Zlin001231.1
Basic Information
- Insect
- Zaprionus lineosus
- Gene Symbol
- -
- Assembly
- GCA_035044505.1
- Location
- JAWNNX010000030.1:244267-247433[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 9.6 8.1e+02 1.0 0.0 5 11 170 176 168 179 0.87 2 9 0.072 6.1 7.7 0.1 1 17 339 355 339 359 0.77 3 9 0.0007 0.059 14.0 1.6 3 23 713 734 711 734 0.96 4 9 0.002 0.17 12.6 3.0 1 23 768 790 768 790 0.97 5 9 1.5e-05 0.0012 19.3 2.8 1 23 796 818 796 818 0.96 6 9 3.5e-05 0.0029 18.1 0.9 1 23 824 846 824 846 0.98 7 9 0.0021 0.17 12.5 1.8 1 23 852 874 852 874 0.97 8 9 0.0096 0.82 10.4 0.0 2 23 881 902 880 902 0.96 9 9 0.00066 0.056 14.1 0.7 1 21 908 928 908 929 0.95
Sequence Information
- Coding Sequence
- ATGACGCCAACTGACGAACTGCGACAAAAATGCGGCACCGTCTACACCTGGAATTGTGCTGGCGAACTCTATGGCATCGAGTGTGAACTCTGCGAGGAGAGGCCGCTCTGTGCCCTCGGCGAGTTTGCAGAACATATGGAACTTTGGCATTCCGATTGGCAGCAGGCCCCCGAGGACGAGCTTATGCTAGAGGTTCTTGCCGAACAATCAAGCGGCGGCGAGGTTAATGAACTCAAGCATCAAGTCGTTCAAGAGCTCAACTCGCTTGAcattcagcaacaacaacttgttgTTGAGACACCTCGGACCAATGATCAGCTGACAACTGACACAGAgAGTGCAGTGCCACCTATGGGGGAGAACCAGAAACTGACGACTGAACACGTGCAGGAGTTGATCGGTTTTTATAGAAGTGAGGCGCGACTGTGGGATCAATCGCATCCCGAGTTTCGCAACTTTGAGTTGGGTCGTGAGTCATGGCGTCGCATCACGGACGCATGGAACGCGCATTGTGGACGCAGCTTCACCGTGACGGATGTGCGCATACGTATATCGACGCTCTGCCAGCGATTCCTGAAGCAACGCGAACGGCTGGAGGTTAACGGGGAGATAGATGAGAGCATCAAGTTTGTGCACTACGACCAATTGAAGTTTCTGTGCGAGCAGCAGGCACTGCTGAAGCGGCAGGAGCTGCTCGCCTGCGAGAACCGCAAGATACTGGAGATCTACGAGCACTACCCGATTCTCTGGCACAATGCCCACAAGCGTCTGCGGTGCGTGGAGACAATGCGCAAGCGCAACGAGGCAAATCGTGGCCTGCAGATGGCGCTGAACATGTGCGGCATCAAGCTATCCGGCCTGGCAATGCAGCGTCGACTGCAGTCGCTACGAAAACGCTATCGGCTGGAGAAGATTAGGTACCTGCACAGCGTTGTGGAGGGCAAACAGGGTGACTTCGTTTCTGGATTCGAACACTACAGGGAGATGGAGTTCCTGCACAAACATATTGATCcttatgtgtgtgcggtgtgcggcAAGATATTCGAGAATCTGGTAAGTCATCAGACGCATGTCCAGGGTAGCTGCGAGGCCAGGGCGGTGACGACATCACAGGAGCCCAAAGCTACTGTGGGCGACATTATGGTGCAGCTCGAGGAGGATATTGTGGTGGACTCATCGCAGCTACCACAACAACCAGAATCAATCGAGCCGCCATCAATAGTGCAAGAGGAGCAGGAGCCAATTGTGGACTCAACCAGTGCTGAAGTGGACAAGCTAGTCGAACAGGTGCTACGGGAGATGCCGCCGCCAGGGGATCAGATATTACCACCAATGCCTGATCTGGACGAGGAGTGCATCGATGGACAGTTGAAGGAGAGAGAAGAGTTGTCCACATCAGGATTCTCACTATCCGAGGAGCATGCGGATCTCTCCTCCGAGGAGGACGCACCGTCCCAGTTCCAAAAGTTTCGGGTGCGACTCAATGTATCGCAGACCGAGGCCCTCATCAAGCTATACCAGACCCAGACCATACTCTGGGACCCCAACCATTTGGATAACAAGGAACGCAAGCTGCGCCGCCTGGCCTGGCAGAGCATCACCAAGCAGCTCAACGATTTCCTGGATGGCAAGCAAAAGTACAGTTGGCAAATGCTGCATCGCAAGCTGACGGACTATGCCAAGTACTATAGGCGTGAGCGGAAGAGGGAGGCGGTGGCCGAGGAGGGCGGAGGCGGCGGCACACGGTGGTGCTTCTATGATGCGTTTAGCTTTCTGGACGATGTGCTGCCCATCAGTTGTGTCATGCAAAagtcgctgctgcagcggGACAGCAATCTAAAGATCATCCAAGTCTACAAAAGCTACGAGCAGCTCTGGTGCACCAATCATCCGGACTACACCAAGCGTAAGCAGCGACAGCGTCAATTGGAGTCGCTTTGCACGCGCCTGCAGGAGGAGTGTAATCTTCAGATCACGGTGGAGCGCCTCAAGAACCGGTTAATCGAGTTTCGCTGCCAGTACAGGCAGTGCAAGGAGGCGCGTCTGGAGGCTACGAAGCGTGGCGAGCTCTGGAAGCCAAGCTATGAGTTCTACGAATCGCTGCAGTTCCTCGAGCTGCACGTCTCGCCCTTCGGCTGCCCGCACTGCGGCGACAACTTTAAACGCCGCTCCGACTATTTGCGCCATGAGCGCAACGTACACTTGGAGGAGCTGCGGGATCTGGAAGATGTGCAGCTCTTGGACCAGAATCATCCACGAAAACGACGCTCGCGCCGCGTTGGCGCTGTGAATTCCGTGGAGCACATTTGTCATATATGCGCCATGAAGTTCTCACTGCGCACCAGCCTCCTGGCCCATCTGCGTCGACATCTTGGCCAACGGACGCACGCCTGCAGCGAGTGCCCAAAGAAGTTCTTCAACTCCACATCGCTGCGTGTCCATCAACGCAGCCACACGAAGGAGCTGCCCTACGTCTGCGAGCACTGTGCCCGCGGCTTCGTCAATGCCAGCAAACTGAATCAGCACGTAAAGAGGCACCAGAACAAGCGCGACTTTCCCTGCAGCCGCTGCGACAAGGCCTTCTACACGGCCCACGAACGCGACCGGCACACACGCGCCCATCTGAACATCCGCGACAAGGTGTGTCCATATTGTGAGCGGGCCTTTGTTGTGGGCAGCGCCTACTATGCGCATCTTAATCTGCATCGCGGCGAGAAACGCTACAGCTGCTCGACGTGTGGCCAAAAGTTTGCCCAGTACGCGGGTCTCTACAAGCATCGCAAGCGCTGCGTAACCAAGGAACTGACGGAAAAGTAG
- Protein Sequence
- MTPTDELRQKCGTVYTWNCAGELYGIECELCEERPLCALGEFAEHMELWHSDWQQAPEDELMLEVLAEQSSGGEVNELKHQVVQELNSLDIQQQQLVVETPRTNDQLTTDTESAVPPMGENQKLTTEHVQELIGFYRSEARLWDQSHPEFRNFELGRESWRRITDAWNAHCGRSFTVTDVRIRISTLCQRFLKQRERLEVNGEIDESIKFVHYDQLKFLCEQQALLKRQELLACENRKILEIYEHYPILWHNAHKRLRCVETMRKRNEANRGLQMALNMCGIKLSGLAMQRRLQSLRKRYRLEKIRYLHSVVEGKQGDFVSGFEHYREMEFLHKHIDPYVCAVCGKIFENLVSHQTHVQGSCEARAVTTSQEPKATVGDIMVQLEEDIVVDSSQLPQQPESIEPPSIVQEEQEPIVDSTSAEVDKLVEQVLREMPPPGDQILPPMPDLDEECIDGQLKEREELSTSGFSLSEEHADLSSEEDAPSQFQKFRVRLNVSQTEALIKLYQTQTILWDPNHLDNKERKLRRLAWQSITKQLNDFLDGKQKYSWQMLHRKLTDYAKYYRRERKREAVAEEGGGGGTRWCFYDAFSFLDDVLPISCVMQKSLLQRDSNLKIIQVYKSYEQLWCTNHPDYTKRKQRQRQLESLCTRLQEECNLQITVERLKNRLIEFRCQYRQCKEARLEATKRGELWKPSYEFYESLQFLELHVSPFGCPHCGDNFKRRSDYLRHERNVHLEELRDLEDVQLLDQNHPRKRRSRRVGAVNSVEHICHICAMKFSLRTSLLAHLRRHLGQRTHACSECPKKFFNSTSLRVHQRSHTKELPYVCEHCARGFVNASKLNQHVKRHQNKRDFPCSRCDKAFYTAHERDRHTRAHLNIRDKVCPYCERAFVVGSAYYAHLNLHRGEKRYSCSTCGQKFAQYAGLYKHRKRCVTKELTEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -