Zlin005282.1
Basic Information
- Insect
- Zaprionus lineosus
- Gene Symbol
- -
- Assembly
- GCA_035044505.1
- Location
- JAWNNX010000225.1:282990-286135[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.8e-05 0.005 17.4 5.2 1 23 168 191 168 191 0.97 2 16 1.2e-05 0.001 19.6 2.3 1 23 238 261 238 261 0.98 3 16 0.002 0.17 12.6 3.2 1 23 324 347 324 347 0.96 4 16 0.0076 0.64 10.8 0.4 2 23 400 421 399 421 0.96 5 16 1.6 1.3e+02 3.4 2.1 1 21 534 554 534 555 0.85 6 16 0.018 1.5 9.6 0.6 1 23 564 586 564 586 0.94 7 16 0.00026 0.022 15.4 2.1 1 23 593 615 593 616 0.95 8 16 0.00015 0.013 16.1 1.6 2 23 624 645 623 645 0.96 9 16 0.17 14 6.5 0.0 3 22 673 692 671 695 0.88 10 16 0.0013 0.11 13.2 1.1 1 23 732 755 732 755 0.96 11 16 0.54 46 4.9 1.1 1 22 762 783 762 783 0.96 12 16 0.0087 0.74 10.6 0.9 1 23 792 815 792 815 0.97 13 16 1.5e-05 0.0012 19.3 0.5 1 23 834 857 834 857 0.97 14 16 0.034 2.9 8.7 0.2 1 23 867 889 867 889 0.94 15 16 2.2e-05 0.0019 18.7 3.3 1 23 895 917 895 917 0.99 16 16 4.7e-05 0.004 17.7 0.9 1 23 923 945 923 945 0.98
Sequence Information
- Coding Sequence
- ATGTCAAGAACATGTCGAATTTGCGGTGGAGCAGATGGACGTTATTGGATCGAATCAACAGTTAATAAATATGCggaaaaaacttttaatcaacTTCTGATGGAACTAACAAGACTTGAGGTTGCCCCGAATCAAGCTGATAAGCTGCCATCGTGGCTCTGTCGCAGCTGTGTTCACAGACTTGAAAAAGCGTATGACTTTGTGTTGCAAGCACGTAGAACTCACGAGCTTTGGCTACAAAAGCTGTCAGCAAGTGAGGCTTCTGATGACATGGAGGCTGGTCCTTTGCAGTGCTTAAGAGAGACGCCTATACAGCTACTTGAGATCGAGggtataacaataaaaatggaagAGCCATCTGAACCAACCTTACCCCAAGCAGACCCATGTGCTTTAGTTGATCCGTTGATTAAAAAAGTGAATTACACTGACGACAGcgacgataatgatgatgttccACTTAAGCAACGCAGGGAGTCCGTCTCAAAGTTATCCAAGCTTCACAAATGTAATAAGTGCGATAAAGTGTTTAAGTACATAACGAATCTCTTTAGACACAAGCAGAGGGACCATAGTCCTGAAAGCAGAAAACCAAAGTCACCGGAAGAACTTTCACGGATTCCGCAACCTGACTCGTTGCGAAACAAACTCCTAAAAAAATCCACTAACGTTGGAATTTTAGATTCCGACAATGAAGCtatggaaaattattataagtGCGACAAATGCGATAAGTCCTTTAGGTACATAATGCTTCTGATAAAACACCAACAGAAAACGCATAGCGCCCTCCAGTTGCCAACAGACTTAAGAGCCATACAAAAGAGTGAACGAAGTACAGACCCTGCCTCAAGGCAAAGTCCTGTGCGATCAAAACCCCTAAGCACAGATTCATTGGTGCACAGCATTATCAAGGAAGTGCAAATTCCAGATGAGGATGACTCGGACAACTTGGGTGCAGATAATTATTATAAGTGCGACCAGTGCGAAAAGTCCTACAAATATATTGTGAGCCTTATTAAGCACAAGCATAAGGAGCACAATGCCTACAAGGATTccgatgaagatgaagacgatGCATCACCGTCAATTCGGCGTACACATACGATACCTTCAATGTCTAAGCCTTCACGTATCGATCGTCGCGTAAAAGGATTCGACTTAAATCGATGTAAGCCCAATGGATTCAAGGAGATTCAATGCATGATCTGCTTAAGAAGATTTATCAAATTAAGAGAGCTGCGTGACCATCTCAAAGCGCATCCCAGTGACCTTACCTTCGAAGCCCATGGCGAACCAATTGAACGCCTAGCCGAAGGTTTCTACAAGACCGCCGTGGAGTCAACAGCCACAGGTCTAAAGCAGCGCATTCTTAATGACCTGAAGGTCGGCCTGTACGGGCGATACTATTCGATTACAAACGAGGCTCGCTACGAAATGAATATTGATAGCTCGGACACCGATAGTGATGGTGAGGCCGGTGTTGTGGAGAGACGTAGCTATGCCTGTGAGCTATGCGATTCTCCTTCTGCCGTATGGCCACGCAAGTACCAGCTGCATGAACATCACAGGCAGAGTCACACTTGGCTGGAGGCTCCACATGTTTGCAAACGTTGTGATTCCCGTTTCCTAAGCGCCCAGCTGCTGAATCATCATACACAAAAACTGTGCCAAAACACGCTTAAACGCTTCATGTGCGACAAGTGTCCACAGCGCTTCTTTTGGCGCCGCAACCTACGTGCGCATCTCGTcgagcacaaaaacaaaCAAGATAATTATCCCTGTGATCAGTGCTCGCGCAGCTTTCAGGACAAGAGCGCCGTGACTAAGCACAAGCTTATGCATCACGATGTAAGCAACGAGCTTCTACCCTGCCGCTGGTGCACACGCACATTCTACCGTCCAGCTCTGTTGCATAAGCATGTGCGGCGACATGGCTTCACAGGGGAAGATCTGCCATTGGCGGAAACACTGTTGGCGGATGCAGCAAAACCCGCCGGACCCAAGTCGATCATATGCAAACTGTGCAACATGCAGTTCGTAAGTGTTCCGGACTTAAGAGGTCACATTGCGATAGAGGGTCATGACGACCAGTCCTCAAACTTTATGATAAGCACCATCGAGGGCTTTGAGCTGGAAGTAGATGAAACGGACGAGAGTGATGATGATATAAGCCGCTCTATGGGCAGGTCGTATAGGTGTGGTCTTTGCGACATGACATTCCAACGGCGGCGAGACATGAACGAGCACCAATACTCATTGCACACGTTTGACAACTTGCCCTACAGGTGTGAGCATTGCATATTCAAGAGCGTGGACAAGACCATGTTGGAGTATCATCTACGTACGCAATGTCTAAACCAAGAGAAGAAGTTCAAGTGCTCGCGATGTGGTTACAAATTTATGTGGCGCGAAAACCTGGAGCTACATACCGCAACTCAGCACTCCAAGTCATCCAATTCGACACCTGTTGCTACCAAGCGAAGTAGACGCTTCAGATACCAGTGTCCACACTGCTGGCGCTCCTTTGTGGTGCAGCCCAGCCTGGACAAGCACATACGGGACATGCACGTAGCCAAGAAGAACCCAGGCAAGAAGTACCTATGCTCTCTTTGCGGCCTGGAGTCCCTAACGCCCAACAAACTCAACATACACATGCGACGTCACAACGGAGAGAAACCATTCAAATGCGACCTCTGCGACATGTCCTTCACCGTGCACTACGAACTCAAGGTTCATCGCCGGAAACACACAGGCGAGCGTCCCTATCAGTGCACGTTCTGTGCCAAGGACTTTGCGAGGCCGGACAAACTTCGACGGCACGTGTACATGCATAGTGTTAAACGTTAG
- Protein Sequence
- MSRTCRICGGADGRYWIESTVNKYAEKTFNQLLMELTRLEVAPNQADKLPSWLCRSCVHRLEKAYDFVLQARRTHELWLQKLSASEASDDMEAGPLQCLRETPIQLLEIEGITIKMEEPSEPTLPQADPCALVDPLIKKVNYTDDSDDNDDVPLKQRRESVSKLSKLHKCNKCDKVFKYITNLFRHKQRDHSPESRKPKSPEELSRIPQPDSLRNKLLKKSTNVGILDSDNEAMENYYKCDKCDKSFRYIMLLIKHQQKTHSALQLPTDLRAIQKSERSTDPASRQSPVRSKPLSTDSLVHSIIKEVQIPDEDDSDNLGADNYYKCDQCEKSYKYIVSLIKHKHKEHNAYKDSDEDEDDASPSIRRTHTIPSMSKPSRIDRRVKGFDLNRCKPNGFKEIQCMICLRRFIKLRELRDHLKAHPSDLTFEAHGEPIERLAEGFYKTAVESTATGLKQRILNDLKVGLYGRYYSITNEARYEMNIDSSDTDSDGEAGVVERRSYACELCDSPSAVWPRKYQLHEHHRQSHTWLEAPHVCKRCDSRFLSAQLLNHHTQKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKNKQDNYPCDQCSRSFQDKSAVTKHKLMHHDVSNELLPCRWCTRTFYRPALLHKHVRRHGFTGEDLPLAETLLADAAKPAGPKSIICKLCNMQFVSVPDLRGHIAIEGHDDQSSNFMISTIEGFELEVDETDESDDDISRSMGRSYRCGLCDMTFQRRRDMNEHQYSLHTFDNLPYRCEHCIFKSVDKTMLEYHLRTQCLNQEKKFKCSRCGYKFMWRENLELHTATQHSKSSNSTPVATKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -