Zlin008246.1
Basic Information
- Insect
- Zaprionus lineosus
- Gene Symbol
- -
- Assembly
- GCA_035044505.1
- Location
- JAWNNX010000385.1:265688-271411[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.041 3.5 8.4 0.2 1 23 1235 1258 1235 1258 0.94 2 13 6.8 5.8e+02 1.5 0.2 1 23 1431 1453 1431 1453 0.91 3 13 0.00015 0.013 16.1 2.7 2 23 1456 1477 1456 1477 0.97 4 13 5.9e-05 0.005 17.4 0.2 3 23 1485 1505 1483 1505 0.98 5 13 4.9e-07 4.2e-05 23.9 4.1 2 23 1512 1533 1511 1533 0.97 6 13 4.6 3.9e+02 2.0 0.4 5 23 1546 1564 1544 1564 0.96 7 13 1.2 98 3.9 5.4 3 23 1571 1592 1569 1592 0.93 8 13 0.12 10 7.0 0.1 2 23 1603 1623 1602 1623 0.96 9 13 0.00012 0.011 16.4 0.3 1 19 1629 1647 1629 1651 0.95 10 13 6.3e-05 0.0053 17.3 0.6 1 23 1659 1681 1659 1681 0.98 11 13 8.8e-05 0.0075 16.8 7.6 1 23 1687 1709 1687 1710 0.96 12 13 0.00011 0.0093 16.5 5.8 1 23 1715 1737 1715 1737 0.99 13 13 0.0014 0.12 13.0 6.0 1 23 1743 1765 1743 1766 0.96
Sequence Information
- Coding Sequence
- atggTCGACTGTGTGCAGTGCCCCGTATGCACTTTGTACCTGCATGCGGGCATGAATCTCTCAGATCACTTGGAGACACATCCCAAGGAGCAGGTCATTAAGGCTCTAGTACAAATGACAATCGTGGGCAATAATGGCATTGGAAGTGCATTAGCGACAGCCGTACTTGCTGGCTCTGGTAGCTGTGCATCATCCGATGGCGCCAGCACTTTATCACAGGCAAGTGCTGATGTAAAACCAGCTGTGCCTGCAATTGCACCAACAGTAACAGCCactccaccaccaacaacatcatcaaagTCAACTGCACCCAAAGCTGCGTCATTGCACGGgaacgccagcagcaacagcaacagcaacaacaataataaccacaacaacaacaacaacaataacaaactgAGCAATCCACCGATAAAATCAGGTAAAAGTGCGTCACCCATGACTGAGGCGTCAGCCACTTCATCCAACACACCCACCACGAACAACGTGGCCGTTGTCTATCCGCCATCCGTGCCGACGGAATACCGGTATGATCatcagcaacaagcaacacagGGTACAACCACGCTACATGGCTTTTCACGTGGTAGCACTACGACGCTGGTTATACCACAAGGTcctcaacatcaacatcatttCCTAGCCACACAGCAGCACTTTGCCCATCAGCAACAGTCGGCCATGAAGTACACGTATACCACTGCGTTACCTCCGCCCCCGCCGCCGCCACTGCAAcTTTTTGCGCATCAGCCGACGACATCACAGTCACATCAAAAGCCACCACCCGCCTATGGCACCGCCATCAGTCAAATTCGATCTCAGCATAACCAAAACaagcaccaacagcaaaatCAACATGTATCCGTACAACATAACCTTAACCTAGCACCGCCGAGTGGCAAACATAGTAAAAACCACACGGATATATTCTTAAatccaccaccaccgcctcaGTCCACGATGGGGTCAACGTCGTCACCTTCTTCAAGACTGCAACACGTGCAACAGGCCCATCAATCTTCAACACTTCCGAGCAACTATGGAGCCCCAAACTATCCCACGACACCTACGGGTCAGATAACCTCAATGCCAACTGGACGTGTCAGCAGCCGCCAAGCTAACAGTTCACCATTTGGTGCGCTTCTTAATGCAGCAGCGCAAGTGGCATGTGCTTCACCTGCATCGTCAAGTGCATCTGTGCTGCGTTATGCAGAATCTCCAGTCGCCCACTACCTTGAACGTGAGAATGGAGACTTCATAGTGCAGGAGACTCCAAAGCACATTGTAGAGTGTGTAGAAAAAGAGGATGGTGAATTCTCTGTCATTGAGCGCATTTATCAGTCACCGCCCAGCGTTTTACACATAcacgacgacgatgaggacgatgatgaggaggatGAAGACCACAATTGGGTAAATAGCGACGATGATGATCAGGGAAAGACGCCCAGCGATCATGTGGAAGATGGTGACGATGAACGTGAAGACAGTCGGAGCCGGGCAGGTCCAAAAACTACAACGAAAAAGTCGCGCAAGACGAGACCAAACGGAAAGGTGCTCAAACGCGGTCCCAAACATCAAatggatgatgaggatgatttTATTAGTAGTGCGGAAAGTGATCATCAAGCACACCAGCTGCAAAATAATGGACCACAGGTATCAACAACACCTCCACCGCTTTGTATAGCGCCTTCGACAAGCATCGGAGCCGCTACTGCTTCATCGAATAATGCCAATTCCACCTCAACTGGAAACAAGTCCAAAAAGAATCGAGTCACGGTTCTTAGTGATGTTCCGCTCAATATGAATGAATATCTCGATTTGGTGGGTAACATTGTGGCATCAAGTCGCATTGGTGCTGCACGTCCCTTTGCCGCAGTTGCTCCCATACCATTGGTCAAAGTAGAAAAGGAAGAACCAATCGATGACTATGATACAGTCGAGACTTCCGCACGTTCTGGTGAAGAGGAAAAACCTAACCTAGAACATGCCCTtggcagtagcaacagcagtagTAGCAGCTGTAGTAATGGCCATGGCACCACCAGCGTAATACGCATGGccagcacaagcagcagcacaaaCGTTCCGGCCGAGGATCTAAACCAACCGCCACCAATGAAAGTTGAGGTGGAGCCAACTACAACGTTACTGCCACAGCGCTTCTCAACGCCAGCGCAACAGCGCGGACCTAAAAAATTAGTCATTAAACCAAAGGTCATGGCTGCCGCTACAAGCACGACCACCAGTAACTGCACCGAATCCCTCAGCATATCAAAACCACCCGTAGAGCTGGTTCACATAAAGAGCGAAAACGTAGAGCATTCAACATTAACTGGAAGTATTTTGGAGAAGCATCTCACCACCAGCTATGCCGCACAACAATCCCGCAAGCACTCCGCAGTGAACGACGATGATGCCCGAGTGCTGCTCGACTTTGCCAATTCGAAGCAGCAACCGTTGACCGGCACGAGCAACCAGACAACGTTTGTGGTGAATGCGGCTAGCTTTGCTTCGGCTGGATCCGTATTTGCTAGCTCCAGCAACGCCAAGAAGTCTGCTGAGCCAGGCGATGAGTACATTTTGCCTGACAACAATCTGGAAGTGGATGAAATTGTGATATCCTCCTCGTCTTCCTTTGCCTCCTCCTTGCAACAggcacaagaacaacaagaagcaacaCCGTCTACAGACGTAGCACACTTGCACAATCCGGATACGCCTGCTTTCAATGACTTTAACTTTTTGTACCATCAAACTAATCCATCGACCACAGCTGCTGCGTCAACTTCCACCTTTTCGCCTTTCGGCCttcagcaacagcaccaacaacagcttcAGCATCCACATAACGGGTCCAGCGAAGCCACAAATGCTGCAACACTCGCCTCGTCCTCCAGTAATTCGTCAATATTGGATCCGGAGTCCTCCATGAATGCCACGTTCCGAGTAGCCAAGCCGCAGTCGGTTCATGGGGCTTGGTATcacccacagcagcaacaacagcagccgcccCAGGCAACTGTCACTCAGGGTCAAAATGTGGAGCAGTCCAGTAATTTTATTGCAGCGTTAGCAGCTGTTGACTATTGCAGTGCAGCAGCGGACAGTGATGCCAGTGATGCAAagtatttggatttggataCATGTAAGCGAGAGCAGCTAAGCAATAGCAGCAGTCATCTGCCCTCGGCTTCGACGTCAACTACATCAtcatttgctgctgccgctacgGAAAGCAGCCTAGTTGGTGGCTTAGGTCTGCATATACGTACAGATGAAAAAATGCCCGCCAAGGGTGAAATTTCTGAGCAGGAAAGCAACTGTGACATTGAGAACTCATGGAGTCAGTCGATTTATGGGGACATATCACAACGTTACTTTAGAAACCAGTTTACAGATGGATACAATCAGCAATTGGCCGATTGGCGCAACGATTTTTACCCAGCGCAGGATCTCAGTGGACAGCAACAGCGTGAACAGAAACGCTTTGACTTCAATGCTGTGGAGGCGGAGTACACACAGCCGAGTGAGCTGGACGCCTCCTCAAGCTCTGCACGACATTTGCTGGATGCACAGCCCACCACATCCTCCTCGTCCTCGGTTTTGCTAACTGGCCCACCAATAGCCTCGACATCCCGTGCCGCTGCTgaagcagcggcaatggcacaACGAAAACCACCACGTCGCAAGATTTACAAGTGTCCACATTGCGTCGCAATTTTCGAAAAGCTTAAGGAGCGCAACGCGCACATGATTGGAGTACACAACTACGTGCGACAAAATCGTCGACTGATTTGCACGCAGGCGCTAGTACCAAACTCTGCAATTGAGGAACTTACGCAGactcaacagcaacaccatcaGCATCTACAACaagagctgcagcaacaacaacagcaacatatgCAACAGgctggcaacagcagctgcgttAACCTACAGGAAGATTCCAAAGATGGTATTGTGAAAATCAAACAGGAGAACTGTCAGGAGAAATCGGATACCTCAGAACAAATCCTCGACCGACTAGAGTTGCCCGATGTCAAAGATGCGGGCCTGCTGGAAGCTAGCAATGAGAACGGGCGTGCATCTGACAAAATTCCAGCTGATAACGTTGCTGAGTTGGACGAAAAGCCGACTCTAGCTCCATTGGCAATGACAACGCCCGCTGCCAAACTTGCGGCTCTCTATCGCATGCTCATTGAATACAACGAGTCTAAGCTTGGGCAGGAACGAAACAACTTGAGCGAATTGGAGCAAAAGGCGATGGAGAAATCGATATTTCTCTGTTACGTTTGTCGCACCGACTTTCCCTCTGTGAAGCTCTATGACGCCCATCTGACTGAGCATCCCGCTGAGTGCTTCACTTGTGGCAAAAAGTTTTACCGCTGGAAGAACTTTTCATTGCATCTTAAGCGACATTTGGGCTGGAAGGAATTTGGCTGTTATGTCTGTGACAAGAAGTTTGTAGTACGCAGTGCACTCGTGGAACACATGCGCATGCACACAGGTCAATCGCCGctcaaatgcaaaatatgcgGTAAAAAGTTCAAGCGTTATTCGAACTTAACGCAGCATCGGAAGCGTCACACCAAAATACTTGTTCGTAAGAAGGAGTACGTGTGCCATTGTGGCGAAGTGCTTCCCTCTAAAGCCCGATTTTTGTGGCACAAAGAAACGCATGATCTGAAGCCAAAGTGTTGTCCGTATTGCTGCGATCGCTTTGTGCACGCCAACTCGTTGCGTCGTCATATACGCTTGGCGCACTctgataaatttgattatgcCGAGCCAGTGGAGTGTCCCATGTGTAAGCAAATCTTTGCGAAAACATCCATCAAGGCGCACATGGCAACACATTCGACAGATCCGCAATACGATTGCGCCATATGCAGTAAAAGCTTCTCAACCAAATGGAATCTCAAAATACACTCGTGGGTGCATGCTAATCGCACGGCTAAACCCTTTAAGTGCGAGTTCTGTCCAAAGGCATTTGTGCGCGAATTGGATTTCAAGAACCACATGAATGCCCATAAGCAGATCAAACCCTATACCTGTGAGTATTGCGGTTGTAAGTTTATACGCAAATACAACTATATGCGCCATCGTCGGGAGCATCATGGCAACAAGCAGTTTCAATGTGACCAGTGCGATAAGTCCTTCCATCGCCACTACTATCTTATAGAGCATCGACGGATTCATACGGGAGAACGACCCTTCCAATGCACAATTTGCGGCAAGAGCTCAACGACAAAGACCAATCACAACAAACATCTAAAAATTCATCATTCGCGCGATCCTTTCACTGTTGAGGTCTAA
- Protein Sequence
- MVDCVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGNNGIGSALATAVLAGSGSCASSDGASTLSQASADVKPAVPAIAPTVTATPPPTTSSKSTAPKAASLHGNASSNSNSNNNNNHNNNNNNNKLSNPPIKSGKSASPMTEASATSSNTPTTNNVAVVYPPSVPTEYRYDHQQQATQGTTTLHGFSRGSTTTLVIPQGPQHQHHFLATQQHFAHQQQSAMKYTYTTALPPPPPPPLQLFAHQPTTSQSHQKPPPAYGTAISQIRSQHNQNKHQQQNQHVSVQHNLNLAPPSGKHSKNHTDIFLNPPPPPQSTMGSTSSPSSRLQHVQQAHQSSTLPSNYGAPNYPTTPTGQITSMPTGRVSSRQANSSPFGALLNAAAQVACASPASSSASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEDDDEEDEDHNWVNSDDDDQGKTPSDHVEDGDDEREDSRSRAGPKTTTKKSRKTRPNGKVLKRGPKHQMDDEDDFISSAESDHQAHQLQNNGPQVSTTPPPLCIAPSTSIGAATASSNNANSTSTGNKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGAARPFAAVAPIPLVKVEKEEPIDDYDTVETSARSGEEEKPNLEHALGSSNSSSSSCSNGHGTTSVIRMASTSSSTNVPAEDLNQPPPMKVEVEPTTTLLPQRFSTPAQQRGPKKLVIKPKVMAAATSTTTSNCTESLSISKPPVELVHIKSENVEHSTLTGSILEKHLTTSYAAQQSRKHSAVNDDDARVLLDFANSKQQPLTGTSNQTTFVVNAASFASAGSVFASSSNAKKSAEPGDEYILPDNNLEVDEIVISSSSSFASSLQQAQEQQEATPSTDVAHLHNPDTPAFNDFNFLYHQTNPSTTAAASTSTFSPFGLQQQHQQQLQHPHNGSSEATNAATLASSSSNSSILDPESSMNATFRVAKPQSVHGAWYHPQQQQQQPPQATVTQGQNVEQSSNFIAALAAVDYCSAAADSDASDAKYLDLDTCKREQLSNSSSHLPSASTSTTSSFAAAATESSLVGGLGLHIRTDEKMPAKGEISEQESNCDIENSWSQSIYGDISQRYFRNQFTDGYNQQLADWRNDFYPAQDLSGQQQREQKRFDFNAVEAEYTQPSELDASSSSARHLLDAQPTTSSSSSVLLTGPPIASTSRAAAEAAAMAQRKPPRRKIYKCPHCVAIFEKLKERNAHMIGVHNYVRQNRRLICTQALVPNSAIEELTQTQQQHHQHLQQELQQQQQQHMQQAGNSSCVNLQEDSKDGIVKIKQENCQEKSDTSEQILDRLELPDVKDAGLLEASNENGRASDKIPADNVAELDEKPTLAPLAMTTPAAKLAALYRMLIEYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQSPLKCKICGKKFKRYSNLTQHRKRHTKILVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPVECPMCKQIFAKTSIKAHMATHSTDPQYDCAICSKSFSTKWNLKIHSWVHANRTAKPFKCEFCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKQFQCDQCDKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -