Zlin012557.1
Basic Information
- Insect
- Zaprionus lineosus
- Gene Symbol
- zfh1
- Assembly
- GCA_035044505.1
- Location
- JAWNNX010000591.1:3362729-3366965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.5e-05 0.0022 18.5 1.0 1 23 147 169 147 169 0.97 2 15 0.0013 0.11 13.2 1.8 3 23 177 197 175 197 0.94 3 15 0.00014 0.012 16.2 0.1 1 23 357 379 357 379 0.98 4 15 0.00077 0.066 13.9 0.6 1 23 385 407 385 407 0.98 5 15 3.2e-05 0.0027 18.2 2.2 1 23 438 461 438 461 0.95 6 15 0.00031 0.026 15.1 2.8 1 23 492 514 492 514 0.95 7 15 0.019 1.6 9.5 2.8 1 23 520 543 520 543 0.96 8 15 0.025 2.1 9.1 0.4 3 19 552 568 551 569 0.95 9 15 2.8e-05 0.0024 18.4 4.5 1 23 578 600 578 600 0.97 10 15 0.038 3.3 8.5 1.2 2 23 606 627 605 627 0.96 11 15 8.6e-06 0.00073 20.0 1.0 1 23 636 658 636 658 0.98 12 15 0.00098 0.083 13.6 0.1 3 23 666 686 664 686 0.97 13 15 5.2e-05 0.0044 17.6 0.5 1 23 692 714 692 715 0.95 14 15 0.046 3.9 8.3 0.4 1 23 725 747 725 747 0.97 15 15 0.00013 0.011 16.4 0.6 1 23 1273 1295 1273 1295 0.98
Sequence Information
- Coding Sequence
- ATGAACAATCCAAGTTATGGCGCCATCCAATGGATTCAACAGCAAGCTACGGCGGTCGAGTCAGATATGTTGGAAAACGGCGCCACCGATAGTGAGGTGACAGCCGCCTACCTAGTGAGTGGTAATGCAACCGACGAAGATCTAGACCAAATGGCTGCTGAGAATCTCATCTTTATGGCTCGCGATGGTCACTTAAGTGAGATTATCGCTGCTAACGAGGGTGGGAACACCGTCTTAATTACCGATGGCGGGTCTGTTGCCTATGGAGAAGCATTTGACGATGACGCAGAGGTGGTAACAGAAGAGATTATTACTGATGATTGGGTGCAGCACCAGGGAGCTGAACGTGTGGAAATTGCAGCTGAGCAAATTGCAGGAAATAGTAGTTCGCAAGAGCTGCTAGATATGGAGCAAGATGAGTACACGGCATTGCGTCCGTACCCCTGTGATTTCTGTAGTCGGCGTTTTCGGAAAAAAGCCAGTTTAAATAATCATATGCTTGCACATCAGAACGATCGCCCGCATTTGTGTAAGCTTTGCGGTGCACGTTTTTCGCGGCGCACAGAGCTTATTAGTCATTTTAAGGCCCATGCCGAAGCTCAGGATGCTGCGGatgcagaagcagcagcggtagcggCAGCGTCGACAATAAAAGTCGAGCCGCAACAGCACCATCGACAATCAGATGATCACTTTTACGACCAAGAATGGCGTTTATACCAGGATCAGGAAGACgtgcaggagcaggaggaagaACTAGAGGAGCTACCCATTGCCAGTCAAGTTGTACAACAGACCAGCTATGCATCAGTAGTTGATGTTTCAACACCTCCAGCAACGCGTGGCCGTATTAGTCGTCTAAAACCCAAGGAGGAAAGCACACAGTATATTGTTGTCTCTGATAAACAAACTACAGACGATTTACATGAACTTGTGGAGTCCACTGATCTGGCACCGTCGCTCGATACGTGTACAGCTTCAACCAATACAATAAATCAGACGAGTAGTAGCCAAAAATCAGATGCTTCGGAAGGTCCTCGTTTTCCAGTACTGGACGAAAGCAAACCCTTCGTGTGTCAGGAGTGCGGTCTTGCATTTGCGCGCGAAAAAGCCCTCGTTTCCCATACAAAAaaTCATCGTGTGGACTCCATTTTTGAATGCAATCAGTGCCAGGAAATGTTTTGGGATAATAATAGTCTGCAGGAGCATCTAAAGACGCATCAATTTGAGGAGAGTAACTCGGAATATGATCCGGCGTCGGCGGGAGAGGACAGTGCAAGCGAAACGGAGACGGAACAGCTGTATggtaatttttattgcagcgAGTGTGGCATTTCCTTTCACAGGCAGGACCTGTTACGTCGCCATgccaagcagcagcacaaacaGCTAACAGGCGGTGCTGTCGCTAATCAAAGCCCAACCGATGCGGAGGGCAGCGTCGATGATACCGAGAATGCCAAAGATGCGACGCATTGTTGTCACACTTGCGGCAAGTCTTTTTCAAGCGCACTGGAATTGCTTGCCCATGCTGAGATTCATGCACGTTTCCCACCCTTTAAATGCGTTTTGTGCGGCCTAAGTTTTAATGAGGAGCATGCCATTAAACGACATCTGCACAGTCGCCACCAGAATGAGCTTAAACCCAACTCGTGTGTTTTGTGTGGCAAGGAGTGTCGGGATCGCAAGGCACTAATTAAACACGCATGGGATCATTCGCGCGAGAAGTGTCATTCATGCCCAAAGTGTGGCAAGAACTTTCATAATAAGGCGCGGCTGAAGCGTCATATGGCTTCGCATCGTGACAAATCAGTGGTGTGTGAGGTGTGCCATGAAGAATTTCCTGACGGTCGCACCTTGTCCAATCACCGTCATTCGCATAGCACAACTTCGCCGGGTAAACTGTTTCCGTGCCACGAATGTGGCAAGACCTTCGGATCCCGTAGCTCACAGCAGATCCATGTTCGTATACATACCGGTGAGCGACCGTATGGATGCCGCTACTGCTGGAAGGCTTTTGCCGATGGTGGTACTCTACGTAAACACGAACGAATTCACACAGGCGAGAAGCCATATGCTTGCTCTGTGTGTCCACGTGCCTTTAATCAGCGTGTAGTTCTGCGCGAACACATACGCTCCCATCATTCGGGTCTGGATGAAATCCGTGGCACTTACCACTGCACCGTCTGCAGTGCTGATTTAACGTCATCAAATGACCTCATTCAGCATCTCATTCAACACAGCGACACAAACACCGCCAAGCAGCGACAGCCTATTACCGGACCCCGAAAGTACAAGCGACGTAGAAAACTGCAGCCCCATGAGATAGCTCATATGCGCGGCGAGTACAAGGACCTTGATGACTTTACAAGTGACATGGATCTCGATTGCGATCTGGAGAACGTGGGTGAGTTCTTTGATAGACCTGATCCAACTCCACCAAAAAGGGAGAAAAGAAAACGCAACGCTGCTGTTCAAACGAAAGACGAGGACCACAACGAAGCAATGCCTGCCCAAAATAGCTCGAATCCAGTCAAATCTGCGAACAACAATACAGACCGTCTTTGGGACGATAAACTTCTTCAAACAAATGGCAATGGTAATGCAAATCAGTTAAGTGATGGGACATACAAGAACTTTTTCCAAATTGACTCTCTAGTGATGGTTAATGATACCGCCTTGCAACCTGTCACTTCCTCAAGTGTCTTCAGTCCACCCAAGACGAGGCGTGGTGGAAAGCACGCACAAACGCAAGTTAAGTCTGAAAGTAATGAAAAGCCCGTATCAACTGCTGGGGATGGCGATAGCAAAGCTAATGTTTCGTCCACCACTAATAATCGTAGTGGCAGAAAGAAGTCTAGCAGGTCGGCCAAAAATGCAGCACAGGCAGCGTCTACATCCAGTGGCTCGCGTCCTCGTATGATACATACCGAGAAATCACGTGTGCCCCAAGAGAATGCATCATCGAAAAAGTCGACAAGGAGTCGTTCCAGTATCACCCGCGCCAACAGCAACGAGACCAGTCAACTGGGTGTGGTCAAATCTAGTGGCGTTGCTAGTTCGCGTATGGTCGACGACTATGAAATCATTTCACCTGCCACACAGCCGCCTAATCAAATTAGCTCCAGTCCCCTGCACATTAAACAGGAGCatgaacaacagcagcagcgcttgCAGCTGATGTATGATGAAACGTTTCTACTGACCGACTCGGCGCTATTGCGTGAGAAGACTTACGAGAAGTTTAATCCAACTATTGTTCAAGATCTGGAGGAGATACTTCGCAGTCCACTTAAGAATGATCGTAGTACGCGTCTTCGTTTTACCAGCGAATCATCAACTACACCACAGTTTCTGCCTGAGGAGGtgcaaaatttgattaaaatagaGCCAACATCTCCAGATCTGCGTGAAATGGTGGAGAGCCAGCAGCGAGTTATATCCGCAGGACATCCTGGAACGCCCACTACGTCATCTTCCTCCACGACGGCACGTAACCTGCGTCATTTACGACAACTGACTGCCAACTCAAGCTCCCGAACAAAGCACCGTAACAGCAGTAAAACAGCCTCCTCGTCCAGTTCCAAGAAGTCTACGTCaccttcatcatcatcgccgttAAATGCAGTTAACAAACCAAACTCGTACCTGAGCTATGGTGTGGATTCTTATAATGTGAGTGTAGCTGCCAGTGCCAACTCTTCGGATGTAAGTTCCGGCTTCTTTTCCATCTCCGAAGTCgtttctgctgctgatgctgccgatgcagcagccaaagcagcagcagcaaacaatACAGAACGCAGGACGCGTAGCTTTGAATGTGAAATGTGCTCTACTAAGTTTCCTGATCGTGCCCAGCTGCTGgaacacatgcatatacacatatag
- Protein Sequence
- MNNPSYGAIQWIQQQATAVESDMLENGATDSEVTAAYLVSGNATDEDLDQMAAENLIFMARDGHLSEIIAANEGGNTVLITDGGSVAYGEAFDDDAEVVTEEIITDDWVQHQGAERVEIAAEQIAGNSSSQELLDMEQDEYTALRPYPCDFCSRRFRKKASLNNHMLAHQNDRPHLCKLCGARFSRRTELISHFKAHAEAQDAADAEAAAVAAASTIKVEPQQHHRQSDDHFYDQEWRLYQDQEDVQEQEEELEELPIASQVVQQTSYASVVDVSTPPATRGRISRLKPKEESTQYIVVSDKQTTDDLHELVESTDLAPSLDTCTASTNTINQTSSSQKSDASEGPRFPVLDESKPFVCQECGLAFAREKALVSHTKNHRVDSIFECNQCQEMFWDNNSLQEHLKTHQFEESNSEYDPASAGEDSASETETEQLYGNFYCSECGISFHRQDLLRRHAKQQHKQLTGGAVANQSPTDAEGSVDDTENAKDATHCCHTCGKSFSSALELLAHAEIHARFPPFKCVLCGLSFNEEHAIKRHLHSRHQNELKPNSCVLCGKECRDRKALIKHAWDHSREKCHSCPKCGKNFHNKARLKRHMASHRDKSVVCEVCHEEFPDGRTLSNHRHSHSTTSPGKLFPCHECGKTFGSRSSQQIHVRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDEIRGTYHCTVCSADLTSSNDLIQHLIQHSDTNTAKQRQPITGPRKYKRRRKLQPHEIAHMRGEYKDLDDFTSDMDLDCDLENVGEFFDRPDPTPPKREKRKRNAAVQTKDEDHNEAMPAQNSSNPVKSANNNTDRLWDDKLLQTNGNGNANQLSDGTYKNFFQIDSLVMVNDTALQPVTSSSVFSPPKTRRGGKHAQTQVKSESNEKPVSTAGDGDSKANVSSTTNNRSGRKKSSRSAKNAAQAASTSSGSRPRMIHTEKSRVPQENASSKKSTRSRSSITRANSNETSQLGVVKSSGVASSRMVDDYEIISPATQPPNQISSSPLHIKQEHEQQQQRLQLMYDETFLLTDSALLREKTYEKFNPTIVQDLEEILRSPLKNDRSTRLRFTSESSTTPQFLPEEVQNLIKIEPTSPDLREMVESQQRVISAGHPGTPTTSSSSTTARNLRHLRQLTANSSSRTKHRNSSKTASSSSSKKSTSPSSSSPLNAVNKPNSYLSYGVDSYNVSVAASANSSDVSSGFFSISEVVSAADAADAAAKAAAANNTERRTRSFECEMCSTKFPDRAQLLEHMHIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -