Znig002556.1
Basic Information
- Insect
- Zaprionus nigranus
- Gene Symbol
- -
- Assembly
- GCA_018903425.1
- Location
- JAEIGD010000008.1:641962-648266[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.031 2.8 8.8 0.2 1 23 817 840 817 840 0.94 2 13 5 4.5e+02 1.9 0.2 1 23 1002 1024 1002 1024 0.91 3 13 0.00011 0.01 16.5 2.7 2 23 1027 1048 1027 1048 0.97 4 13 4.3e-05 0.0039 17.8 0.2 3 23 1056 1076 1054 1076 0.98 5 13 3.5e-07 3.2e-05 24.4 4.1 2 23 1083 1104 1082 1104 0.97 6 13 3.2 2.9e+02 2.5 0.4 5 23 1117 1135 1114 1135 0.95 7 13 0.83 76 4.3 5.4 3 23 1142 1163 1140 1163 0.93 8 13 0.089 8.1 7.4 0.2 2 23 1174 1194 1173 1194 0.96 9 13 3.4e-05 0.0031 18.1 0.4 1 19 1200 1218 1200 1222 0.95 10 13 9.7e-06 0.00088 19.8 0.5 1 23 1230 1252 1230 1252 0.98 11 13 6.4e-05 0.0058 17.3 7.6 1 23 1258 1280 1258 1281 0.96 12 13 0.00012 0.011 16.4 5.9 1 23 1286 1308 1286 1308 0.98 13 13 0.018 1.6 9.6 8.2 1 23 1314 1336 1314 1337 0.95
Sequence Information
- Coding Sequence
- ATGGTTGAGAGCATGCAGTGCCCCGTGTGCACCCTGTACCTGCATGCGGGTATGAATCTCTCCGATCATTTGGAGACACATCCCAAGGAGCAGGTGATCAAGGCTTTGGTGCAGATGACTATTGTTGGCAACAATGTGGCAGGCAGTTCCTTGGCTACAGCTGTGCTCTCCACTGCCGCCGGTTGTGGCACAACCGATGGCAGTGGCAGCGGTGGCAGCACATCCTCCACTTCCTCATCGGCGTTGTCCTTGTCGCTGTTGTCGACTGCAGTTGATCAGCCTGGACACTTTGCTGCCCAACAACAACAACAACAGTCGCCAAATAAGTACGCATATGCAGCGCATGCAACGCTGCCTCCTCCGCCACCGCCTCCACTCTTCTTTGCGCAACAGTCGACGACAGCGTTGTCGCATCAGAAGCCCCCACCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAGCACAACCAAAACAAGCAACAGCAACAACAGCAACAGCAGCAACAGCAACATTTAGCTGTACAACATAACGTTAACCTTGCACCACCCAGCGGGAAACATAGCAAAATCCACACGGATATCTTTCTAAATCCACCGCCACCACCACCGCCACAGTCCACATTGCCGACGTCGTCTGGACGCAATATCAGCAGCCGCCAATCGACAAATTCGCCATTTGGTGCACTGTTAAATGCTGCCGCACAAGCTGCCTACGTTCCACCTGCCGCAGGGGCACCATCTGTGTTGCGTTATGCCGAATCACCTGTGGCCCACTACTTGGAGCGCGATAATGGCGACTTTATTGTGCAAGAGACGCCCAAGCATATTGTGGAATGCGTTGAAAAGGAGGATGGTGAATTCTCAGTCATTGAACGCATCTATCAATCGCCGCCCAGCGTGTTGCACATTCACGACGATGACGAAACGACGACGACGATGACGAAGATGAGCAGGAGACGGAGGAGAAGCTGGACGCATAGCGAGGATGAGGATCAGTCCAAGGTGTCACATGGCCATGTGGAAGATGGCGATGATGAGCGAGAGGACAGCCGCAGTAGAGTTGGCGTAAAGCAGACAACGAAAAGAACATCGCGCAAAACTAAATCCGGTGGATGGATAAGCAAACGCACTTCCAAGCATCATCAGCATCAGCCAGTGGAGGATGAGGATGACTTCATGAGCGTCGGTAGCAGTTGTGCCGATAGTGACCATCAGTCCGAGCAGCAGCATCAACACCATCAACAGCCACAGAATGCCTCAAGTGCTGTACTGGCATCGTCATCATCCTCATCATCTGCACAGCATCTTTCCACGGCACCCTCAACCTCAGCTGCAGCTGCTGCCGCTGCCAACAACAGTGGTGCCTCATCTGCAACGGGTAGTTCCAGCGGGGCCACCAAGTCGAAGAAGAATCGCGTGACGGTGCTGAGTGATGTGCCGCTGAATATGAATGAGTATTTGGATCTGGTTGGCAACATTGTGGCATCAAGTCGCATTGGTGCGGCACGTCCCTTTGCTGCCGTAGCACCAATACCGCTGCTTAAGCAGCAGACCCAATCGGGCACCACGTTTGTTGTGAATGCGGCTAGTTTTGCCTCGGCCGGATCCGTCTTTGCTGTCAATGCCAGCAGCAATGCCGTTGGCAGTCCGAGCGCAAAGAAGGCAAACAATAGGCAGGGCGAAGAATATATATTGCCCGATGATAACAATCTGGAAGTGGATGAAATTGTGATATCCTCCTCTAATTTTATTGCCGCCTTGGCTGCTGTGGATTGCTGCAGCGTGGCGGCAGTTGATAGTGATGCTAGCGATGCCAAATATTTGGATTTGGATGCGTGCAAGCGGGAACAGTTGAGCAACAGCAGCAGCCACTTGCCATCGGTCTCGGCATCTACATCGACGACGTCTTCTTCATTTGCTGCTGCTGCAACGGAAAGCAGTTTAGTGGGTGGTTTAGGTCTCAACATACGCACAGATGAGAAGATGCCAGCCAAGGGGGAAATATCAGAGCAGGAGAGCAATTGTGACATTGAGAACTCCTGGAGTCAATCGGTAGGTATGTACGGCGACATATCACAGCGTTACTTTAGAAATCAGTTCTCAGATGGATACAATCAACAGCTGGCCGATTGGCGTCAGGATTACTATCCGGCGCAAGATCTCAGTGGCCAGCAATCGCAGCAGGAGCAGCGTGAGCACAAACGCACTTTTGATTTTAATGCCGTCGCTTCGGACTATGCACATGCACAACCGGGTGATCTAGATGCCTCCTCGAGCTCGGCGAGAAGCAACAATCATTTGTTGGATGCTCAACCCACCACCTCATCATCGTCATCGGCATTGCTGGCTGGTCCACCAATTGCCTCGACTTCACGCGCCGCAGCCGAAGCAGAAGCAGCTGTTGCAGCTGCGCTGGCACAACGCAAGCCACCGCGTCGCAAGATTTACAAGTGCCCGCATTGTGTGGCCATCTTTGAGAAGCTGAAGGAGCGCAATGCTCACATGATTGGCGAGCACAATTATGTGCGGCAGAATCGTCGTTTGATCTGTACACAGCCACTGGTTAGTGGCGCAATAATGTCGCAGCCACAGGATGCGCAACAGCAGCAGGCGCAGCAGCTATCCCTGCAACCGGAGTCAAGCGATGTTGCTCCTCTACAAGAGGACTCCAAGGATGGCATAGTGAAGATCAAGCAGGAACATTGTCAAGATAAACAAGACACGTCAGGGCAGATGCTTGATCAAATGGAGCTACCCGATGTGAAGGATGCCGATTTACTTGATGTAAACGGTTCAAATGGACGCGATGCCGATATGAAACCACCGACAAGCACCACTGAAATAGATCAGAAGCCAACAATGGCACCATTGGCAATTACCACACCTGCTGCCAAGTTGGCGGCACTTTATCGCATGCTTATTTCCTACAATGAATCGAAACTGGGGCAGGAGCGTAACAATCTCAGCGAACTGGAGCAGAAGGCCATGGAAAAGTCCATATTTCTTTGCTATGTTTGTCGTACGGATTTCCCTTCGGTTAAACTCTACGATGCCCATTTAACGGAACATCCCGCCGAGTGTTTTACGTGCGGCAAGAAATTCTATCGCTGGAAGAACTTCTCATTGCATCTGAAGCGTCATCTCGGCTGGAAGGAGTTTGGCTGCTATGTCTGTGACAAGAAGTTCGTGGTGCGCAGCGCTCTGGTCGAGCACATGCGTATGCATACGGGGCAGAGTCCACTCAAGTGCAAGATATGTGGCAAGAAATTCAAGCGTTACTCCAATTTGACGCAACATCGCAAGCGACACACCAAAATGATGGTGCGCAAAAAGGAATATGTTTGCCACTGCGGCGAAGTGCTGCCGTCAAAGGCACGTTTTCTGTGGCACAAGGAGACGCATGATCTGAAGCCCAAATGCTGTCCCTATTGCTGCGATCGTTTCGTGCACGCCAATTCGCTACGTCGCCATATACGACTGGCGCACTCGGATAAGTTCGACTATGCCGAGCCAATGGAGTGTCCCATGTGCAAGCAGATATTCGCCAAGACCTCGATAAAGGCGCACATGGCAACGCATTCGACAGATCCGCAATACGATTGCGCTATCTGCAACAAAAGTTTCTCCACCAAATGGAATCTCAAAATACATTCGTGGGTGCATGCGAATCGCACAGCCAAACCATTTAAGTGCGAGTACTGCCCCAAGGCATTTGTGCGTGAACTGGACTTTAAGAACCATATGAATGCACACAAGCAGATCAAACCGTACACCTGTGAGTATTGTGGCTGCAAGTTCATACGCAAGTACAACTATATGCGGCATCGGCGGGAGCATCATGGCAACAAGAAGTTCACCTGCGATCAGTGCGACAAATCCTTCCATCGGCATTACTATTTGATCGAACATCGGCGCATTCACACCGGGGAACGGCCCTTCCATTGCACGATTTGTGGCAAGAGCTCCACCACGAAAACCAATCACAACAAGCATCTGAAGATTCATCATTCGCGTGATCCCTTCACAGTGGAGGTCTAA
- Protein Sequence
- MVESMQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGNNVAGSSLATAVLSTAAGCGTTDGSGSGGSTSSTSSSALSLSLLSTAVDQPGHFAAQQQQQQSPNKYAYAAHATLPPPPPPPLFFAQQSTTALSHQKPPPAYGAAISQIRSQHNQNKQQQQQQQQQQQHLAVQHNVNLAPPSGKHSKIHTDIFLNPPPPPPPQSTLPTSSGRNISSRQSTNSPFGALLNAAAQAAYVPPAAGAPSVLRYAESPVAHYLERDNGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDETTTTMTKMSRRRRRSWTHSEDEDQSKVSHGHVEDGDDEREDSRSRVGVKQTTKRTSRKTKSGGWISKRTSKHHQHQPVEDEDDFMSVGSSCADSDHQSEQQHQHHQQPQNASSAVLASSSSSSSAQHLSTAPSTSAAAAAAANNSGASSATGSSSGATKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGAARPFAAVAPIPLLKQQTQSGTTFVVNAASFASAGSVFAVNASSNAVGSPSAKKANNRQGEEYILPDDNNLEVDEIVISSSNFIAALAAVDCCSVAAVDSDASDAKYLDLDACKREQLSNSSSHLPSVSASTSTTSSSFAAAATESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSVGMYGDISQRYFRNQFSDGYNQQLADWRQDYYPAQDLSGQQSQQEQREHKRTFDFNAVASDYAHAQPGDLDASSSSARSNNHLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAAVAAALAQRKPPRRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICTQPLVSGAIMSQPQDAQQQQAQQLSLQPESSDVAPLQEDSKDGIVKIKQEHCQDKQDTSGQMLDQMELPDVKDADLLDVNGSNGRDADMKPPTSTTEIDQKPTMAPLAITTPAAKLAALYRMLISYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQSPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01558467;
- 90% Identity
- -
- 80% Identity
- -