Basic Information

Insect: Zaprionus vittiger
Gene Symbol: -
Assembly: GCA_018904025.1
Location: JAEIFQ010001099.1:3134483-3136437[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.9e-06 0.00033 20.8 0.5 2 23 66 87 65 87 0.98

2 15 0.00023 0.019 15.2 2.7 1 23 93 115 93 115 0.94

3 15 0.0014 0.12 12.8 1.5 1 23 121 143 121 143 0.97

4 15 1.2e-05 0.001 19.3 0.7 2 23 172 193 171 193 0.97

5 15 2.3e-05 0.0019 18.4 3.3 1 23 199 221 199 221 0.98

6 15 0.0052 0.44 11.0 2.6 1 23 227 249 227 249 0.98

7 15 0.0012 0.1 13.0 0.1 1 20 343 362 343 363 0.95

8 15 1.7e-06 0.00014 22.0 4.5 1 23 377 399 377 399 0.98

9 15 1e-07 8.6e-06 25.8 1.2 1 23 405 427 405 427 0.99

10 15 1.4e-06 0.00011 22.3 4.7 1 23 433 455 433 455 0.99

11 15 4.9e-07 4.1e-05 23.6 2.4 1 23 470 492 470 492 0.98

12 15 8.7e-07 7.3e-05 22.9 3.3 1 23 498 520 498 520 0.98

13 15 9.4e-05 0.0079 16.5 8.8 1 21 526 546 526 548 0.96

14 15 8.2e-05 0.0069 16.6 2.3 2 23 555 576 554 576 0.97

15 15 1e-07 8.6e-06 25.8 4.9 1 23 582 604 582 604 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.9e-06	0.00033	20.8	0.5	2	23	66	87	65	87	0.98
2	15	0.00023	0.019	15.2	2.7	1	23	93	115	93	115	0.94
3	15	0.0014	0.12	12.8	1.5	1	23	121	143	121	143	0.97
4	15	1.2e-05	0.001	19.3	0.7	2	23	172	193	171	193	0.97
5	15	2.3e-05	0.0019	18.4	3.3	1	23	199	221	199	221	0.98
6	15	0.0052	0.44	11.0	2.6	1	23	227	249	227	249	0.98
7	15	0.0012	0.1	13.0	0.1	1	20	343	362	343	363	0.95
8	15	1.7e-06	0.00014	22.0	4.5	1	23	377	399	377	399	0.98
9	15	1e-07	8.6e-06	25.8	1.2	1	23	405	427	405	427	0.99
10	15	1.4e-06	0.00011	22.3	4.7	1	23	433	455	433	455	0.99
11	15	4.9e-07	4.1e-05	23.6	2.4	1	23	470	492	470	492	0.98
12	15	8.7e-07	7.3e-05	22.9	3.3	1	23	498	520	498	520	0.98
13	15	9.4e-05	0.0079	16.5	8.8	1	21	526	546	526	548	0.96
14	15	8.2e-05	0.0069	16.6	2.3	2	23	555	576	554	576	0.97
15	15	1e-07	8.6e-06	25.8	4.9	1	23	582	604	582	604	0.99

Sequence Information

Coding Sequence: ATGAGTGGATTAATAGACATAAGCTGTATAAAGGTCGAACAACAGCAGGAGGAGGAGACACTAGAGCACATGAGCTGTGATATTGATATAGGGCCCATTAAAATAGAACCTGAATGGCATGAAACAACGACACCAAAACAAGAGAAGCAACTACCAACTAAAATTCCAAGCAAACAGAAGCTCGACAGGAGCAACCAATGTCCTCATTGCCCGCGACACTTTGAGCGAGCTGATGAGCTGGCGATCCACATACAGATTCACAGTGATAAGCTGCTATACAAGTGCAACTACTGCCCCAATAGTTTCTCCCATAAATCCGTATTCACGGCGCATGTGTTTGGACATACGGGAAAATTCCCCTTTCAGTGCACTAAATGCGAACAAGGCTTTCTCAAAAACTATGAGCTGAAGAAACATCAACTTGCGCACTGTGAAGTGAAAGTGCGAAAACAGACACATAGTGCACAGTGTCCCAAGAACTGTGAACATACAGAGACACGCAAAGAGCTGCTGCAATGCCCGCAGTGTCCTCGTGGCTTCTCCAAGTGCTACGAACTGCAGATACATCTGCAAATCCACAGCGATAAGTTAGCCTACAAGTGTGCCTACTGCCCGAACAGCTTTGCGCATAAATCGAATTTCATGGCTCACATTTGTGAGCACACAGGCAATTTTCCTCACAGATGTCTACAGTGCTTGCAGGGGTTCATGAAGCGTTATGATCTCATGCTGCACATGCAGACACATCTGCAGCAAAGTCTGATCGAGACTAAGGAGCCGACAACTAAAATACGCCGCGTTGATCTTAAAACTATAAAAGATTCTTTGAGAATCAAGAGCCCTGGAGTACTTATAAAGGATACTACGAATATAAGCAAGATTAAAGAGAAACCTCAGATAGAGACAATAAAGAAAACAACCTTACCGCACCCCGAGACGACAAAGAATACTCCCCTAACCACTTCGACTGATCAAAGTTTAGTTAAAACGAAGGCAGAGGAGAAACCCGCTAAACCTGATGAATCCTTTAAATGTACGATCTGCAGCAGGAACTATGCCAATGCAAATGAACTGCGGCTGCATGAGAAATGCTTCACACACTCGAGCAAATACCTTGGCAAGCGTCTGCACAAGTGTAACCAATGCTCGAAGACCTTTACGACCTTAAACAACCTGACGATGCATCAGCGAGTTCATACGGGCGAACGTCCTTATCAATGTCCTCACTGCCCGCGCAACTTTATACAGAACTCAGGACTGCAGTTGCATATGAGGCAGCACTCTGGGGATAGGCCTTACCAATGTCCTCACTGTCCACGGGTGTTTGCCAACAATTCGAATTGCAAGAAACATCTAAGGACACACAGCACAGAAGGAGACTCTGCGGAAGTGGCGAATGCCAATCCCTACAGGTGTCCACACTGTCCAAGAACTTTTGCGCAGAACTCACATTTCTTGGCGCATGTACGCGGACATACTGGCGAGCGTCCCTTTAGCTGTACCCAATGCCCGAAGGTCTTTAAAGTCAACCATGATCTGAAGAAGCATCTGCGCAGCCATACGGGCGAGCGTCCTTTTAAATGTCCACATTGCTCAAAAACATTTGCTCAGAACTCGCATTTTCATGCCCACATTCGCTGCCACTCGGACGAGCGAAGCCTTAAGTGTCCACACTGCCCGAGCACGTTCCTCAGGAGCTTCAACCTGAAGGTCCATCTCAGAACTCACACGGGAGAACGGCCCTACAAGTGTTCGTACTGTTCCAAGGACTTTACTCAGAACTCTCATCTTACGGAGCATATGCGCAGCCATTCGACAGCAGATTAA
Protein Sequence: MSGLIDISCIKVEQQQEEETLEHMSCDIDIGPIKIEPEWHETTTPKQEKQLPTKIPSKQKLDRSNQCPHCPRHFERADELAIHIQIHSDKLLYKCNYCPNSFSHKSVFTAHVFGHTGKFPFQCTKCEQGFLKNYELKKHQLAHCEVKVRKQTHSAQCPKNCEHTETRKELLQCPQCPRGFSKCYELQIHLQIHSDKLAYKCAYCPNSFAHKSNFMAHICEHTGNFPHRCLQCLQGFMKRYDLMLHMQTHLQQSLIETKEPTTKIRRVDLKTIKDSLRIKSPGVLIKDTTNISKIKEKPQIETIKKTTLPHPETTKNTPLTTSTDQSLVKTKAEEKPAKPDESFKCTICSRNYANANELRLHEKCFTHSSKYLGKRLHKCNQCSKTFTTLNNLTMHQRVHTGERPYQCPHCPRNFIQNSGLQLHMRQHSGDRPYQCPHCPRVFANNSNCKKHLRTHSTEGDSAEVANANPYRCPHCPRTFAQNSHFLAHVRGHTGERPFSCTQCPKVFKVNHDLKKHLRSHTGERPFKCPHCSKTFAQNSHFHAHIRCHSDERSLKCPHCPSTFLRSFNLKVHLRTHTGERPYKCSYCSKDFTQNSHLTEHMRSHSTAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01557692;
90% Identity: iTF_01550405;
80% Identity: -