Basic Information

Insect: Zaprionus nigranus
Gene Symbol: pita
Assembly: GCA_018903425.1
Location: JAEIGD010000044.1:770651-772683[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0047 0.43 11.4 0.2 1 23 235 257 235 257 0.87

2 9 4.7e-06 0.00043 20.8 2.9 1 23 263 285 263 285 0.94

3 9 3.5e-05 0.0032 18.1 2.1 1 23 291 313 291 313 0.99

4 9 0.00026 0.023 15.4 0.2 1 23 319 341 319 341 0.96

5 9 0.00018 0.016 15.9 0.1 1 23 347 369 347 369 0.94

6 9 9.2e-06 0.00084 19.9 0.5 1 23 375 397 375 397 0.97

7 9 0.0033 0.3 11.9 5.7 1 23 403 425 403 425 0.98

8 9 0.062 5.6 7.9 0.0 2 23 461 482 460 482 0.96

9 9 0.0021 0.19 12.5 0.7 1 23 488 511 488 511 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0047	0.43	11.4	0.2	1	23	235	257	235	257	0.87
2	9	4.7e-06	0.00043	20.8	2.9	1	23	263	285	263	285	0.94
3	9	3.5e-05	0.0032	18.1	2.1	1	23	291	313	291	313	0.99
4	9	0.00026	0.023	15.4	0.2	1	23	319	341	319	341	0.96
5	9	0.00018	0.016	15.9	0.1	1	23	347	369	347	369	0.94
6	9	9.2e-06	0.00084	19.9	0.5	1	23	375	397	375	397	0.97
7	9	0.0033	0.3	11.9	5.7	1	23	403	425	403	425	0.98
8	9	0.062	5.6	7.9	0.0	2	23	461	482	460	482	0.96
9	9	0.0021	0.19	12.5	0.7	1	23	488	511	488	511	0.91

Sequence Information

Coding Sequence: ATGCCCAGCTATATTTGCCTCGATTGTCGGCTGCTCTTCGAGCATTGTTACCGTTTTAAGCAGATGTGCAAGCATGCGGAGACACTTCTGCGACAATTTCCACTTACTGGGAAATGGCCGGAGCCACTGGAGAAGCCTCGTGCTCCAGTGGTGCCTGGCCACATGGGCCGCAAGGAAACTAGTGAAAAGCAGCCCAAGAAACTGCTTAACTCCATGGCAAAGTCACCCAACGTGCTCATTGACAACGTGCAGGTGATGGAAACAAGTTCTTTACCCAAGAAGCTACTTAACGTGGCCGCTGGAAGTAATGCAGAGCCGCCTATCCCAGCACGGGGCTCTCCAGCAAAGCGCCCTAGCTCGCAATCGTATCAGGTGAAGGTGGAGAACAATCAGGAACTCTCCATGGATGATGTGCAAAATTTAATCGCCGACATTGCTTGCGAATTGGATGAAGAGGATATAACCACATCGACAAAAAAAACTGTGGCACCTTCGCCTGGCAAACCAAAAGTACTGAACAAATCTTCGATGCGTATATTGAACAAAGGCGGCAGTGCAACGGTGGAGCCACGTCTGGCCACGCCGCAGATCAAGCACTACGAGGACGGCAATGTGGCGCTTGTAACGGAAATCCTCGATCCTAATGCATTAGATGCTTCCGCAGATCCCATCAAGAATGCTGCACCCGTGGCCACGAACGTCTTTCCCTGTCCGCACTGCGATCGCTCGTTCCCGCTGATGCAGTTGCTCGATATACATGTAGTGAATCACACAAGGGAACGCAGCTTCCAGTGCAACGAGTGCGACAAGAGCTTCTTCTCCAAGTACGATCTGCAGAAGCATAACTTCGTTCACACTGGCGAGCGGCCTTATAAGTGCACCATCTGCAGCTCAGCCTTTACCCGACGTGCGCTATTGCATCGCCACGAACGCATCCACACAGATGTGCCCAAGTTCATTTGCCTGTACTGCGAGAAGCCTTTCATATCGCGCGATGAGATGGAGAAGCACGCCGAACGTCACACTAAGAAGCGACCTTTCGCGTGTGGCATCTGTCAGAAGTCATTCGCCTTCAAGCAGGGTCTGGAGCGGCATGAGGTTATACACAGGACAAATTTGCCCTTCTCCTGCCAGTACTGCACTCGCAGCTTTGTCACGGCCGGCAAGTTGGCGCGTCATCTTCAGGCACATGCCGGCAAGCGTGCCTATCCTTGCAAATACTGCTCCAAGTCATATCTGTTGTCGCATCATTTGTCGCGCCACTTGCGCATGCACAAACAGGCCCCGGCTGCCTCCTTTACGTGCAGCATGTGCAAGGACACACATCGGACGTACGAGAGCCTGGTGGATCACTCGGCTATACATGCGAGCATCTCGCAGGTGTGTCCACTGTGCAAGGCCAGCATTGAGGACTTTGACAGCGTGGAACGCCATATGCAGGCCCACAAGGAGAGCGAGCGACACGCGTGCGAGTTTTGTGATTACATCTTCCTTAGCTCCAGTCAGCTGCAGAAGCACATCGAAGACGACCATGTGGTGGACATGGTACCTTATCAGAATGAGGGTGATTATGCTGGTGACAACAGTCTGCCCGAGGAGGGCGATTTGCTTGAGGAACTGCTGGGCGATGAGGATTCGCAGTCACAGTCACTGACGCAATCGAATGAGTCGACTTCGCCACCCAAAGCAAAGATACGTAAACTGAATTCGGCCACCAAGCCGGAGCGTAAATCAATTAAGCAGGAAGCGCTCTCTCCGGAGCACATTAAAAAGGAGAGCAGCACGATGCGTGGCAGGAGCTCGGCGGTGTCCGCTTCACCCGAAGACAGACGCCAAACACGCAGCAGGGAAAGCAAGGATAGATCACTGAAAAGTGATTCTGGCAAAAAACAGGCCAGGAAGTCGACGGAAGCAGATCCACCAAAGCAGCAGGAAAACAGGCAGCGTAACGGCCGCGTGGCGAAGAAGTGA
Protein Sequence: MPSYICLDCRLLFEHCYRFKQMCKHAETLLRQFPLTGKWPEPLEKPRAPVVPGHMGRKETSEKQPKKLLNSMAKSPNVLIDNVQVMETSSLPKKLLNVAAGSNAEPPIPARGSPAKRPSSQSYQVKVENNQELSMDDVQNLIADIACELDEEDITTSTKKTVAPSPGKPKVLNKSSMRILNKGGSATVEPRLATPQIKHYEDGNVALVTEILDPNALDASADPIKNAAPVATNVFPCPHCDRSFPLMQLLDIHVVNHTRERSFQCNECDKSFFSKYDLQKHNFVHTGERPYKCTICSSAFTRRALLHRHERIHTDVPKFICLYCEKPFISRDEMEKHAERHTKKRPFACGICQKSFAFKQGLERHEVIHRTNLPFSCQYCTRSFVTAGKLARHLQAHAGKRAYPCKYCSKSYLLSHHLSRHLRMHKQAPAASFTCSMCKDTHRTYESLVDHSAIHASISQVCPLCKASIEDFDSVERHMQAHKESERHACEFCDYIFLSSSQLQKHIEDDHVVDMVPYQNEGDYAGDNSLPEEGDLLEELLGDEDSQSQSLTQSNESTSPPKAKIRKLNSATKPERKSIKQEALSPEHIKKESSTMRGRSSAVSASPEDRRQTRSRESKDRSLKSDSGKKQARKSTEADPPKQQENRQRNGRVAKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01560036;
90% Identity: iTF_01551943;
80% Identity: -