Ztsa001547.1
Basic Information
- Insect
- Zaprionus tsacasi
- Gene Symbol
- zfh1_3
- Assembly
- GCA_018904105.1
- Location
- JAEIFR010000295.1:3073153-3099940[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.003 0.21 12.0 1.6 2 23 78 100 77 100 0.95 2 9 0.00056 0.038 14.3 0.4 1 23 299 321 299 321 0.97 3 9 1.6e-05 0.0011 19.1 0.6 2 23 335 356 334 356 0.97 4 9 7.6e-05 0.0052 17.0 6.0 1 23 365 387 365 387 0.99 5 9 0.0057 0.39 11.1 2.2 3 19 395 411 393 414 0.94 6 9 0.008 0.55 10.6 0.7 2 21 662 681 661 682 0.92 7 9 2.7e-05 0.0019 18.4 0.5 1 23 1045 1067 1045 1067 0.94 8 9 5.8e-05 0.004 17.4 7.4 1 23 1073 1095 1073 1095 0.98 9 9 0.0029 0.2 12.0 4.3 1 21 1101 1121 1101 1122 0.96
Sequence Information
- Coding Sequence
- ATGTTGTCCTGTTTGGCGCCATCGTCGACACGTTTTGGCCAAGAGGATAATATAATACAGCAGAGCATGCCATCGTCCACAGCCTTCTCCATGCAGTTTCCCTCCTTGGCCTCCACTCTGCATCATCATCAAGCACACAGCAAGCCCAGCGAGCAGGAGGAGGAGGTGGAGCCGCATGGCGGGCACACAGCGAGTGCAGCGACGGGCAGCGCTGGCGGGGATTACCTGGTCAAGTGTACGCAGTGCCACAAGCGCTTCAATGAGTATCAGTCGCTTAGCGAGCACATTGCCAGCGAACATCCCCACGACAAGCTCAACTATGAATCCGCCAATCTACGTGCCGAGGTGCAGCCCGAGAGCGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGCCGCTCTGCTCCCCCATTGTGGCTGCAGTGCATCCGAGTGATCTCTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCCGCCTACGATCTGGATCTGAGTGCGCCACGTTCCACCTCCAGTCCCGGCTCGACGACAGGCGACAGCAGCAGCGCCACCGCCAACGCGAGCAACGCCAGCGCCAGCGCCTTTCCCTGCATGCAGTGCAACGCCGCCTTTGCCCATCGCGAGCAGCTCGAGCAGCATCAGCTGCTCCACTCGCCCAGCGGGCAGCCCACGGCGCAGAATGTGACGCAGACGTGCAAAATATGCAACAAGGCATTCGCGAATGTTTACCGCCTGCAGCGGCACATGATCAGCCACGACGAGTCGGCGCTGCTGCGCAAGTTCAAGTGCCAACTGTGCGAGAAGGCATTCAAGTTCAAGCATCACCTGAAGGAGCATGTGCGCATCCATTCCGGCGAGAAGCCCTTCGGCTGTGACAAGTGCGGCAAACGTTTCTCACACTCGGGCAGCTACTCCTCCCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGATAAGAATGCCAATGCTGGACGCACATCATCTTCGGAGCTGAGCAAACGTGGCAGCAAGCAGCCGGAACCGATGCTACCCAATCCCATGAATTATTTTGCTGGAGAAGCACAAATGCAGGTGTCGCCGCCAACGGCCAATGGACCAGCCGCCTTCTATCCAAATTATTTGATGCATTTCCCTAATCCCTTCATGGCTGCACTGGATCCGAGTATACATCCCTTTGCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATGAGGTGCCACATTATGAGCCCAGCAAGGATGATGATGAGACACCCGATGAGCCTAAGCTTGTCATGGATCTGGAAGAGTCTGAGGTGAAAGCGCCGACACCGGCGCCAGAGTTGCCTGCGGTTGTGGAGACAGTTGCTGCCGATGTTGCCGGTTCGTCGTTCAAGCAGGAGCAGAGTCGGGAAGCAACGCCTGTGCCTGTAGAGAGTGCTCCTGGCACGCCCAAGTCCATTAAAATCGAACAGGAAGAGGAAGCGACGCCTGTGCAGGAATCACGCCCACAAACACCACAAGATCTGCGCTGCAGTCGCTGCTCAAAGCAATTCAATCATCCCACTGAGCTGGTGCAGCACGAGAAAGTGCTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCTGCCAGTGATGCTGACGAAGATGAGGAGGAGGAGGAAGAGAATCCACGACAGGATTTCAATGCCAGCAACAGCGACAGTGGCGAGCGTAAGGTACGCGTACGCACCGCCATCAATGAGGAGCAGCAGCAGCAGCTGAAGCAACACTACGCACACAATGCACGTCCAAGTCGCGATGAGTTCCGCATGATCGCCGCACGGCTGCAGCTCGATGCACGCGTCGTCCAGGTGTGGTTCCAAAACAATCGCTCGCGGGAACGCAAAATGCAGAGCTATGTGAGCAATACAGAGCAACATGCTGCCGCCACGACAGCAGCAACAGCTCAGCCACGTGGTGCTGGTGCCGCTGCCATTGCCGGTGCTGCTGCTGGTGAGGATCAGCCATTGGATTTGTCTGTGAAACGTGATGCATCGCCGCTCTATGGCCTGGCACCACAACCGGCAAGTGCGAGTGAGGCGCCCGTTGATTTTCAGGAGACAATGGCCATCAATCTGAGCCGCAAGCTATCCAGCTCTGCATCCATGTCGCCAGCATCGTTGTCACCCTGCTCGGCTGCCTCATCGCTGCAACAGTCGGCAGCTGCTGCCGCCGCTGCAGGCATCTACTTTACGCCACCCTCGCCGCCCAATATGCATGAGGCAGCACCCTCGATGCCGCCACATGGTGCAGCAGCAGCAGCAGCTGTGGCACGTGTCCAAAGCTTTCCCGGCCTGCCGCCCTACATGATATCCCGCTCCATGGAGGCACTCTTTCAGATGCGACCCGGCGGCGAATATGCACCCAATCCGCTAATGAACAGTATTAAGCTGAACGACTATCGCGGCACCAGTCTCAGTCCAGGTGGCTCCGAGAAGCGTTCGTGGCGCGACGATGATTCGCGCATCTCGCACGAGGATGACTATGTGCTGAGCGTGGCCGGCGGACTGCTGCCACCCAAGCCGAAGCGTGCCAAGGCCGAGACACATGGTCATGCCGGTGATCCGGATCTGCCCTTCATCTGCGATCAGTGCGATAAGGCGTTCGCCAAGCAGAGCTCTCTGGCGCGTCACAAATACGAGCATTCCGGTCAGCGACCCTATCAGTGCATGGACTGCCCCAAGGCATTCAAGCATAAGCATCACTTGACGGAGCACAAGCGTCTGCATTCCGGCGAGAAGCCCTTCCAGTGCTCCAAGTGCCTGAAACGCTTCTCCCACTCGGGCAGCTACAGCCAGCACATGAACCACCCCGCTGCCAATGCCGGCGCGGGGACAACGCGTCCACGTCGCGGTCCATCGGCATCGGCAAGGAACAGTAACCACCATCATAACCTCCACCATCCACAACACAATCAGAATAACAACAGCTCCTCGGTCAGCTATCCACATCAGCTGGCCGCCATGACGGCATTCCAGCAGCAGCGTCTGCAGCAGCGTCTACCATGCCAGCAATTTGGCTGGCCACCGTCCGTGCCTGGTGCTGGCATAATGCTGCCTCCACCGCCCAGCAATAGTCTGCAGCAGCAGCAGCGTTCCACGTTGCCACCACCACAACAACCTCCGCCCCCGCTGTTGAGTGGAGCAGCAGGAGGAGCAGTGGGTTACGGTCCTCAAACGCAGCCACCACCACCGCCGCCGCCGCCCTCGTTCTTTGCCAGCCCACTGCATCATGCAGCATTGATGGCACCGCCACATCCGCTGCCGAGTGAACGCTTCTCGGCGCCCCTAACGCCGCCCACGGGCGCACCACCGTCCCATGGCGGGCACGCCTTCAATTTCTTCAATGCCAAAATGCTGCTGAACTGA
- Protein Sequence
- MLSCLAPSSTRFGQEDNIIQQSMPSSTAFSMQFPSLASTLHHHQAHSKPSEQEEEVEPHGGHTASAATGSAGGDYLVKCTQCHKRFNEYQSLSEHIASEHPHDKLNYESANLRAEVQPESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPLCSPIVAAVHPSDLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAYDLDLSAPRSTSSPGSTTGDSSSATANASNASASAFPCMQCNAAFAHREQLEQHQLLHSPSGQPTAQNVTQTCKICNKAFANVYRLQRHMISHDESALLRKFKCQLCEKAFKFKHHLKEHVRIHSGEKPFGCDKCGKRFSHSGSYSSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDKNANAGRTSSSELSKRGSKQPEPMLPNPMNYFAGEAQMQVSPPTANGPAAFYPNYLMHFPNPFMAALDPSIHPFALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEVPHYEPSKDDDETPDEPKLVMDLEESEVKAPTPAPELPAVVETVAADVAGSSFKQEQSREATPVPVESAPGTPKSIKIEQEEEATPVQESRPQTPQDLRCSRCSKQFNHPTELVQHEKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASDADEDEEEEEENPRQDFNASNSDSGERKVRVRTAINEEQQQQLKQHYAHNARPSRDEFRMIAARLQLDARVVQVWFQNNRSRERKMQSYVSNTEQHAAATTAATAQPRGAGAAAIAGAAAGEDQPLDLSVKRDASPLYGLAPQPASASEAPVDFQETMAINLSRKLSSSASMSPASLSPCSAASSLQQSAAAAAAAGIYFTPPSPPNMHEAAPSMPPHGAAAAAAVARVQSFPGLPPYMISRSMEALFQMRPGGEYAPNPLMNSIKLNDYRGTSLSPGGSEKRSWRDDDSRISHEDDYVLSVAGGLLPPKPKRAKAETHGHAGDPDLPFICDQCDKAFAKQSSLARHKYEHSGQRPYQCMDCPKAFKHKHHLTEHKRLHSGEKPFQCSKCLKRFSHSGSYSQHMNHPAANAGAGTTRPRRGPSASARNSNHHHNLHHPQHNQNNNSSSVSYPHQLAAMTAFQQQRLQQRLPCQQFGWPPSVPGAGIMLPPPPSNSLQQQQRSTLPPPQQPPPPLLSGAAGGAVGYGPQTQPPPPPPPPSFFASPLHHAALMAPPHPLPSERFSAPLTPPTGAPPSHGGHAFNFFNAKMLLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01558932;
- 90% Identity
- iTF_01558932;
- 80% Identity
- iTF_01558932;