Zvit007310.1
Basic Information
- Insect
- Zaprionus vittiger
- Gene Symbol
- -
- Assembly
- GCA_018904025.1
- Location
- JAEIFQ010000420.1:290208-296524[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.023 2 8.9 0.2 1 23 731 754 731 754 0.94 2 12 3.8 3.2e+02 2.0 0.2 1 23 916 938 916 938 0.91 3 12 8.4e-05 0.0071 16.6 2.7 2 23 941 962 941 962 0.97 4 12 3.3e-05 0.0027 17.9 0.2 3 23 970 990 968 990 0.98 5 12 2.7e-07 2.3e-05 24.5 4.1 2 23 997 1018 996 1018 0.97 6 12 2.4 2e+02 2.6 0.4 5 23 1031 1049 1028 1049 0.95 7 12 0.64 54 4.4 5.4 3 23 1056 1077 1054 1077 0.93 8 12 0.068 5.7 7.5 0.2 2 23 1088 1108 1087 1108 0.96 9 12 2.6e-05 0.0022 18.2 0.4 1 19 1114 1132 1114 1136 0.95 10 12 7.4e-06 0.00062 19.9 0.5 1 23 1144 1166 1144 1166 0.98 11 12 4.9e-05 0.0041 17.4 7.6 1 23 1172 1194 1172 1195 0.96 12 12 0.013 1.1 9.8 1.6 1 16 1200 1215 1200 1217 0.91
Sequence Information
- Coding Sequence
- ATGGTTGAGAGCATGCAGTGCCCCGTGTGCACCCTGTACCTGCATGCGGGTATGAATCTCTCCGATCATTTGGAGACACATCCCAAGGAGCAGGTGATCAAGGCTTTGGTGCAGATGACTATTGTTGGCAACAATGTGGCAGGCAGTTCCTTGGCTACAGCTGTGCTCTCCACTGCCGCCGGTTGTGGCACAACCGATGGCAGTGGCAGCGGTGGCAGCACATCCTCCACTTCCTCATCGGCCTTGTCCTTTGGACGCAATATCAGCAGCCGCCAATCGACAAATTCGCCATTTGGTGCACTGTTAAATGCTGCCGCACAAGCTGCCTACGTTCCACCTGCCGCAGGGGCACCATCTGTGCTGCGTTATGCCGAATCACCCGTGGCCCACTACTTGGAGCGCGATAATGGCGACTTTATTGTGCAAGAGACGCCCAAGCATATTGTGGAATGCGTTGAAAAGGAGGATGGTGAATTCTCAGTCATTGAACGCATCTATCAATCGCCGCCCAGCGTGTTGCACATTCACGACGAAGACGACGACGACGATGACGAAGATGAGCAGGAGACGGAGGAGAAGGTGCACAACTGGACGCATAGCGAGGATGAGGATCAGTCCAAGGTGTCACATGGCCATGTGGAAGATGGCGATGATGAGCGCGAGGACAGCCGCAGTAAAGTTGGCGTCAAGCAGACAACGAAAAGAACATCGCGCAAAACTAAATCCGGTGGAAGGATAAGCAAACGCACTTCCAAGCATCATCAGCATCAGCCAGTGGAGGATGAAGATGACTTCATGAGCGTCGGCAGCAGTTGTGCCGATAGTGACCATCAGTCCGAGCAGCAGCATCAACACCATCAACAGCCACAGAATGCCTCAAGTGCTGTACTGGCATCGTCATCATCCTCATCATCTGCACAGCATCTTTCCACGGCACCCTCAACCTCAGCTGCAGCTGCTGCCGCTGCCAACAACAGTGGTGCCTCATCTGCAACGGTTAGTTCCAGCGGGGCCACCAAGTCGAAGAAGAATCGCGTGACGGTGCTGAGTGATGTGCCGCTGAATATGAATGAGTATTTGGATTTGGTTGGCAACATTGTGGCATCAAGTCGCATTGGTGCGGCACTGCAAGGGCCAACTGGGGAGCTGGTGCAGATCAAGAGCGAACGTACGGAAGTGGCAGCAGGCACAGGCAGTATATTGGAGAAGCATCTGACCACCAGCTATGCAGCTACACAACACCAACACCAGCAGCAGCAGCAACTACAGCAACAATTGTCGCGTAAACATTCGTCTGTCAATGATGATGATGCGCGAGTGCTACTGGAATTTGCCAACTCCAATTCAAAGCAGCAGCAGACCCAATCGGGCACCACGTTTGTTGTGAATGCGGCAAGTTTTGCCTCGGCCGGATCCGTCTTTGCTGTCAATGCCAGTAGCAATGCTGTGGGCAGTCCGAGTGCAAAGAAGGCAAATAATACGCAGGGCGAAGAATATATATTGCCCGATGATAACAATCTGGAAGTGGATGAAATTGTGATATCCTCCTCTGATGCTAGCGATGCCAAATATTTGGATTTGGATGCGTGCAAGCGGGAACAGTTGAGCAACAGCAGCAGCCACTTGCCATCGGTCTCGGCATCCACATCGACGACGTCTTCTTCATTTGCTGCTGCTGCAACGGAAAGCAGTTTAGTGGGTGGTTTAGGTCTCAACATACGCACAGATGAGAAGATGCCAGCCAAAGGGGAAATATCAGAGCAGGAGAGCAATTGTGACATTGAGAACTCCTGGAGTCAATCGGTAGGTATGTACGGCGACATATCACAGCGTTACTTTAGAAATCAGTTCTCAGATGGATACAATCAACAGCTGGCCGATTGGCGTCAGGATTACTATCCGGCGCAAGATCTCAGTGGCCAGCAATCGCAGCAGGAGCAGCGTGAGCACAAACGCACTTTTGATTTTAATGCCGTCGCTTCGGACTATGCGCAACCGGGTGATCTGGATGCCTCCTCGAGCTCGGCGAGAAGCAACAATCATTTGTTGGATGCTCAACCCACCACCTCATCATCGTCATCGGCATTGCTGGCTGGTCCACCAATTGCCTCGACTTCACGCGCCGCAGCCGAAGCAGAAGCAGCTGTTGCAGCTGCGCTGGCACAACGCAAGCCACCGCGTCGCAAGATTTACAAGTGCCCGCATTGTGTGGCCATCTTTGAGAAGCTGAAGGAGCGCAATGCTCACATGATTGGCGAGCACAATTATGTGCGGCAGAATCGTCGTTTAATCTGTACACAGCCACTGGTTAGTGGCACAATAATGTCGCAGCCACAGGATGCGCAACAGCAGCAGGCGCAGCAGTTATCCCTGCAACCGGAGTCAAGCGATGTTGCTGCTCTGCAAGAGGACTCCAAGGATGGCATAGTGAAGATCAAGCAGGAACATTGTCAAGATAAACAAGACACGTCAGGGCAGATGCTTGATCAAATGGAGCTACCCGATGTGAAGGATGCCGATTTACTTGATGTGAACGGTTCAAATGGACGCGATGCCGATATGAAACCACCGACAAGCACCACTGAAATAGATCAGAAGCCAACAATGGCACCATTGGCAATTACCACACCTGCTGCCAAGTTGGCGGCACTTTATCGCATGCTTATTTCCTACAATGAATCGAAACTGGGGCAGGAGCGTAACAATCTCAGCGAACTGGAGCAGAAGGCCATGGAGAAGTCCATATTTCTTTGCTATGTTTGTCGTACGGATTTCCCTTCGGTTAAACTCTACGATGCCCATTTAACGGAACATCCCGCCGAGTGTTTTACGTGCGGCAAGAAATTCTATCGCTGGAAGAACTTCTCATTGCATCTGAAGCGTCATCTCGGCTGGAAGGAGTTTGGCTGCTATGTCTGTGACAAGAAGTTCGTGGTGCGCAGCGCTCTGGTCGAGCACATGCGTATGCATACGGGGCAGAGTCCACTCAAGTGCAAGATATGTGGCAAGAAATTCAAGCGTTACTCCAATTTGACGCAACATCGCAAGCGACACACCAAAATGATGGTGCGCAAAAAGGAATATGTTTGCCACTGCGGCGAAGTGTTGCCGTCAAAGGCACGTTTTCTGTGGCACAAGGAGACGCATGATCTGAAGCCCAAATGCTGTCCCTATTGCTGCGATCGTTTCGTGCACGCCAATTCGCTACGTCGCCATATACGACTGGCGCACTCGGATAAGTTCGACTATGCCGAGCCAATGGAGTGTCCCATGTGCAAGCAGATATTCGCCAAGACCTCGATAAAGGCGCACATGGCAACGCATTCGACAGATCCGCAATACGATTGCGCCATCTGCAACAAAAGTTTCTCCACCAAATGGAATCTCAAAATACATTCGTGGGTGCATGCGAATCGCACAGCCAAACCCTTCAAGTGCGAGTACTGCCCCAAGGCATTTGTGCGTGAACTGGACTTTAAGAACCATATGAATGCACACAAGCAGATCAAACCGTACACCTGTGAGTATTGTGGCTGCAAGTTCATACGCAAGTACAACTATATGCGGCATCGGCGGGAGCATCATGGCAACAAGAAGTTCACCTGCGATCAGTGCGATAAATCCTTCCATCGGCATTACTATCTGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCACGAAAACCAATCACAACAAGCATCTGAAGATTCATCATTCGCGCGATCCCTTCACAGTGGAGGTCTAA
- Protein Sequence
- MVESMQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGNNVAGSSLATAVLSTAAGCGTTDGSGSGGSTSSTSSSALSFGRNISSRQSTNSPFGALLNAAAQAAYVPPAAGAPSVLRYAESPVAHYLERDNGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDEDDDDDDEDEQETEEKVHNWTHSEDEDQSKVSHGHVEDGDDEREDSRSKVGVKQTTKRTSRKTKSGGRISKRTSKHHQHQPVEDEDDFMSVGSSCADSDHQSEQQHQHHQQPQNASSAVLASSSSSSSAQHLSTAPSTSAAAAAAANNSGASSATVSSSGATKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGAALQGPTGELVQIKSERTEVAAGTGSILEKHLTTSYAATQHQHQQQQQLQQQLSRKHSSVNDDDARVLLEFANSNSKQQQTQSGTTFVVNAASFASAGSVFAVNASSNAVGSPSAKKANNTQGEEYILPDDNNLEVDEIVISSSDASDAKYLDLDACKREQLSNSSSHLPSVSASTSTTSSSFAAAATESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSVGMYGDISQRYFRNQFSDGYNQQLADWRQDYYPAQDLSGQQSQQEQREHKRTFDFNAVASDYAQPGDLDASSSSARSNNHLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAAVAAALAQRKPPRRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICTQPLVSGTIMSQPQDAQQQQAQQLSLQPESSDVAALQEDSKDGIVKIKQEHCQDKQDTSGQMLDQMELPDVKDADLLDVNGSNGRDADMKPPTSTTEIDQKPTMAPLAITTPAAKLAALYRMLISYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQSPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIXXXXXXXXXXXXXXXXXXXXSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01558467;
- 90% Identity
- -
- 80% Identity
- -