Basic Information

Gene Symbol
JARID2
Assembly
GCA_018904105.1
Location
JAEIFR010000049.1:3607528-3615748[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.8e-11 8.7e-08 32.3 0.0 41 89 1757 1803 1751 1803 0.87

Sequence Information

Coding Sequence
ATGGTTGTCTCAAAAGACAACAAGCGTCGCCGTAAGGAAACCGAGACACCGCCAACGTCATCGTCGGCGGCGGCGCTGGCGGCAGCAGCAAATGCCGCTGTGGCTGTGGAGTCCTCACCCGAGATGCCTAAAAGGACGAAGGTGCAGGCACAGCGTAAATTCGCGCAGGGTCAAAGTGCGCCCAGCTCAGCGGGTGCATACAGTACGGTCAATGTTGCAGCAGCAGCATCAGCAGCGTCTGGTCCAAGCACCTCAGCCGAAAGTCATCAGCCTCCGATTGAGATACTGCCCAACAAGTGTCCCAAACCGCAGGATTTTCTTACGTTTCTTTGCTTTCGCGGCACATCCGCGTTGCCTGCCCATTTGGATTATCTTAATCAAGGCAAGTCCAAGCAAAACGAAGTCCCGCCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTTTGATGCTGGCCGGAGCAGTGCGTAAGCGAGCTGAGGTTATAACCGAAGGCAATAGACGAGGCGCGCGACGCACAGAGATGGCACTGAAGCGTCGCTCCAATCGTGCCAGCAATACAAACAAGGATAAGGAGAAGGATATTGAGGAACAGCAGCAGCAACAGCAGCAGAATAATGTTGCTGCTGATGGTGAGGAGGAACACGCGGATGGGGATGAGGAGGAAGAGGATGAAGAATTCTTTTCAGCACACGATGCCAGCTCACGCAATGGGGCTGATGAATCGCTATCCAAGTCAGAGACAACGCTCTCGAATACCAGACGAGGTCGTGGTCAGGTCACAAGGAAGTCAGCGGCAGCATCGGCAGCAGACTCACCTGTTTCCACAGTGGAGAAGGACAAAGATAAGGATAAGGATAAGAAGAAGGAAAAGGCGCCAGTGAAGCGATTGCGACAACGTGAATCACCAATTTTTATACCATCACCCGAATCATCCGGCCGCATGACACGACAACGTGCTTTTTTTGAGCCCGTCAAAGTGTTGCCCAAGGAGGAGCAACCAGAGGAGGAGAAACACGAGGAGGAGGAGGAGACAGAAAAACCATCCGCGGAGTCTAAGGAACCGGAGAAACCACAAGAGAAGCAACAACAGCAGGTCGAGAAGACCAAGGAGAAGACCAACTCCAGCATTTATGCCAAAGATGCTGCCAAGCAGCAGCAGCAGCAACTGGAGAATGGAGGCACTGCATCCGATTTGGCTGCCGAGCAACAGAAAGCCCTAAACGTTTTCGATTTCAGCTCGGATGATGAACAACCTTTGGCCAAGGCCATCAAACTGAAAAAGGGCGCAAAAAAGGGTGCTGCAGCGGGAGGAGCGGCTCCAGCCAATGCACGTGGACGAAAATCTGCCGGAACTGCAGCAAAAAAGCAGCAGCAACAGCGCGAGGAAGAAAAGGAGAAAGAAAAGGAAAAGGAGAAGGAAAAGCCAGAGCCGACACCAGAAGAACCGCCGAGCAAAACAAAGCGTGGCAAAGCGGTCAAAAAGAAAGTTGAAGAAGACCCCGAGCCAGAGGTGGAACTAACGCCACCATCACCCAAGAAGCAAACCAATAGCAACAACGCGCGTCCCTCGCGTCGTCAGGCACAGGCCAAAGCTGGCAAGGCGCAGACGCAACCTGCATCCGAACGTTCTGTGAGTCCAAGTCCACAGCGCAGTCAGCGACCATCGCGCAAGACAAAGGAAGCGGCTGCCATCTATATGGGCATCATTGGACACAAGTTGCAGCTGGCAGATGATGAAGACGATGATCTGTCGCTGGACAGCTTTCCAGAAATACCCAATGTGAAGCAAATGGAGAAAATGGAGAAGGAAATCAAGAAGAATGCGGCGGGAAAAAAGTCACCAAAGCCAAATGCAAAAGTAGAGACAGAAGGAGCAACTGCATCAGCAACAGTTGAAGAACAGCCCGAGGCAGCCCCCGTTGCAGCGCCGCCGACGCCGGCAAGACGTGGTCGTCCACCCAAGCAGGCAAAAGGTGCAGCCGCGGCGGCATCGGCAACGGCGCCAACCGCCAAACCTCAAATCGAAGGAATGTTGGTAAAAAAGGGTGCACTGGCGCTGGCAAAAGCCAAGTCCGAACAGCAACAAAAACAGCAGAAGGTCGATTCCGATGCGGAAGAGGACTTTCTGATCAATGAGGAACTAAACGAAACCAAGCGTAAGCTGGAGAAGAGCTTTAGCGACTCCGATGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATGAACTGCACACCGCCCAAGCTGACTTCACCGTTTGGTGGCATCGGTGGCTGCACCACGCCCACCACGCAACTAACAATGTTGCCGCTGACCACGAAACCATTGCCCTTCTCCATATCGCCGCCAAGTTATGCGCCCGCTGCGGCAGCCGCCCTCAAGGCCATGGAGAAGAAGTCACCGGTGCCCACTTCAAAGATTCTCAATGTGCCCGCCACATATGCGCTGCCTGGCACGGGGCCTGGTGTGGGCACTACTGTTGGCGGTACTGTGGGATTTGTGAAGACTTCATCGTATCTGCCGCAGGCTTCGCCGCATTATCACACACCTTATGTGCGTCCAGCAACGTTTGGAGCGGGCAGCAAGACACCGCAGCAGCAAATGCCAACACTGACGACGTCAGCGTCGAGTGTTGTTGCCTCTCCGCTGAAATATCAAACGCCGCCCACTACCTATCCGCCACCCATTGAGGCGTATCAGTGTCCTAAGATTAATCCAAATTTTTTAACACCCAAATACGATCGGAGCAGCGCGTTGCCGCGCGCCAACAACAACAACATTGTCATAGGGAACAGCAGTAGTAGTAATAGCTTTGCGGCACCAACTGGAGCGACACGGACGACACTCACTAGTCTGGCCACGCCTACAGCGGCAAGATCTTTGGCATTGCCAGCGTCAGCCTGGCACAAAGCTCTGGCCCCAGATAATACCAAGTGCACTTTGGGCAAATGCGGATCTATACATAAACCCGTGCTGGGTCCCGTAGTGCCCACAGAGGGTTACTTTGGGGATCAGCTGACAAGCAAGGAGCGTCGCAAGGCCAAGGTGAATATGACGCATGAGCAGATACAAAAATGGCTCATCGAATGCAGCTCGAATCCCGATGAGATTCAAGATGATCTCGAGGATGACTATGATGATAGCATGCGGCCACAGCAATCGCAGACGCCACCGGGACCCAATCGCGATGACAAAGAGAGCACCAGCTTCAGCAGTTCCTCGAACAAGACACGCGGTGAGTTGGGCAAGTCGGAGAGTGCTTGGTCCGCCAAGGGGCCCTCGCTGAAGGCGACTCCTGTGCTGGTCAGTGCAGCAGCAGCAGCTGTGGCAGCGGCAGCGAATCGCAAGGAGGCAGAAGCAGATACGGATACATTGGACTTCGATAAGTGTTCAACAACGCCGGTGAATCTCAGCCAGAAATCGCAGCTGGACTCAGTGGTGAGTGAGAGGAAATTGCCGGAGAGGAAGGGTAGGAATGCCGGAGGTAATAGCGTCAAGACGCCAGCAACTATTGCAGGCTCACCCGGTGGCAATAAGCGCAGTGCAACAACCACGCCCACGGCAAGTGCTACACCTCCACCGCCCACCAAACAGAAGGCGGGCAACAGAAAGAATGCAAACGCATCAGTGGCTGCAACACCCTCAAGCAGTGCCAGCAACACGCCTCCCTCGCAGACCACAACAACGGGAGCCAATGCAGACTCCCCAACAACAACACCAACGAAACGCACACCGATCTATCAGAGTCCCAGCAAGACGAAGGCACAGCAGACGCAGCTGGACAACAACAATAAGCAGAACAAGTCGCAGCAACAGAACGAAAAGACATCGACCACATCGGTTTATGCCTTCGGCAAAGATGAGGAGACAACGAACACAGCAGCTGCAGTCGGCAAAGCGACGAATCGTCGTCGTAATGCCATCGATAGCGATGCTGCAGTACCAGCGCCAGCGCTCAGTGAACTCCCAGTGAGAAGCTGGACAAAGCCCAAGGGAACGGGCGCAGCTGCGAGGAATGCCAAGAAACAGCAGGCTGCTGGAGGCAAGCAGAAACAGGCAGCAGCCAACGCTAGCACTGGTGGGGACTCAGATGCTGAGGGTGCTACCTTCTATATACCTCTGCTACAGGGTGCCAGTGGTGGTGATGGCGGCATACAGGGTGTGGCAGTTAAACTGGGACGTGAAGGACCCGATGGACCCAATCAAAAGGTCGTGATGCAGGCCACATTGGTGACCAAAGCACAAATGGATACCAATTCGAAACCGTTGCCCGACAATGAGCTGGTGAAGACCCTTCTCAATGCTGCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGAAGTACAAAGATGACACACCCATTAAGATGGCCAATAACACAGCGTTCCCGCGTCACGATGATCCCACACAAATGGTTGAGGCGCCCATATTTAAGCCCACCGAAAAGGAGTTTGCTGATCCCATAGAGTTTATCGAGCGTATAACACCGATTGCCGCCAGATTTGGCATCTGTAAGATTATACCTCCGGCTAGCTTCAAACCCGAATGTCGCATTTCGGATGAGATGCGTTTCACGGCGTACAATCAGTATGTGCACAAGATGTTGCACCGCTGGGGTCCCAGTGCCAAGGAGCTGAGTGCCATTAAAGAAGAGCTTGGCGGACTCAAAGAGGTCATCGAAAAGAAGAAGTGGGCACGTGTTGCTGAGGAAATGTGTATACCGAAACTGGCACAGGATCGTGTAACCAAACTGGATGACATCTACTGCAAGTATTTGTTGCCCTACGACACATTGTCTCCGGCGGAGCGACAGAAGCTCTTCGATGAGGTCGAAGCGGATTGGGCAAAACGTGAGGCACGTGCGCGTCGCAATGCGGATCGATTTGTCAATAGCACAGAAAGTGTTTCCAACGAAGAGGATGATGTGTCCACCGATGAGGATGAGGAGTCCGAGGAGGAGATCGATGGTGTGTCCATGGAGTGCATTGTCAAGGGACGCAGCATGCCTCTCAGTCAGTTCTTTCGCATTGCACGAAACACAATGGCGCTTTGGTTCAAGAGCACCGATCCCACGGTCAATGAGGTGGAAGCGGAATTTTGGCGTCATGTGGCCGTGCGTGACAGTCATGTGTGTGTGCATTCTGGCTCCATTGATAGCTCTGGCTGGGGTTATGGTTTTCCCAGTCCTGGTCCCAAAGGCAAAGGCTCCAACTATGCGCGTCATCCCTGGAACCTAAAGGTGTTGACAAATAATGCTGGATCTGTTCTGCGCTCGCTGGGACCTGTCATGGGCGTCACAGTGCCCACACTGCATGTGGGTATGCTTTTCTCCGCCTGTTGTTGGTATCGGGATCCACATGGACTATCTTGGATTGAGTATCTACATACGGGTGCCTCTAAACTATGGTACGGAATACCTGACGATCAGAGCGCTAATTTCCGTTCGGCGCTGACGACCCTGATTCCGACACACTGTCAGAACAAGACAATATGGTTGCCCTGTGATACGGTGATGGTGCCACCGCACATGCTCACCGACCGTGGCGTTTCGCTGTGCCGCATTGAGCAAAAGCCCGGCGAGTTTATTGTAGTCTTTCCGCGTGCCTACACCTCCAGTTTGGCCACCGGCTATGTGGTATCTGAAAGTGTTTACTTCGCCACTATGTCATGGCTGGATTTGGCTAAGGATGACTTTAGGGACATTCATGAAAGCTGTGAGCCGGCCATGTTCTCATTGGAGCAGCTGCTCTTTGCTCTGGGCTATGACCAGCGTGTCAACTCGGACACATTGCACCAAATGCTGCCCATGCTGAACGAGGTTTGCGAGAAGGAGTCGGCGGCACGAGAACAACTTAGGGCGGCTGGAGTAACATCCACCGAGAAAGTGCAGGCGGAGAAGGGTCAGAAGGCGAAGAAGACACAACAGCCACCGCACAAATCCATCGAGAGTGAATGTGATCTGTGCCGTGCAAATTTGTACATATCGATGGTGCGCACCGAGGATGGCAACGTTTACTGTTTACAGCATGCTCTGAAAAATCTCAACAATGGCAACATACAGGCCAAACAATGCAAGCTGATATATGCCTACAACGTGGATGATATTCAGCAACTGATACGGCAGCTACAGGAGAAGATTCAACACAAGGCGGCTGTGAAGAAAAAGTAG
Protein Sequence
MVVSKDNKRRRKETETPPTSSSAAALAAAANAAVAVESSPEMPKRTKVQAQRKFAQGQSAPSSAGAYSTVNVAAAASAASGPSTSAESHQPPIEILPNKCPKPQDFLTFLCFRGTSALPAHLDYLNQGKSKQNEVPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLMLAGAVRKRAEVITEGNRRGARRTEMALKRRSNRASNTNKDKEKDIEEQQQQQQQNNVAADGEEEHADGDEEEEDEEFFSAHDASSRNGADESLSKSETTLSNTRRGRGQVTRKSAAASAADSPVSTVEKDKDKDKDKKKEKAPVKRLRQRESPIFIPSPESSGRMTRQRAFFEPVKVLPKEEQPEEEKHEEEEETEKPSAESKEPEKPQEKQQQQVEKTKEKTNSSIYAKDAAKQQQQQLENGGTASDLAAEQQKALNVFDFSSDDEQPLAKAIKLKKGAKKGAAAGGAAPANARGRKSAGTAAKKQQQQREEEKEKEKEKEKEKPEPTPEEPPSKTKRGKAVKKKVEEDPEPEVELTPPSPKKQTNSNNARPSRRQAQAKAGKAQTQPASERSVSPSPQRSQRPSRKTKEAAAIYMGIIGHKLQLADDEDDDLSLDSFPEIPNVKQMEKMEKEIKKNAAGKKSPKPNAKVETEGATASATVEEQPEAAPVAAPPTPARRGRPPKQAKGAAAAASATAPTAKPQIEGMLVKKGALALAKAKSEQQQKQQKVDSDAEEDFLINEELNETKRKLEKSFSDSDDEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNCTPPKLTSPFGGIGGCTTPTTQLTMLPLTTKPLPFSISPPSYAPAAAAALKAMEKKSPVPTSKILNVPATYALPGTGPGVGTTVGGTVGFVKTSSYLPQASPHYHTPYVRPATFGAGSKTPQQQMPTLTTSASSVVASPLKYQTPPTTYPPPIEAYQCPKINPNFLTPKYDRSSALPRANNNNIVIGNSSSSNSFAAPTGATRTTLTSLATPTAARSLALPASAWHKALAPDNTKCTLGKCGSIHKPVLGPVVPTEGYFGDQLTSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLEDDYDDSMRPQQSQTPPGPNRDDKESTSFSSSSNKTRGELGKSESAWSAKGPSLKATPVLVSAAAAAVAAAANRKEAEADTDTLDFDKCSTTPVNLSQKSQLDSVVSERKLPERKGRNAGGNSVKTPATIAGSPGGNKRSATTTPTASATPPPPTKQKAGNRKNANASVAATPSSSASNTPPSQTTTTGANADSPTTTPTKRTPIYQSPSKTKAQQTQLDNNNKQNKSQQQNEKTSTTSVYAFGKDEETTNTAAAVGKATNRRRNAIDSDAAVPAPALSELPVRSWTKPKGTGAAARNAKKQQAAGGKQKQAAANASTGGDSDAEGATFYIPLLQGASGGDGGIQGVAVKLGREGPDGPNQKVVMQATLVTKAQMDTNSKPLPDNELVKTLLNAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYKDDTPIKMANNTAFPRHDDPTQMVEAPIFKPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKEELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRFVNSTESVSNEEDDVSTDEDEESEEEIDGVSMECIVKGRSMPLSQFFRIARNTMALWFKSTDPTVNEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNAGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRSALTTLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNSDTLHQMLPMLNEVCEKESAAREQLRAAGVTSTEKVQAEKGQKAKKTQQPPHKSIESECDLCRANLYISMVRTEDGNVYCLQHALKNLNNGNIQAKQCKLIYAYNVDDIQQLIRQLQEKIQHKAAVKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-