Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 8.2e-06 0.0099 15.8 0.6 14 44 74 101 68 101 0.88

2 6 0.003 3.7 7.6 3.8 2 41 122 157 121 165 0.85

3 6 0.012 14 5.7 2.9 2 41 150 185 149 187 0.87

4 6 0.0011 1.4 8.9 0.8 2 40 178 212 177 215 0.88

5 6 1.2 1.5e+03 -0.8 0.2 18 27 221 230 216 239 0.81

6 6 0.00046 0.56 10.2 2.3 5 44 237 272 233 272 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	8.2e-06	0.0099	15.8	0.6	14	44	74	101	68	101	0.88
2	6	0.003	3.7	7.6	3.8	2	41	122	157	121	165	0.85
3	6	0.012	14	5.7	2.9	2	41	150	185	149	187	0.87
4	6	0.0011	1.4	8.9	0.8	2	40	178	212	177	215	0.88
5	6	1.2	1.5e+03	-0.8	0.2	18	27	221	230	216	239	0.81
6	6	0.00046	0.56	10.2	2.3	5	44	237	272	233	272	0.85

Coding Sequence: ATGGATCAAGTGATAGATGTGGGTTGTGTCAAGGAGGAGCACTGTGAGGCAATTTGCAATATGTTCAGGACACAGGATTGGCAATTAACGATGCGACACAGAGACTTGGGAATCGTGAAAATCGAACAGGACATGAGCATAGTGTGGCAAAGCGCTAACACTGCTGCAGTGGTCAATAAGGAAGCACATTCAGACAAGCAAAAGAGCGTCACATCCAGCGAGAAACCATTTAAGTGTCCACACTGCACAAAGGACTTTGCCACTAGCAGCAATCTAAAGGTTCATCTCACGCGCACCCACTCCGGCGACCAGGAGCGTCCATTTGAGTGCCCCACCTGCCCGAAGTCATTTGCCACCAACGACAACCTTCAGAAGCACATTCGCAGGCATTCGAATGAGCGAAACCTCAATTGCCCACACTGCCCAAAGGCTTTCGCCACCAAGGATAATCTGCAAAAACACATTCGCCGCCACTCAAGCGAGCGCAACCACAACTGTCCGCACTGTCCCAAGGCATTTGCCACCAACGACAATCTGCAGAAGCACATCCGACGACACTCCAGCGAAAGGAATCTTCAGTGTCCACACTGCCCCAAGGCTTTTGCGACAAACGATAATCTCCAGCGACACATACGCGGCCACACTGGCGAGCGGCCCTTTAAGTGTCCGTACTGCCCCAAACCGTTTGCCCAAAACAGAGATCTTAAAGCGCACATCTTGGAGCATACTGGGGAAAAACCCTTCAAATGTCCCCACTGTCCCAAGGCGTGTGTGCGCAGCGAAGGTCTGAAAAAGCATATTTCGCGACTCCACAAGGACATAGAGCCACCGACGGTGGTGACAACGGCAACTAAACAATGGCAGACTCCAACTGAGGTCAAGTCCTACATCAACGATGCCAATGGCAGAGTCTTCATGTACAAATACGATCTGACTAAACAGACTCGAATGCCCACGGGCGAGGCGTAA
Protein Sequence: MDQVIDVGCVKEEHCEAICNMFRTQDWQLTMRHRDLGIVKIEQDMSIVWQSANTAAVVNKEAHSDKQKSVTSSEKPFKCPHCTKDFATSSNLKVHLTRTHSGDQERPFECPTCPKSFATNDNLQKHIRRHSNERNLNCPHCPKAFATKDNLQKHIRRHSSERNHNCPHCPKAFATNDNLQKHIRRHSSERNLQCPHCPKAFATNDNLQRHIRGHTGERPFKCPYCPKPFAQNRDLKAHILEHTGEKPFKCPHCPKACVRSEGLKKHISRLHKDIEPPTVVTTATKQWQTPTEVKSYINDANGRVFMYKYDLTKQTRMPTGEA

Sequence clustering based on sequence similarity using MMseqs2