Basic Information

Insect: Zaprionus vittiger
Gene Symbol: -
Assembly: GCA_018904025.1
Location: JAEIFQ010001126.1:7584841-7588876[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.3e-08 4.5e-06 26.7 1.8 2 23 38 59 38 59 0.97

2 9 1.5e-07 1.2e-05 25.3 1.5 1 23 65 87 65 87 0.98

3 9 6.2e-08 5.2e-06 26.5 1.1 1 23 93 115 93 115 0.98

4 9 3.7e-07 3.1e-05 24.0 0.7 1 23 121 145 121 146 0.95

5 9 5.8e-05 0.0049 17.1 3.0 1 23 151 173 151 173 0.97

6 9 0.0002 0.017 15.4 3.3 1 23 179 202 179 202 0.98

7 9 9e-05 0.0076 16.5 2.7 1 23 208 230 208 230 0.99

8 9 2.1e-06 0.00018 21.6 0.8 1 23 235 257 235 257 0.98

9 9 0.0029 0.24 11.8 0.3 3 23 265 288 263 288 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.3e-08	4.5e-06	26.7	1.8	2	23	38	59	38	59	0.97
2	9	1.5e-07	1.2e-05	25.3	1.5	1	23	65	87	65	87	0.98
3	9	6.2e-08	5.2e-06	26.5	1.1	1	23	93	115	93	115	0.98
4	9	3.7e-07	3.1e-05	24.0	0.7	1	23	121	145	121	146	0.95
5	9	5.8e-05	0.0049	17.1	3.0	1	23	151	173	151	173	0.97
6	9	0.0002	0.017	15.4	3.3	1	23	179	202	179	202	0.98
7	9	9e-05	0.0076	16.5	2.7	1	23	208	230	208	230	0.99
8	9	2.1e-06	0.00018	21.6	0.8	1	23	235	257	235	257	0.98
9	9	0.0029	0.24	11.8	0.3	3	23	265	288	263	288	0.94

Sequence Information

Coding Sequence: ATGTATTCTTTGTTGTCTTTACACTGTTCACAGTTATTCCAAGTGCCCGGCTATAGCATACCCACGTGCGACGATTCTGAAGATGTGGATCTGATATTCAACGAGGAGGGCTCCTGCCCGCTGTGCAACAAGACCTTCTCGCGCAAATCCTCTCTCATGACGCACATACGAAATCACTCAGCGGAGCGCAAGTTTGTGTGCAGCTATTGCCACAAAGGCTTCACGCAGGCGGCCAATTTGCGGAACCACGAGCGGATCCACACAAACGATCGGCCGTATCAGTGTGTCGACTGTGGCAAGACCTTCACTCAAATCACAAATCTTAACAATCATCGGCGGCTGCATACGGGCGAGCGTCCCTTTGTGTGCAATGAACCCGAATGCGGGCGCAGCTTTGCACAGGTGACCAATCTGAACAATCACATGAAGTCACACCACAAGGTGCAGCAGTATTGCTGCAACGTGTGCAGCAAGAAGTTCACACAGGTTACCTCGTTGAATCAACATCTGCAGGCGCATGCCGGCGTCACTGGATACTATTGTCCACGCTGTCCGGAGAAGAACTTCAAGCTACAGTCGCAGCTGCACACGCACATGAAGACCCACGGCCAGGCGTTCCCCTACGAGTGCAGCAAATGTGATGAGAAGTTTCTGCAGCAATCGCATCTCGATCAGCATCTGAAGATGCACGATGAGTTCAAGTTCAAATGCGATATATGCCCCAGTAGCTTTAATCAGGAGTCATTGCTCAAGAAGCATGTGCAGCGCCATGTCGAGGGTCGCTATCTTAACTGTCCGGTGGCCAATTGTGCCGAATCGTTTGCCGTGCGACAGCATCTATCCAAGCATTTGCTCACGAATCACTCCCATCACGAGCTGCCGCCCCCGAAGCGCTCCAAAAAGACGACTCTGCAGTCGCCACAACAGCCGCTGGCCATGATTGGGCAGCCCCTATCGCTGCAGCACACGACGGGGCAACGTAAGTGTTCATCTAATCCTCAATATGCGAATCTACACTCAGATTACATATGGGATATCATAGGACACAGGGACACAGATAGATGGATAGGTCAAGAGATCAGTTGCCTACAGATATTAGATTGCAGCAACTTGAAGAGTTGA
Protein Sequence: MYSLLSLHCSQLFQVPGYSIPTCDDSEDVDLIFNEEGSCPLCNKTFSRKSSLMTHIRNHSAERKFVCSYCHKGFTQAANLRNHERIHTNDRPYQCVDCGKTFTQITNLNNHRRLHTGERPFVCNEPECGRSFAQVTNLNNHMKSHHKVQQYCCNVCSKKFTQVTSLNQHLQAHAGVTGYYCPRCPEKNFKLQSQLHTHMKTHGQAFPYECSKCDEKFLQQSHLDQHLKMHDEFKFKCDICPSSFNQESLLKKHVQRHVEGRYLNCPVANCAESFAVRQHLSKHLLTNHSHHELPPPKRSKKTTLQSPQQPLAMIGQPLSLQHTTGQRKCSSNPQYANLHSDYIWDIIGHRDTDRWIGQEISCLQILDCSNLKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00514324;
90% Identity: iTF_00475357;
80% Identity: -