Zlin011060.1
Basic Information
- Insect
- Zaprionus lineosus
- Gene Symbol
- -
- Assembly
- GCA_035044505.1
- Location
- JAWNNX010000534.1:537764-542783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00095 0.081 13.6 0.5 1 23 144 166 144 166 0.98 2 13 0.00013 0.011 16.3 1.3 1 23 390 412 390 412 0.98 3 13 1 85 4.1 0.7 1 23 468 491 468 491 0.91 4 13 0.0011 0.096 13.4 1.9 3 23 759 779 758 779 0.92 5 13 0.021 1.8 9.4 1.9 1 23 785 808 785 808 0.98 6 13 7.9 6.7e+02 1.3 1.4 2 23 845 866 844 867 0.87 7 13 0.0059 0.5 11.1 0.5 1 23 888 911 888 911 0.97 8 13 0.082 7 7.5 0.2 1 19 1185 1203 1185 1203 0.94 9 13 0.00031 0.026 15.1 4.3 1 23 1221 1243 1221 1243 0.98 10 13 0.02 1.7 9.5 1.7 2 23 1249 1271 1248 1271 0.96 11 13 0.00088 0.075 13.7 4.4 2 23 1278 1302 1277 1302 0.90 12 13 0.35 30 5.5 1.6 1 23 1307 1329 1307 1329 0.95 13 13 0.016 1.4 9.7 0.8 1 23 1335 1358 1335 1358 0.96
Sequence Information
- Coding Sequence
- ATGGCGCGCAAGCGAGTAAAAATGGaagacataaatattaattataagtttGCGTGTCGTTGTTGTCTAAAATCTGAAGCGGAATTCTTCAAGCTGGACTCGCTAGCCGAAGATGTCATCGGCGACATTAACCAAACGCAAACAAAGTTGCCCCTTATTCGTTTACTATTGTTTTGCATGCGAACTGAAAATCTTCCAGAACTGCCGCAATACATTTGCGTGGATTGCAGTAAGAGTTTGCAAATTGCCTATTTGTTCATTAAGAATGGCTTACGGGCACACGAAATATTGCTCCGTAAGCTATGTCCTGGTAAAGTAAACTCAACAAGACGTTTAAATGGTCAACGGGCACAAAGCTATGAgCCGCTTACCCGACCCGATGGTACATTCAATAGGCAACAAACAAAGCCTTACAGTACTGCTTCCCGCCACGAATGCAAAGTATGTGgtgctattatttataatcgaaTGGAGCTTAAGCAGCACATACGAATGCACACagagTCATCGAGGCATAGGTGTAAACTCTGCAGTTTTGTAACActtaaacaacaattattacCTGAGCATTACCGCAAGGCCCATGGATTAACGGCCACACAAATTGAGCAGCAGCTTAAGATTCGAAGTGTTATGCAGGCAAATGCGATTGGAAAAAATATGACTACTGCAACCGAATCTGTGGATGACAATCAAGTAAAAGTGTGCACATTAGAGGATATGGAGTTGCTAATACCCACAGTACTTACACCTGAAGACTTTTCACATCCCCAATTGGATGTAGATCAATTGCGTGATATTGAACAGCAATTGGTTGAATCGGTGTCAGTCGACCGGTCCGGCATCAGTCTGTTTTCTTCCACAAATCCCTATAATCCAACGATGACAGctggcaacagtaacaacacaAGCATAGGTGCTGAATTTTTGGTTATGCCCGATGGATCTTTGCAACAAGTTAATGATGCTGGAGTTGTTTTTGAGTACATTGATGATAGTAAAACTACAAGTACGACGCCCAATTTAACTCTTCAAAAACTTTTTAGTGATTCAAAAACAGATTTGACGTCTACTGCTGACACAAGCAGATTTGTCGAGGACACGTTGCCACAAATAAAAGTAAGACCCAAATCAAGGCCGGCACCGGCATCAATTGGCGCACTCAAACACAAATGTAAGCTGTGTCCTAAAGCCTTTCCTACGGTAGCCCGCCTTAAGTCTCATCAGCTAACACACAGTCATCTGCCTAAATTCTTTTGTGATCAGTGTGCCTACTACTCGTTGCGCAGCACAGATCTCATTCAGCACTACACATCGGAGCACAAATCATTTATTGGCGGTGGTAAACATAGTTTGGTGGAGAAAACGGCGTTGGCACATATGCCAAACAAGGGTCCCACATATTCTTGTGATATGTGTTTATTTGAAACACAAAGTAGTGGTCAACTACGTGTACATTATACTGACAAGCATCTAATAAATCCTACCGAAGTGCAATTGCGTCCCAGTTGGTCCCATGAATCAACAGGAAACGCTTATAGCTCAACACATTCTACCGGCAGTGGCTTAAATCaactaaaaaatcaaaatacaatACCAGATATTCCTTTGGGTATTAAATATCCCACGGTGAAATCTGAAACAATGCAATCAAACGAGATTTCCAGCGCATTACAAATTCAACAACCACCACAAGCCGTTACCACAGCTGTGGTGACACAAACTGGTGAGATCAATGTTGTCGTGGACGCTTCGTCCTTATTCTATGCAGCGGGAACAGAGCAAATTTCTCAGACAGTAGAACCGAGTACTACAGGCATGAATGCCAAcacattttcaatgttttcgGAACAATCTTTGGCTAATAgcataccaacaacaacagttaccgAAGAGGCAAATGGAATATTATCTAACTCTGGTACAGAAAATGTTAACACAAGCATCTTTGGTGATATGCAGGAATTTATTGATAATACAGATGTTGCTGCTATATGTACCATACCCGCCGACGATATGCCCGTAGTTGATGGCGATGATATCgtaatagataataataacattagCCTGGATTTTGATACTGAGAACTTATTTGAAGACTTTGAAGATGATGTAGAGGTGGGCGATGTGGAtgacgaagatgatgatgctgaaaATGACGATGAGAACGACAATAATGATGCAGCGGCCGATCAAAATTTGTTACTTACTAGTGATGATGACGATCTGGACGACTTTGACGATGAACAGTCAAAACATTTACAGAAACCATATTGCATATATTGTAACAAAAAGTTTACTAGCCAGTATAAATTTGAGAATCATATGTTCGTACATCGCGGACTTGCTCCATATCGATGTGAACTGTGCACAAATCTCTACAACAAAAAACGTCTGTTAATAAGGCATTACAAAACAGTGCACAAGCGAATGCCCACTCGAGACATGGTACAGGCCAAGGGCGAAAAAATATCGGTTCCGCGTACAGCTATTGAAAAAATAGATGTTGTAGTTGAGAAATCTCCTATGTTAATGTGTGCTAAGTGTCCTTTTGAATGCGACGAAGAAAACGAGATTCGTAAGCATCTAAATGCTCATCATGGCATTAATGATGGTGTATCTGTACATGCCAACGAAGTATTCATAATTCGCAAACTTCCTTTTGAATGTCCACGATGTATTCGTTCCTTTGCTGCAAAACGAACACTGATCCGACATCTTCAACGTAGTCACTTAGTGGACACAATTATTGAGATGCAGACTTCACAAGTGACTAATAGTGATGTGGATTCTACAGTTGCAATGACAGTTTCAAACCCATTGTCGACGATTGAGAGCGATAGTTTTAGCAATGACACAGTATCGCAGAACGAGCTCAACACGCTGAAGTCCGAGCAGCATGCCGCTGACCTTACCTATGGAGGAGTTGATGTCATTGGCGATGAAAAATGCGAAAATATCGGGGCAGAAAGAGCGATAGACCAGGATCAAAATACCAAATTGGATACAGAGGATAAAGATTTAAAGTCTATAGTAACATCAGAAACGGATACAGCTACGAGTATAACTTCCACGGTATACACAGATGTTCAGAAAAGGACAGAAATCGGATCACCTACAAGTAATACTACAACAGATACAACGGCAACACTTATCTCGgaaacagcaactacaacagaaGTTGTAGATCTTCAAACAACAGATACAATAATTGAACCTTCATCGACAGCATCAATAGCAGAAATctcagaaacaacaacaacaacgacaacagacGCTGCAGATCTTCAAACAACAGACACAATAATTGAACGTACACCGATTGCTACAATAACAGAAACCGCGCTCTTTCCAACGACAACGCcatttgactttgattttgattttattgacaATGAAGGACATACTACACCCATTAAAGATAATAGCGACAGTCTTAACGTTTCTCCCAGTCCAACACATCTGTTAAATGGCACCGATAAACTATTAAGCGCAGCTGTGGAGCCATCGCCATCTAAAGACATTCGTGCACAACTGCCGCGAACGCCAATCTTTGTTTGCAAACAATGTAATCAGACATTTGATGAGCTGGCAAAGCTTGTACAGCATGACGCAGATCATAATTCCTGCACCTCAACATCACCACGTAACAATTATCAGCACCAATGTAAAATCTGCAATACAACATATCGGACAATTACTCTGTTGAACTATCATATGAAGCGACATGCATCTCAAAAAATTGAGTGTAAACAATGCACGATGCACTTTTTTCTTGATTCAGATTTGAGAAAGCACATACAGTCGGAGCATCGAATCAGCTTACCTCTCAAATGCGGTTTAGACGGTTGTAAGAAgacttttaattacaaacatCACCTGAAGCGTCATCAAACGGCCTCCCATTTGCCTGTTCAGTATATTTGTCCGATGTGCGGCTGTGATATGTTAACCAGTCTTCATCTAAGGAATCATATGGCAACACATAGGGGGATGCACACTTACAAGTGTCCCAAATGTGTTCGCACGTATATGCGCCGAAATCcTTTTCGAGTACATGCGTTACGTGAACACAAATGGGAAGTCACTGAggaggaaataaaaaagatttattccaaaaatgaaaatgcaaacacCAAAAATCTGCGCGACAGGAAATCGTTGAATAATAGTGTTGCTCTCGATTAA
- Protein Sequence
- MARKRVKMEDININYKFACRCCLKSEAEFFKLDSLAEDVIGDINQTQTKLPLIRLLLFCMRTENLPELPQYICVDCSKSLQIAYLFIKNGLRAHEILLRKLCPGKVNSTRRLNGQRAQSYEPLTRPDGTFNRQQTKPYSTASRHECKVCGAIIYNRMELKQHIRMHTESSRHRCKLCSFVTLKQQLLPEHYRKAHGLTATQIEQQLKIRSVMQANAIGKNMTTATESVDDNQVKVCTLEDMELLIPTVLTPEDFSHPQLDVDQLRDIEQQLVESVSVDRSGISLFSSTNPYNPTMTAGNSNNTSIGAEFLVMPDGSLQQVNDAGVVFEYIDDSKTTSTTPNLTLQKLFSDSKTDLTSTADTSRFVEDTLPQIKVRPKSRPAPASIGALKHKCKLCPKAFPTVARLKSHQLTHSHLPKFFCDQCAYYSLRSTDLIQHYTSEHKSFIGGGKHSLVEKTALAHMPNKGPTYSCDMCLFETQSSGQLRVHYTDKHLINPTEVQLRPSWSHESTGNAYSSTHSTGSGLNQLKNQNTIPDIPLGIKYPTVKSETMQSNEISSALQIQQPPQAVTTAVVTQTGEINVVVDASSLFYAAGTEQISQTVEPSTTGMNANTFSMFSEQSLANSIPTTTVTEEANGILSNSGTENVNTSIFGDMQEFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNISLDFDTENLFEDFEDDVEVGDVDDEDDDAENDDENDNNDAAADQNLLLTSDDDDLDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNKKRLLIRHYKTVHKRMPTRDMVQAKGEKISVPRTAIEKIDVVVEKSPMLMCAKCPFECDEENEIRKHLNAHHGINDGVSVHANEVFIIRKLPFECPRCIRSFAAKRTLIRHLQRSHLVDTIIEMQTSQVTNSDVDSTVAMTVSNPLSTIESDSFSNDTVSQNELNTLKSEQHAADLTYGGVDVIGDEKCENIGAERAIDQDQNTKLDTEDKDLKSIVTSETDTATSITSTVYTDVQKRTEIGSPTSNTTTDTTATLISETATTTEVVDLQTTDTIIEPSSTASIAEISETTTTTTTDAADLQTTDTIIERTPIATITETALFPTTTPFDFDFDFIDNEGHTTPIKDNSDSLNVSPSPTHLLNGTDKLLSAAVEPSPSKDIRAQLPRTPIFVCKQCNQTFDELAKLVQHDADHNSCTSTSPRNNYQHQCKICNTTYRTITLLNYHMKRHASQKIECKQCTMHFFLDSDLRKHIQSEHRISLPLKCGLDGCKKTFNYKHHLKRHQTASHLPVQYICPMCGCDMLTSLHLRNHMATHRGMHTYKCPKCVRTYMRRNPFRVHALREHKWEVTEEEIKKIYSKNENANTKNLRDRKSLNNSVALD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -