Basic Information

Insect: Zaprionus tsacasi
Gene Symbol: ush
Assembly: GCA_018904105.1
Location: JAEIFR010000631.1:906099-927060[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0062 0.43 11.0 0.0 1 20 245 264 245 266 0.90

2 9 0.00027 0.018 15.3 0.8 1 23 325 347 325 347 0.98

3 9 0.047 3.3 8.2 1.0 2 21 385 404 385 405 0.92

4 9 0.046 3.2 8.3 2.9 2 21 795 814 794 815 0.93

5 9 0.0085 0.59 10.6 0.0 3 21 863 881 861 882 0.91

6 9 0.0016 0.11 12.9 0.0 2 23 952 973 951 973 0.98

7 9 0.0036 0.25 11.7 1.3 1 23 979 1001 979 1001 0.99

8 9 0.00065 0.045 14.1 0.8 1 23 1057 1080 1057 1080 0.96

9 9 0.38 27 5.4 0.5 2 20 1187 1205 1186 1207 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0062	0.43	11.0	0.0	1	20	245	264	245	266	0.90
2	9	0.00027	0.018	15.3	0.8	1	23	325	347	325	347	0.98
3	9	0.047	3.3	8.2	1.0	2	21	385	404	385	405	0.92
4	9	0.046	3.2	8.3	2.9	2	21	795	814	794	815	0.93
5	9	0.0085	0.59	10.6	0.0	3	21	863	881	861	882	0.91
6	9	0.0016	0.11	12.9	0.0	2	23	952	973	951	973	0.98
7	9	0.0036	0.25	11.7	1.3	1	23	979	1001	979	1001	0.99
8	9	0.00065	0.045	14.1	0.8	1	23	1057	1080	1057	1080	0.96
9	9	0.38	27	5.4	0.5	2	20	1187	1205	1186	1207	0.91

Sequence Information

Coding Sequence: ATGAAAACTGAAAAGCGCCAAAGCCCCGTGAGCCAAGTGGATGAGGATGTGGATGTGGCTGGGGATGGAGTTGGAGTTGGAGCTGGAACCGAAGCTGCAGCCACAACTCCGGTGGAGTGTAGAGATATTCTGGCACTTGGGGGCAGGTGTGATTGTTCCGATACCACAGAAGAGATGACCGTCGACAGCAGAGATTCCAAAGATTTAAGCGCACGCGAGCTGAGCGAGGAGAAGGAGTCGCAGCCACAGCAGCAGCAGTTCGAGGAGCAGCCCGACGAGGAGCTGGAGCAGGAGCAGATGCAGGGCGATAACCAGACTATAAACGCCTCCGATCAGCCCATGGAGACAGACACAGAGCAGGACATGGCGGAGACGCAGGCTGCACAGCACGAGGATGGGGATCGGCAGGAGACGGATAACTCATCGACCACACCGCCGCGTAGTCCCTCACCCGAATTGATTCCAAAGCTGGAGATGATCGAGCAGCCAGCCACACCGCCCTCAGTTGCAGCCACACCCAGTCCCCCGCCCACACCTACACCTGCACCTGCAGCCATCGCAGTGCTGCCCAAGCTGCGGCTGAATGCGCTGCTCGCCTCCGATCCGGCACTGAAACCGGATGCCAAGGAGCTGAATCTATCGGAGGCACGTATGCTGGGACCACCACCACAGCTGATCAAACCGGATCCCGATCCCAGCAGCCTAGTGGAGCCGGTGCTGAAGCCAACGCGCTTCATGTGCCTGCCCTGCGGCATCGCCTTCAGTTCCCCCTCCACGTTGGAGGCGCATCAGGCCTACTACTGCTCCCATCGCAACAAGGAGGCGGACGAGGAGGCAGGCACAGGCGATAAGGGGCCTGGCAGCGGCTCCTCCGCCAGCGGCGGCAGCTCATCCGCCGGCGCAGGCAGCAACTCGGCTGGAGGCGGTGGCGGCTCGGAGCCTCCAGCCAAGGTGGCACGCACTGGGAAGCAGTACGCCTGCACCCAGTGCTCCTACAGTGCCGACAAGAAGGTCTCCCTCAACCGGCACATGCGCATGCATCAGACCTCGCCCGCCGCCCCCAACAGCCTGCCCGGTCTGCTGCCCGGACTGCAGCAGGCAGCCAATGGCATTGCAGCTGGCGAGGAGAGCTCTAGTCAACAAATCGATCGCTACTGCAGCGACTGTGATATCCGCTTCAACAACATCAAGACGTACCGCGCCCACAAGCAGCACTACTGCAGCTCCAGGCGCAGCGATGGCCAGCTCACACCCAAGCCGGAGAGCGTAGCCGGCGGAGGAGGAGGAGCAGCAGGAGGAGGAGGTGCAGCTGCAGCAGGCGCAGGTGCAGGAGGAGCAGCCGTTGCCACTGCCAGCGGCAAGCACAGTCCGCAGTCCACACGCAACAAGACGCCCACGCCGGCCATGGTGGCTGCTGCTGCGGCTGCAGCTGCTGCTGCCGCTGCCTCACTGCAGGTGGCGCCACCACAGCCCTTCCTGGCACTGCCCACCAATCCGATCATCATTGTGCCCTGCTCCCTGATACGCGCTGCGAGTCTCATTCCGGGGCCACTCACCAGCTCCACCTCGGGCATTGTCAATCCGGAGGCCACTTGCTTCACCCTGGACAATGGCGCACTGAAGCCGTTGGCAACGGCTTTGAATATCAATGCGCTGGCTGGGAATGCCACGCCCACAGGCTCACACACACCCAATCCCATACCCAGCCTGCCGCCCGCCCTGGAGCCAGATCGTCCCGCTGCCAGCAACAGCGTGCCGGAGCCGGAGCCCAAGAGCAGCCCACCGGAACCGAAGCGCAAGGAAGCCAGCGGCATGCGTGAATCCACCCCACTTGATCTGTCACTGCGTCGTTCTCCCATCTCGACGCTGCTGCTGCAACGCCAGCGACTTGCCGAGGAGGCGCTGCTCTCGGCGGTGGGAAAGGAGAACGTGGAGGCAGTCGGAGCTGGCAGAAGCAGCCTGACGCCCGAGCAGATCGTCTGTGCTCCCTCGCTGCCCAGCAGCCCCTCGATGAGTCCCTCGCCCAAGCGACGCGCCATCAGTCCACGCAGCTCTGGAGCCGGCAGCGCTGCCTCCATGTCGCCTCCAGCGCTGACAGTGGGTGTGCCACATCTGCTCGAGAATCTGCCGCCACTGCGCTCCATGCTGCCCGCTGACTTTGCGCTCTCCGAGTCGCTGCTGGCCAAGACGAATCCGGAGCTGGCGCTGAAGCTGGCAGCAGCTGCAGCCGCCGCTGTGGCCGGCAGCAGCAGCCCCGCTGAGCTGGTCAGCAAGCTGGGATTCCCACCCGCAGCTGCTCCTGCAGCAGCTCCTTCTACGGCAGCGTCGACAGCTGCCCCGCCCAGTGGACAACCGCAGATCTACGTGAAGCAGGGCGTATCCAAGTGCAAGGAGTGCAACATCGTGTTCTGCAAGTACGAGAACTATCTGGCCCACAAGCAGCACTACTGCTCCGCCCGCAACCAGGATCCCGTCGAGGCAGGCGACTCCAAAAGCGGCGGCTCCCCGCCCAGTGGAACCAGTGCGCCCGGCAGCGGTGCCGCCTCTGCCGCTGAGACAACTCCGGTGGCCTATCAGCAGCTCATCTGCGCCGCCTGCGGCATCAAGTACACCTCGCTGGACAATCTGCGTGCCCACCAGAACTATTACTGCCCCAAGGGAACACCAGCTGCGGCTGCTGCTGTTGCCGCCGCCGCTGCTGCAGCTGCAGGAGAGTCCGTGGCGCTGCCCAAGGAGAAGTGTGGCAAGTGCAAGACAATCCATGAGGCGGGTCTGCCATGTGCCGCTCCTCCGCCGCCGACACCAGCTGCCAGCTCCGTCTCCGGCTCCGGCTCCGGCTCGGCCAGCGTCAACAAGTGTCCCGTCTGTGGCGTGGTCAGTCCCACAGCCTCGCTGGCACGCAAGCACATGGAGATGCACGGCACCGTGAAGGCGTTCCGCTGCAGCATCTGCCAGTACAAGGGCAACACGCTGCGTGGCATGCGCACCCACATCCGCACCCACTTCGACAAGAAGACGAGCGACGTCAACGAGGAGCACTACATGACCTGCATCTTCGAGGAGGAGCCAGTGGCGCCAGTAGCACAGCCCTCGCTGGGTCTGGAGCTGCCTGAACCGATGGAGACGCAGCAACAGCAACAGCAGCAGCAGCAGCATCCGGCGCAGATCTTCAACTGCGACTACTGCAACTACGCCTCCACCTACAAGGGGAATGTGCTGCGCCACATGAAGCTGCTGCATCCACATGTAGCCATCAGTTCGCCCTCCATTTCGCCCGAGTCGCGGGATCAGGATGTCGCCAGCGCACACGCCATTCCAGAGGTGAATCTGGTCAATGGCGACAGAGATGTAACAAGCTTCCACATCAAGTCGGAGCCACTGGAGGCGCCTGTGGCCACGCTGAGTCTCGTGCACGAGAACAACAACTCGCCCATTGGGACACCACATAGCCACATCAAGGCTGAACCTCTGGACATGGGCCTCGATGTATCATCGCCACCCACACTGCCTCCGCCTCCGCCCATGGCCAACTCGCCGCTGGGCGAAGCCCTCAAGAAGTACTGCTCCACCTGCGACATCTCGTTCAACTACGTCAAGACGTATCTGGCCCACAAGCAGTTCTACTGCAAGGGCAAGCTGCAGCGGCCCGAGGCCAGCGACAGCCCCAGTCCCAATGCGGTGGGCAGTGCCGCCATGCCGCTCCAGTCGCCCAGCGAGCTGCTGCTGCTCCAGAAGAACAAGGAGAACCTGCAGGAGGCGGCCATTTGA
Protein Sequence: MKTEKRQSPVSQVDEDVDVAGDGVGVGAGTEAAATTPVECRDILALGGRCDCSDTTEEMTVDSRDSKDLSARELSEEKESQPQQQQFEEQPDEELEQEQMQGDNQTINASDQPMETDTEQDMAETQAAQHEDGDRQETDNSSTTPPRSPSPELIPKLEMIEQPATPPSVAATPSPPPTPTPAPAAIAVLPKLRLNALLASDPALKPDAKELNLSEARMLGPPPQLIKPDPDPSSLVEPVLKPTRFMCLPCGIAFSSPSTLEAHQAYYCSHRNKEADEEAGTGDKGPGSGSSASGGSSSAGAGSNSAGGGGGSEPPAKVARTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAAPNSLPGLLPGLQQAANGIAAGEESSSQQIDRYCSDCDIRFNNIKTYRAHKQHYCSSRRSDGQLTPKPESVAGGGGGAAGGGGAAAAGAGAGGAAVATASGKHSPQSTRNKTPTPAMVAAAAAAAAAAAASLQVAPPQPFLALPTNPIIIVPCSLIRAASLIPGPLTSSTSGIVNPEATCFTLDNGALKPLATALNINALAGNATPTGSHTPNPIPSLPPALEPDRPAASNSVPEPEPKSSPPEPKRKEASGMRESTPLDLSLRRSPISTLLLQRQRLAEEALLSAVGKENVEAVGAGRSSLTPEQIVCAPSLPSSPSMSPSPKRRAISPRSSGAGSAASMSPPALTVGVPHLLENLPPLRSMLPADFALSESLLAKTNPELALKLAAAAAAAVAGSSSPAELVSKLGFPPAAAPAAAPSTAASTAAPPSGQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQDPVEAGDSKSGGSPPSGTSAPGSGAASAAETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGTPAAAAAVAAAAAAAAGESVALPKEKCGKCKTIHEAGLPCAAPPPPTPAASSVSGSGSGSASVNKCPVCGVVSPTASLARKHMEMHGTVKAFRCSICQYKGNTLRGMRTHIRTHFDKKTSDVNEEHYMTCIFEEEPVAPVAQPSLGLELPEPMETQQQQQQQQQHPAQIFNCDYCNYASTYKGNVLRHMKLLHPHVAISSPSISPESRDQDVASAHAIPEVNLVNGDRDVTSFHIKSEPLEAPVATLSLVHENNNSPIGTPHSHIKAEPLDMGLDVSSPPTLPPPPPMANSPLGEALKKYCSTCDISFNYVKTYLAHKQFYCKGKLQRPEASDSPSPNAVGSAAMPLQSPSELLLLQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01552032;
90% Identity: iTF_01554969;
80% Identity: -