Zlin014632.1
Basic Information
- Insect
- Zaprionus lineosus
- Gene Symbol
- RREB1
- Assembly
- GCA_035044505.1
- Location
- JAWNNX010000676.1:90424-96860[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.034 2.9 8.7 0.8 1 21 253 273 253 275 0.93 2 12 0.00032 0.027 15.1 0.2 1 23 285 307 285 307 0.98 3 12 7.6e-05 0.0065 17.0 7.3 1 23 313 335 313 335 0.98 4 12 0.69 59 4.6 2.1 2 20 603 621 603 623 0.93 5 12 1.2 1e+02 3.8 0.1 1 23 778 800 778 800 0.96 6 12 1.2e-05 0.00099 19.6 0.7 1 23 810 832 810 832 0.99 7 12 0.00078 0.067 13.9 2.0 1 23 838 861 838 861 0.97 8 12 0.0028 0.24 12.1 2.0 1 23 1139 1162 1139 1162 0.95 9 12 8.2e-05 0.0069 16.9 0.3 2 23 1521 1542 1520 1542 0.97 10 12 0.14 12 6.8 6.3 1 23 1548 1571 1548 1571 0.97 11 12 0.008 0.68 10.7 0.5 3 23 1812 1832 1810 1832 0.96 12 12 0.0018 0.16 12.7 4.2 1 23 1838 1860 1838 1860 0.98
Sequence Information
- Coding Sequence
- ATGCTGGCAGCACGTAAGcaacacacagcagcagcagctacaactgcTGGAGGCAGCACATCCACAGTGGGACATGTTCTCGATCATGAGGAGCTGAATCATCGCCAGCGTCGAGATTCAAGCACCTCAGAGTCCTCGCTTGAGCACTTGGACTTGGGCCGCACACCAAAGAAGctgagcagcagcggcggtgcGCCGCAGCCAACGTCGACGCCGCACGAGGCAACAGCACTGACAACGTCGTCGCGTAAGCGTAAgctgcgacagcaacaaccacagccacagacacagcagcagcagcagcagcagcactccgacgaggatgaggaggagctgcagcagtCACAGCAGCCGCTGTTGGAGCAGTCAGCGTTGCCAGCGGTGCAGCGGCCACGGCACAAGCAGcgacgcagcaacaacaatgccgcCAACGCTGCCAGCGCCAGCATCGTTGTCGACTACAGCGCCAGCGGCGACGCCAGTTCGCTGCGTAAAAAGTTCCGTTTGAAtcgcagcagcgccagcaccaACGGTGAGCTCTCCGAGTCCGGCTTCGTTGATGGCAGTGCCCACAGCGGCTACTtgctgagcagcagcagcagcagcgccgccCATTCCGCTCAGGCAGCTGGAGCAGCGGCGTCGTCAGCCGCGGCACAGCAAACATCAAGCAGCAGCTCCGGTGGCTCATCACCGCATGCCCTGTGCCTGTCCAGCGCCGAGTCCGGCATTGGCGCCGGCGATGATCATATGAAGTATCTGTGCCCCATCTGTGAGGTCGTCTCTGCCACGCCCCACGAGTTCACCAACCACATCCGTTGCCACAACTACGCCAACGGCGACACCGAGAACTTCACCTGCCGCATCTGCTCCAAGGTGCTCTCTTCGGCCTCGTCGCTGGACAGGCATGTCCTGGTGCATACGGGAGAGCGTCCCTTCAACTGTCGCTACTGCCACCTGACGTTCACCACCAACGGCAACATGCACCGCCACATGCGCACCCACAAGCAGCATCAGACGACGACGCAGTcgcagcaacagtcgcaacagcagcagcaacagtcacagcaaTCGCAGCGTGGGCGTCAATCGCATGGGGGCGTGGCCAATGCTGGTGGGGCTGGTGGTGCGGTGGGAGGAGCAGCgcaggcggcggcggcggccgCACGTGCGGAGAGCTATGAGAGCGACGCCAGCTGCTCGACCGATCTCTCCAGTGCCAATAgtcagagcagcagcaatcagtccaacgccaacaccaacaacaacaacaacaataacagcaccaacaacaacaacaacaacaataacaacaccaacaacaacaataacaacagccacaaaacgaacaacaacaataacaacgaatTGGAGGAGGAGTTGGATGTGAGGGCGGCGGGAAAGCAGCGACGCCTCAAGACGacgatcaacaacaacatcatcaacgaTGACCAGGACGAGGTCCATgggaatcagaatcagaatcgtGTTGCTCGCCCGAAGAtggaggaggatgaggaggaggaggaggaggacgagCAGGAGCAAATGAAGCAACAGCccgatgaggatgaggatgatgttgatgatgatgagggaGCACGGGATGGGGATAGTGTGGATGTCGCTCAGGTGATCACAAGCACACCCGATGTGGCCACACTGCTTGCCTCCGAGGGCACCTCCCCCTCGCACTCACCCGGACTGCCGATGCTCCTCAGCTGCCCCGCCTGCAATGAAGGTGAATTCGAGTCTCTGCCCGCGCTCTGCGTCCACTTGGATGCCGTCCACGCGGACATACCCGCCAAGTGCCGCCAGTGCGAGGTGATCTTCGCCAGTCACCGCCAGCTGCAGGCCCACAGTTGCCGTGAGGCAAATGGAATGCAGTTGTTGCCGCcattgccgccgctgctgggCAGCAGCTCGTCGCCTTTGCATAAGCAGGAGATTGAGgaggaagatgatgatgaggaggaggaggaggagcagcatcGCCAGCAACGCCACTTGGAGCAACAACATGCGACTGAGAGCGATCGCGATGATCTCTTCCAGCAATTGTATCTCAAGGGCAAGTCCTCGGCGTCACAGCTGCCATCGCCCATCAAGCACGAGCCGACGGATCGCCTGGACAACCGTCAGGATCTGGCCGACATACAGAGCATCCTGAACATGACCAGCTCCAGCTGCACCTCCAGTTTCCTGCGCAACTTCGAGCAGTCGGTGAACACCCCCTGCTCCAGCCAGTACAGTGTGGATGGACGCGATGGGGAGGAGGAGGCACAGGATGCCTTCACCAGCGAGTTCCGCAGGATGAAGCTGCGCGGCGAATTCCCCTGCAAGCTCTGCATCAGCGTGTTCCCCAACCTGCGCGCCTTGAAGGGTCACAATCGTGTACACTTGGCGGCCGTTGGTCCCGCCGGTCCCTTCCGCTGCAACATGTGCCCCTACGCGGTCTGCGACAAGGCAGCTCTGGTGCGGCACATGCGCACCCACAACGGGGATCGGCCCTACGAGTGCGCCGTTTGCAACTACGCGTTCACCACGAAGGCCAACTGCGAGCGGCATCTGAGGAATCGCCATGGCAAGATCAGTCGGGAGGAGGTGAAGCGTGCGATTGTCTATCATCCGGCTGAGGATGCGAGCTGCGAGGACAGCAAGTCCGGCTCCCGTCTGCCCGATCACGACCTGGCCGAGCTTAGCTACCGTTCAATTTCACCGCCGCCTCCACCACCGCCGGCCCAGCAGCCCGAAGCTGCCTCCCAGCTGAAGCACATGTTGCTATCGGAATCCACAGCGGCACCcgctgcagcttcagcttcaggagcagcagcaggagcaacagcagcagcagcagcagcagccaagacacagcagcagcccaTGAAGATCCAGGTGAAGAGCCTGGACCAGTTGGTGGACAAGCCGCAGGCACCGCCCACACCGGCCATGGATCTCAGCATGGATGTGCTTGATCTGAGCAAGAAGCCAACatcaggagcagcggcagctgcagcggcagcagcatccCTCGATctgcaggagcaacagcaacgggaTCAGCAGCGCGAGCGGGAACAGGACCTGCTCCTCCACCAAcaggcgcagcagcagcagcaactgttcgGGGCAGGAGATGCGGCGACTCAGTACATGCAGCAGCTGTTCCGGAACCTCATGTTCCAGCAATCTCCGGCATTCTCCTACTTCGGGTTCATGGCTCCGCCCGCCGTTGCCGAGAAGCCGCAGCAGCCATCGAccggagcagcagcggccccagcggcagcaacgctCCCAATGCCGCTGCCCGGCGTGGGTGTGCCCGTGCCTGCCGGCGGTCCCGTCAAGATGGTCATCAAGAATGGCGTCCTGATGCCCAAACAGAAGCAGCGTCGCTACCGCACCGAGCGACCCTTTGCCTGCGAGCACTGCTCCGCCAGATTCACCCTGCGCTCCAACATGGAGCGCCACgtgaagcagcagcatccaCAGTTCTATGCCCAGCGGCAGCGCAGCGGACATCATGTGATGCGCGGACGCGCTGCATCCTCCAGtgcggcagcagccgcagcggctgcagctgcagcagcggccgcgGCCGCCGCCATGAACAATCTgagccagcagcaacatggcCACCACGCCCATCATGCGCCCATCTCGGAGCAGGTGAAGTACGCGATACTCGCGCAGCAGCTAAAGGCGCGCAAGGATACGGACTTGCTGCAGCAGGCGCTGGCACATGGCTCCAGCAGTGTCGTGGCCAATCCTCTGCTGCACTTCGCCAACTACAagaaccacagcaacaatgccGCCGGCAGCAATGGTCACCATGCCAATCCCATTGCCCTGGATGATGATGAGCCACCCAAGTTGATCATCGACGAGGACGACGAGGATGAGTTTGATGATGTGGACGAGGAGGATGAGTTGGACGAGGATGAGCAGCAGACGGAAATGGAGCTCGATCTGGACCGAGAGCAGGATCAAGGCATGGACCATGAGGAGGAGGAACAAGATGAGAAGCAGGAACTGCCCAAGTCACCGGTGATGCGCTCCCCGCCCAGTGAAGTGGCCAAGAAGGTGGCCGAGACCATCCTGGAGCAGGCCATCAAGGCGTGCAAGCCCAGCAAAAAGGGTGCCGATCCAGCGCCTGAGCCAGCACCGGAGGTGGCCATCACCAAGACTCCATCGCCACCgggcaccaacagcaacgcaGTGACAACAGTTGCTCCCAGCACAATGAAGACAATGATTGCCCAGGCGGAGTCGGTGGCCAAGTCGCTGAAGGAGGTGGCCAGTTCACCGTTCAAGGACGAATCTCAGGATCTGGTGCCAGTTGCCAAGCTGGTGGACAATGCGACCAGCAATCAGGTCTCCTTCAATAGCTACTTTCGTCCCAGCGATGTGGCCAACCACATGGAGCAGAGCGACGAGGAGGGACTTGTCGCCTCCGGCAGTGCCAGCGAGAGCAACAATTCCGGCACCGAGGATgtgaccagcagcagcagcaacgagcCCAAAAAGAAATCCGCCTACAGCCTGGCACCCAATCGGGTCAGCTGTCCCTATTGCCAGCGCATGTTCCCCTGGAGCAGCTCCCTGCGTCGGCACATCCTGACGCACACGGGCCAGAAGCCCTTCAAGTGCTCCCACTGTCCACTGCTCTTCACCACCAAGAGCAACTGCGATCGCCATCTGCTGAGGAAGCACGGCAACGTGGAGTCCGCCATGTCCGTCTATGTGCCCACCGAGGATGTCAACGAACCGATTCCCGTGCCCAAGTCCGTCGAGGAGATCGAAATGGAGGAGCAGCGCCGTCGCAAGGCAGCCGAAGCCGAGCAGCTCGAACGCGAGCGTgaacgggagcgggagcgggagcgagAGCGTGAACAGGAGCGCGAGCTTGAGCGGGAACGGGagcgggagcagcagcagctcatccAGCAGCTGGCGGCCGCGGCACAACTCACCCAGCGAATGGCcgccgcagctgccgccgccgctgctgcagcaactgcaaacacagccaacaacaacaacaccggcggcagcagcagcagcaacaacaacaacaacagcagcagcggcggcagtggcagccccGCCGCCGCTCAGGTGGCTGCGGGCAGCCCCAGCACCAGCGAGGCGAATGGCAGCGATTTGCCCTTCAAGTGTCACCTGTGCGAGTTCTCCTTTGGGGAGCGGCTGCAGTGCCTCGAGCACATCAAGCAGACCCATGCGCACGAGTTCAGTCTGCTCCTGGCGAAGGGTGCCATCGAAATGGACACGCTGCtcgaccagcagcagcagcagcagcagcagcagcaactgttgccgcCCACAGCCGCCGGATCCGATGATGAGTCGATGGGCGGGGGTGCCGCGTCACGTGGTGGCAAGTATCCCGACTACAGCAATCGAAAGGTGATCTGCGCCTTCTGCGTGCGCCGCTTCTGGTCCACCGAGGATCTGCGCCGGCACATGCGCACCCATTCGGGGGAGCGTCCGTTCCAGTGCGAGATCTGCCTGCGCAAGTTCACCCTGAAGCACAGCATGTTGCGCCACATGAAGAACCACAGTGGACGCAGCCACAACGGGGATCACGGCCAATCCGATTGCTCCGACGATGAGCAGCTGGCGACGCCTCCAAGTACTCCCACTCCCACGTCCATGAttcaaaataccaacaacaacaacaacaacacttgccagaacaacaacaataataataataatagcaacaacaacaacaacaaacagaatcTGCGCCTGCCAAAGCTGCACGAGCTGCTGGACAAGACGAACGAGTGGCGCGTCAGCCGCCTGGGTGAGCACAAGGAGAACCTGGGCGAGGCGACACCATcggctgcagcagccgcagccgcagcggcgGTGGCCGGCAGCGATCTCATTGGCAATCTGTTGGGCATCAGCGACCAGGGAATCCTCAACAAGCTGCTCTCCTCCGCCGATGAGGCGGCCAAGCTGCTGGGCGTGGACAAGTGA
- Protein Sequence
- MLAARKQHTAAAATTAGGSTSTVGHVLDHEELNHRQRRDSSTSESSLEHLDLGRTPKKLSSSGGAPQPTSTPHEATALTTSSRKRKLRQQQPQPQTQQQQQQQHSDEDEEELQQSQQPLLEQSALPAVQRPRHKQRRSNNNAANAASASIVVDYSASGDASSLRKKFRLNRSSASTNGELSESGFVDGSAHSGYLLSSSSSSAAHSAQAAGAAASSAAAQQTSSSSSGGSSPHALCLSSAESGIGAGDDHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQTTTQSQQQSQQQQQQSQQSQRGRQSHGGVANAGGAGGAVGGAAQAAAAAARAESYESDASCSTDLSSANSQSSSNQSNANTNNNNNNNSTNNNNNNNNNTNNNNNNSHKTNNNNNNELEEELDVRAAGKQRRLKTTINNNIINDDQDEVHGNQNQNRVARPKMEEDEEEEEEDEQEQMKQQPDEDEDDVDDDEGARDGDSVDVAQVITSTPDVATLLASEGTSPSHSPGLPMLLSCPACNEGEFESLPALCVHLDAVHADIPAKCRQCEVIFASHRQLQAHSCREANGMQLLPPLPPLLGSSSSPLHKQEIEEEDDDEEEEEEQHRQQRHLEQQHATESDRDDLFQQLYLKGKSSASQLPSPIKHEPTDRLDNRQDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQYSVDGRDGEEEAQDAFTSEFRRMKLRGEFPCKLCISVFPNLRALKGHNRVHLAAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKISREEVKRAIVYHPAEDASCEDSKSGSRLPDHDLAELSYRSISPPPPPPPAQQPEAASQLKHMLLSESTAAPAAASASGAAAGATAAAAAAAKTQQQPMKIQVKSLDQLVDKPQAPPTPAMDLSMDVLDLSKKPTSGAAAAAAAAASLDLQEQQQRDQQREREQDLLLHQQAQQQQQLFGAGDAATQYMQQLFRNLMFQQSPAFSYFGFMAPPAVAEKPQQPSTGAAAAPAAATLPMPLPGVGVPVPAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRAASSSAAAAAAAAAAAAAAAAAMNNLSQQQHGHHAHHAPISEQVKYAILAQQLKARKDTDLLQQALAHGSSSVVANPLLHFANYKNHSNNAAGSNGHHANPIALDDDEPPKLIIDEDDEDEFDDVDEEDELDEDEQQTEMELDLDREQDQGMDHEEEEQDEKQELPKSPVMRSPPSEVAKKVAETILEQAIKACKPSKKGADPAPEPAPEVAITKTPSPPGTNSNAVTTVAPSTMKTMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSNEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVNEPIPVPKSVEEIEMEEQRRRKAAEAEQLEREREREREREREREQERELEREREREQQQLIQQLAAAAQLTQRMAAAAAAAAAAATANTANNNNTGGSSSSNNNNNSSSGGSGSPAAAQVAAGSPSTSEANGSDLPFKCHLCEFSFGERLQCLEHIKQTHAHEFSLLLAKGAIEMDTLLDQQQQQQQQQQLLPPTAAGSDDESMGGGAASRGGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKNHSGRSHNGDHGQSDCSDDEQLATPPSTPTPTSMIQNTNNNNNNTCQNNNNNNNNSNNNNNKQNLRLPKLHELLDKTNEWRVSRLGEHKENLGEATPSAAAAAAAAAVAGSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -