Zlin000490.1
Basic Information
- Insect
- Zaprionus lineosus
- Gene Symbol
- salm
- Assembly
- GCA_035044505.1
- Location
- JAWNNX010000025.1:316492-324263[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.1e-06 0.00018 21.9 1.7 1 23 334 356 334 356 0.98 2 8 3e-05 0.0025 18.3 3.5 1 23 362 384 362 384 0.98 3 8 2.1 1.7e+02 3.1 2.5 5 23 628 646 625 646 0.84 4 8 3.1e-08 2.6e-06 27.7 0.2 1 23 652 674 652 674 0.98 5 8 0.00093 0.079 13.6 0.9 1 23 684 706 684 706 0.98 6 8 2.6 2.2e+02 2.8 0.0 2 23 919 941 919 941 0.93 7 8 1e-05 0.00086 19.8 5.0 1 23 1075 1097 1075 1097 0.96 8 8 8.1e-08 6.8e-06 26.4 0.7 1 23 1103 1125 1103 1125 0.98
Sequence Information
- Coding Sequence
- ATGTGTTCAATATTTCGCAATCGCATCAATTATCGGGGCACAGGGACGCGTACCGCTGCCTCTAACAGCGGTACCCCTACCGGGGCTTCCTCAACGGGTGACCGGGAAGGATTGCTGGCCAAGGAGTTGAACGCTGATAGTAACAACAATGGGAGTGCAGTTGAGGACACTGCGGATCATGACTCGGAAGCGGAGCTACAGCTCGAGCCGCAAAGCCCGGAGCAGCAGGAAAACAGCAACGAGGCGTTGGATCTGTCGGTGCTCTCAGGAAGTCGCCTACCAACCAGCGGCCACGTGGCACTCGAAGCTTTACAACATACCAAAGTGGCAGTAGCCCAGTTTGCGGCCACTGCGTTAGCGGGAGCAGCCGATCGCACCGACCTGGCCATGGTGCAGtcaacaattttcaatgtGCAGCGGCAGCATCTGATGCAGTTGCAGCTTATCCAGCATCTACAGAGTCAATTGAAGCGGGCCGGGGGTGTGGTGGCTGCGCTTAACAGGCAGGATCAAAAGCTTGGGGAGccagatgaagatgatgacgatgatgcaGAGAAGCAGCCGAATACTGCCAAAGAACTGCCGCGTGAAAATGGCGGGGACGAACACGACGACGGAAAGCTAGAGGAGAGTTCAAAGACTGATATAACGAAAATATCCATGAATAGGGAGGCAGCAGACAACGAGCGCCATAAGAAACAGGACCGATCATTTCCCGCAAAGCTGAACGAGAAGGAGTTCGAGCCTGACGCCGAGCAAGAGATGGAAAGCGATTATCAGCCAATTATGTGCGATATTAGCTCCAGTCTGGCGTCCAGCATCATTACAAATCATGATCCACCGCCGGCACCAAATGAGCCCAATTGCCTGGAGATGCTTCAAAGGCGTACCGAAGAGGTGCTGGACTCGGCTTCGCAAAGTCTACATGCTGCCCAGTTACAGGAAGAATACTCGGAGTACGCCTCGAAGGAAGCCCAAAGTCGCGGCGAGATTTTTAAGCACCGATGTAAGTACTGCGGCAAAATCTTTGGCAGCTACTCGGCCTTGCAGATCCACCTGCGATCACATACGGGGGAGCGACCCTTCCACTGCAACGTATGTGGCAGTAAGTTCACCACAAAGGGCAATCTGAAGGTTCACTACCAGCGACATACGCAGATTTTTCCGCCCATGTTACTACCTCCAGGGGTAAATGGAGGTCCTTCTCCAGGAACGACTGATCAGTTCAGCAATTTGACTCCAATTCGTCTACCTTTCGTGCCTCCTGCTCCATtggcaccaccaccaacccCTGGCATTGGTCAATCCAGTCGAGAGCAGCCAACAGTGGAGGAACAACAGGAGCCTCAACCATTGACGTTATCGGTACCGGTATTACCCCAGCAGGCTGAGGATCTAAGTAGACCGACACGGGAAAAGTCTAAATCGCCTGTTGAACGTGTGCAGACGCCTCAGTCCATACCTGATTTAAGAAGAAGCCAGATCATAGGAGAGCCTCAGTTACAGCAACAAGTCGTTCACCCTGAGAAGCAGGAAAAGGACAAGCCGAAGGATAACCTAAAGCCAGCGACAAGTTCGTCGTCCCGTCGTAATGGAAACATACGAAAGCGTCAGACTAGCAACGCCGGTAGTCCCCTAGGAGAAGATTCCCTAAATGATCAGGCCGAACATCTACACATTGCCAAGCTGGTTCGTCGTTCTTCGTCGAGTCGCGATGGTAGCGTCGCCCTACCAGCAGAGTACTCATTGGCTCAAATGGAGCGCATAATTGACAAATCGTGGGAAGATTTAATAGAGATCGACAAGACTTCAGAGACTTCGAAACTTCAGCAGCTGGTGGACAACATTGAAAACAAGCTGACCGATCCAAACCAGTGTATTTTCTGCCAAAAGGTCATGTCCTGCCGAAGCTCTCTGCAAATGCACATCCGCACCCACACCGGAGAGCGACCGTTTCGCTGTAAGATTTGCGGAAGAGCCTTTGCTACAAAGGGTAACCTGAAGGCACACATGAGCATCCACAAAATAAAGCCGCCCATGCGTAGTCAGTTTAAGTGCCCGGTTTGCCATCAGAAGTTTTCCAATGGAATCATCCTGCAGCAGCATATTCGCATCCATACAATGGACGACAGTAGTGGCAGTCAGATTCAGGCGCAGGGCCAACACATGAGCTCAAGCGATGTGGAGCGCTTGGGAGTGGAGGATCAAAACTCCAATAAGTCATTGGGTACATCCGATACCTTGGACTTCTCGACCACCATATCCGATCACTCCGGACAGCGTTCGGAGTCCTCGCAGGGAGGGGACTTTGATGAGTTCATGACCATGGACAGCACAGACGACTCCCGTGATAACTCAAGCGCTGCAACGGTCACGCCCCTCGACAGAGACAGACGACCCGCCCATGACTGCAGTGAGGAACGATCCAGGTCGGATTTGGATGGCTGTGGACCTGACAGCATCAACGGCGAGATGCCAGCAATAGATCTCTCATCGCCATCATCGGCGccgacagcaacggcaacagctgctgcggcagcagcGCGCCTCTTTGGAGTACCAAACGGCGGAGTTGGCAGTGTCGCCGGAGCTTCCGCTGGAGCGCTGCCCATGCTCGGCATGCCCATGCCCCCAAATCTGCTGCTAATGGCAGCAGCACGCGAGGAGATGCACGCACTTGGGCAGGCGCATGCCAAGTTCCCGCTGCTGCCCTTCGGACCGCTCGGATTCATGGGTCTCCAACCGCCTCCAAACGTGTGCAATCTGTGCTTCAAGATCTTGCCCAGCATCGCCGCTCTGGACAGTCACTTGCAGAACGAACATGCCAAAGAAATCACGGGCTCTGCCCACCGAGCCCATAGCAACGATGCGTCATCGCCCTACGGAGCCAAGTTGACTCTCAATCCGAATCTGTTTGCCAAGAAGTCAAAGCCAGCCCAGGATCTGGCGCCAGTTGAGACAGTCGTACCGGTGACGGCATCCATCAAAGAGGAGCCTGAGATTGAGCAGCAGATCCCTGAAAAGTCTGCCTGCGAGGGTGCTGGGGCGGCGGCAGCTTCCGCCGGTGGGTACCAGCCGGAGACCTCCGCGGATGCCGAACAATCGCTGATGAAGATGCAGCTGCATGCGCATCGCTTTCCAGCTAGTCCTCTGGACTTTCAGCAGGCGCTAATGTCCGCCGGTCCACCGAGCTCCACACTTGATCCGCCAGTTAACAACAAGCACTTTTGCCACGTGTGTCGTCGCAACTTCAGCTCCAGTTCCGCCCTCCAGATTCACATGCGCACCCACACCGGAGACAAGCCGTTCCAATGCAATGTCTGCCAGAAGGCTTTCACCACCAAGGGTAACCTCAAGGTTCATATGGGCACGCATATGTGGACGAATCCCACATCGCGTCGCGGACGTCGTATGTCCTTAGAGCTTCCAATGCGGCCTGGACCTGCACCTCCAACGGCCCATGGAGTAACCACTGCCGAACAGGACTTCATGCAACGACGGCCCGAGCTCTTCTTTCCCTACTTACCACCCTTTTTCAACGGAATGCCCCCAAAGCAGGGCGAGCTGAGTCCTGGTGCATTTGCGAGCATCCCCCCACCGCACTTTGCGAACGGAGCTAAGTATCCGTATCCTCCAGGACTGCTGGGCTTTCCAGGATTCCTTGGGGGTGCTGGTGGTCAGCAGCTGCACCCATATGGGGCAGAGCGCCAAAGCAACAGTAAGTCGCCAACATCGGAACCAGCGCAAAGTCCCTCATCGAAGGAGGACGACGGGTTCACGAACAATAACATTTGGCATCCCCTGAGCAGAATCAAGATGGAGAACAATCAAATCGAGAGCATTGGCAATCACAGCGAACATGAGCAGGAGAACGAACAGGAGCTGGCACATGAGCACGAGCTGGAACAGGATCTCGACGAGCATCGGGATCCCAGGGCCGAGACAGATGCGGAGGATTCAGAGTCTCGCGAGGACGAGAAGTAG
- Protein Sequence
- MCSIFRNRINYRGTGTRTAASNSGTPTGASSTGDREGLLAKELNADSNNNGSAVEDTADHDSEAELQLEPQSPEQQENSNEALDLSVLSGSRLPTSGHVALEALQHTKVAVAQFAATALAGAADRTDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALNRQDQKLGEPDEDDDDDAEKQPNTAKELPRENGGDEHDDGKLEESSKTDITKISMNREAADNERHKKQDRSFPAKLNEKEFEPDAEQEMESDYQPIMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQLQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPGVNGGPSPGTTDQFSNLTPIRLPFVPPAPLAPPPTPGIGQSSREQPTVEEQQEPQPLTLSVPVLPQQAEDLSRPTREKSKSPVERVQTPQSIPDLRRSQIIGEPQLQQQVVHPEKQEKDKPKDNLKPATSSSSRRNGNIRKRQTSNAGSPLGEDSLNDQAEHLHIAKLVRRSSSSRDGSVALPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDSSGSQIQAQGQHMSSSDVERLGVEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATVTPLDRDRRPAHDCSEERSRSDLDGCGPDSINGEMPAIDLSSPSSAPTATATAAAAAARLFGVPNGGVGSVAGASAGALPMLGMPMPPNLLLMAAAREEMHALGQAHAKFPLLPFGPLGFMGLQPPPNVCNLCFKILPSIAALDSHLQNEHAKEITGSAHRAHSNDASSPYGAKLTLNPNLFAKKSKPAQDLAPVETVVPVTASIKEEPEIEQQIPEKSACEGAGAAAASAGGYQPETSADAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPSSTLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPAPPTAHGVTTAEQDFMQRRPELFFPYLPPFFNGMPPKQGELSPGAFASIPPPHFANGAKYPYPPGLLGFPGFLGGAGGQQLHPYGAERQSNSKSPTSEPAQSPSSKEDDGFTNNNIWHPLSRIKMENNQIESIGNHSEHEQENEQELAHEHELEQDLDEHRDPRAETDAEDSESREDEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -