Zlin012180.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zaprionus lineosus
Gene Symbol
-
Assembly
GCA_035044505.1
Location
JAWNNX010000591.1:240723-242738[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00025 0.022 15.4 5.0 2 23 140 161 139 161 0.98
2 9 5.6e-07 4.8e-05 23.7 3.1 1 23 167 189 167 189 0.99
3 9 3.7e-07 3.1e-05 24.3 1.0 1 23 195 217 195 217 0.99
4 9 1.1e-05 0.0009 19.7 3.3 1 23 283 305 283 305 0.99
5 9 9.5e-07 8.1e-05 23.0 0.9 1 23 311 333 311 333 0.98
6 9 8.8e-07 7.5e-05 23.1 5.8 1 23 339 361 339 361 0.99
7 9 9.9e-06 0.00084 19.8 1.2 3 23 473 493 471 493 0.98
8 9 5.8e-06 0.0005 20.6 0.5 1 23 499 521 499 521 0.99
9 9 1.1e-07 9.2e-06 26.0 2.2 1 23 527 549 527 549 0.98

Sequence Information

Coding Sequence
ATGCATTTGAACCATGCAACGGCTGCCTCAGCTGCTATGGCCAACTACCAGCACTACGCGCCTTCACAACTGTCCTCGCACAATGTTggaggcggtggtggtggtgggggaggtGGAAGTGGTGGGTCTGGTGGCGGAGGTAGCTTAGTTTCCAATACTTTGCAACAACCGACCACCATTGCAAGTCTGCAGCAAAGTCCGTTCGCGCTACACCAATTGACCGCCGTACAGGCCATACAGCATCCCACCCATCAGGCTATGTTGCATCCGCAGCATCCGTTAGTGCACCTGCTCGACATctcaacaacgacaacgaataGTGGCGGCAACCATACGCCAGTATCGCCAATGAAACAAGAGGTGCAAAGCGTTATCAGCGAGGATGATTCTGTGGTAGATGATCCTCGTAAAAAGAAGCAATGCCACGTGTGCAAAAACAAGTTCCGACAGCTCACCACGTTACGCAACCATATGAAAATACATACGGATGAGCGTCCTTACAAGTGCAAACACTGTGACAAGGCCTTCCGGCAAATTTCAACGTTGACGAACCATGTGAAGATTCATACCGGGGAAAAGCCTTTTACGTGCAACATTTGCGCAAAGGATTTTCGCCAGCAGAGTACGCTCATTAACCACATCAAGACGCATAAGGCGGCTGAATCGAGCACGCCGACGTCGCTACTCAACTATCAGCCGCCGTCCTCATCCGGCAAACACAGCCGTAAATCGCAGAATCAGATGCATAATGCTTACCAGCAGCAAAATCAGCAGCGTGTTCAAATCTCAAAGACTCTATACTCGGGCACTTATAGCTCACCGCAGGCCGAGGAATTGGTAAAACCATACCAGTGCAGTGTGTGTAAACGTCGTTTCCCTCAGCTTAGCACGCTGCACAATCATGAGCGGACGCACATCGATCCTAAGCCGTATAAATGTGAGACTTGCGATAAGTCCTTCAGTCAGCTAGCGACATTGGCTAATCACAAGAAAATACACACTGGTGATAAGCCCTATACGTGTTCCTACTGCCACATGCAGTTCCGTCAGCAGAGCACGCTTACCAACCACATgaagacgcacacacatctcgccagccagccagctacagtcacagccacagTGGATCACTCAACCATGCCAGCACCCCTTGCACCTGGAACACATCAGCTGACGAGCGGCCTACTACCCAACAACCTGCACAGCACAACACCCAACATCCTACAACTGGATCACCATCCGCTGCTTCACTTCCTTGATGGCAGTACAACAGTTAGCTCTGTTGTGGCCAGCAATgttgcggcggcggcggccaATCCCAAGTCGGAGCACTACCAGGCCACTTCGCAAGCACCGCGCCTGAATGTGGGCAACATAAACATGTTGAAGAGCGAAAATCCAGATCGACCGTTTGGCTGCAGTGTGTGTCGTCGGTTCTTTTCTCAGCAAAGCACCCTGGTAAATCACATCAAGACACACACGGGAGAGAAGCCGTACAAGTGCAAGATCTGCGAGGTCAATTTCCGGCAAGTGGCTACGCTCAATAATCACATGAAGATCCATACCGGAGAGAAGCCCTACAACTGTTCCTACTGCCCCAAACAGTTCCGGCAGAAGAGTACGCTACAAAATCATTTGCGGGTTCACACGTGTTAA
Protein Sequence
MHLNHATAASAAMANYQHYAPSQLSSHNVGGGGGGGGGGSGGSGGGGSLVSNTLQQPTTIASLQQSPFALHQLTAVQAIQHPTHQAMLHPQHPLVHLLDISTTTTNSGGNHTPVSPMKQEVQSVISEDDSVVDDPRKKKQCHVCKNKFRQLTTLRNHMKIHTDERPYKCKHCDKAFRQISTLTNHVKIHTGEKPFTCNICAKDFRQQSTLINHIKTHKAAESSTPTSLLNYQPPSSSGKHSRKSQNQMHNAYQQQNQQRVQISKTLYSGTYSSPQAEELVKPYQCSVCKRRFPQLSTLHNHERTHIDPKPYKCETCDKSFSQLATLANHKKIHTGDKPYTCSYCHMQFRQQSTLTNHMKTHTHLASQPATVTATVDHSTMPAPLAPGTHQLTSGLLPNNLHSTTPNILQLDHHPLLHFLDGSTTVSSVVASNVAAAAANPKSEHYQATSQAPRLNVGNINMLKSENPDRPFGCSVCRRFFSQQSTLVNHIKTHTGEKPYKCKICEVNFRQVATLNNHMKIHTGEKPYNCSYCPKQFRQKSTLQNHLRVHTC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00901644;
90% Identity
iTF_00559629;
80% Identity
-