAATGAGGACGATGAAGACGAGGATAGTTCTGATGAAATAGAGGAGTGCATTGTTAAAGGGAGAAATATGCCACTAAATGCATTTTATCGAATTGCACGTAACACACAACGCATGTGGTTTGGTGAAAATCAAGGCACAGCGTGTGAAGCTGATGGTGCATCAGCTACTGAAGTTGAAAATGCATTTTGGAAACATGTCGCTGAACGCAAACGTCATGTTTGCGTTCATGCTGCAAGTATTGATTCGAGTGGTCGTGGATTTGGTTTTTCAGTAGCTAAAAATAGTCCATTTGCGCGTCATCCATGGAATTTAAAAGTATTGACAAACAATGCAGGCTCTGTTTTGCGTGCGTTAGGACCATTAATGGGTGTTACTGTGCCGACACTTCATGTGGGAATGCTCTTTAGTGCATGTTGCTGGTATCGCGATCCACATGGCTTACCATGGATCGAATATTTACATACtggtgcaaaaaaaatatggtatGGAATTCCTAATGAACATAGTGATACATTCAGAGAGGCATTATCAAAAATGGTACCGCGcttttgtaaaaataaaactatttggTTGCCATCCGATACGGCCATGGTTCCACCAGAAATGTTAGTCAACAATGGTGTGCCATTGTGTCATACTGTTCAAGAGCCCGGACAATTTATCGTGGTATTTCCAAAGGCGTTTACATCGAGTATTTGTACAGGTTACGTTGTCAGTGAGAGTGTTTATTTTGCTCAGACAACGTGGCTAGAACATGCCGAACAAATTTTCAAGGATTTGCAAGATAGCTGCGAGCCGTCAATGTTTTCTTTTGAGCGATTGCTCTTCAGTATTATCAATGACTCAAGATCGCACATTGATATTTTGAAGCAgATTTTACCAGCAGTAACGAAAATACGAGaaagagaattaaattatcgGCAAGAATTAGAGTACTATGGAATAACGAATAAAGAGAAATTGCCATTGCCAGGCAATAGTAAACGTAGAAAGGGGCAGAAAGTGAAGGAAGACGAGAGTGATTATGAGTGTGAAACTTGTCGagcaaatttatttgtatcattaGTGAGTAATTCGCAGGATGACAGTGCTTATTGCCTTCCACATGCACTGCATTTAATTGGACGAAAAAAGCAAGTTCTTAAACATTGTATATTGAAGTATACCTACAGTGAGGACGAATTGGACGACTTAATTCACAAGCTGGAGGATAGAATCGAAGCCAAATCGAAAAAGTCTAATCAAAACAGGCAAATTAAGTAA
Protein Sequence
MVLGRNDKRKRKEGDLVDLMDPLSESPKRAKVHAQRKFAQGAATVFTLPQALVKEKEKSKPTMLTELITHKRPNTEDFLTFLCFRGTSILPPSLNFFNVGTKKDKSETKSSKKQNNNSQSISNITATPIRVAKVESNHNTISKTNKSTDVDKKKVTNDIQKNVNKYKTATSTIQALKKKYQEQRLAKQRIENKFKTQCVMRTRSTTGRTLLKPTSKLAPRKFLRPIEPKRHCLRSNTLMEKSRKVIPQKSKLIAKTKKKPVVKGQSSESSSSESSSEDERKSDIKVSSQQSKRPIKTNKKVVCTRNKIDSRRVTRSHSEVVPSNHRASSQRPSRKTKEAAAVYMEILSRKLVSPDLEVDENLSMDSYPELPNARRTTQTENEMKAKNKIIKINREKETKRDVSVGSKSGDKSKTEKNLLKSKKPIKPQKYSDSEEESVSSEESNIARPITRRSSAHSVVPLVKPSTSRSLRSSVRNSPQKSEITPKLSPRDSGKTFIKRKREQITNKSSSNNEKPNTPTAKEKKLKNKVGSQDSEDESLGSVLNKMKKKRELAEAAEEKLLQDKHSQKSVEVKVKVDSSKISDDEGSFRGFTTKAITKVLISCTSHASENLIISEENNVKPKVIVTPETASPAVTLSKENKYPKTEVVGSMIPPAETVKPEQKESLSSSNAQVGSLSSIPSLSESEKKCIHVAASSPTPIIDMPPTTTTGRKERVNMSTEQIEKWLNESSMAKEESNAEMETVSTFSFEVSEKNKSDMSHLSIPTRIQHLVRPVNVAIAKMAEKILPKNRRGGQMTAATMVTGTGIALAKIPATTNLIPTNRNKINADIKEIIKGRIARAGIVCVANKETSAFDDNSDVSSRADGTTSTEGSPDKKSPEKKPIYQQRKTFLPKVKERKIAIPSINAFSPENESSVYAFESDPEAPVSTPFRRKQRDSKSGASGSSDMEASRAESEDGNVKSPCKSMEKDEKELSNTKNVGTSSDDVEMDAIKSINSPIDISNHLNKFQLPENFRNLSNIQLLPLSKIPNVWNNVNCSASIAVQVNFDDQSQDQQINPLNIDGGQQKSTEISTQTESTNENDDDSDAHVFYIPLQTVARNGPNMVPGQPLIQGVAVKLGTEGPNGPNQRVLLRAQLVTKRPLAVARCPPIGTVQPTTRTPPSGASDSIPSTSASSMTSTPVIAPNAPIAPASPQVQPPIVHNTEKNIDNKPPSTKNTANVSTEKVQKSPKVSRERKSSIETTKPTKKNQSKAKKGNDSMSTINKAFPSMEVRGEARLVEAPTFHPSEKDFQDPLEYIDKIRPIAEKYGICRVVPPSNFKPECKVSDDMRFTAYNQYIHRMLHRWGPNVKEMMAIKKYLATQSITLNQPPWVGGMEIDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSTMEREKLFDEVEMEWRKRESKALQRLNESLSTDNEDDEDEDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQGTACEADGASATEVENAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPNEHSDTFREALSKMVPRFCKNKTIWLPSDTAMVPPEMLVNNGVPLCHTVQEPGQFIVVFPKAFTSSICTGYVVSESVYFAQTTWLEHAEQIFKDLQDSCEPSMFSFERLLFSIINDSRSHIDILKQILPAVTKIRERELNYRQELEYYGITNKEKLPLPGNSKRRKGQKVKEDESDYECETCRANLFVSLVSNSQDDSAYCLPHALHLIGRKKQVLKHCILKYTYSEDELDDLIHKLEDRIEAKSKKSNQNRQIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00451718;
90% Identity
-
80% Identity
-