Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 6.2e-06 0.0083 16.3 0.3 14 44 82 109 75 109 0.88

2 7 0.23 3.1e+02 1.7 0.3 18 41 117 137 116 140 0.83

3 7 0.0036 4.8 7.4 2.1 2 41 130 165 129 167 0.88

4 7 0.0021 2.8 8.2 1.8 2 41 158 193 157 196 0.88

5 7 0.0026 3.5 7.9 0.6 2 40 186 220 185 223 0.87

6 7 1.4 1.9e+03 -0.8 0.2 18 27 229 238 225 247 0.81

7 7 0.0013 1.8 8.8 2.3 5 44 245 280 241 280 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	6.2e-06	0.0083	16.3	0.3	14	44	82	109	75	109	0.88
2	7	0.23	3.1e+02	1.7	0.3	18	41	117	137	116	140	0.83
3	7	0.0036	4.8	7.4	2.1	2	41	130	165	129	167	0.88
4	7	0.0021	2.8	8.2	1.8	2	41	158	193	157	196	0.88
5	7	0.0026	3.5	7.9	0.6	2	40	186	220	185	223	0.87
6	7	1.4	1.9e+03	-0.8	0.2	18	27	229	238	225	247	0.81
7	7	0.0013	1.8	8.8	2.3	5	44	245	280	241	280	0.84

Coding Sequence: ATGGAACAAGCTATAGATGTTGGCTGCGTCAAGGAGGAGCACTGTGAGGCAATTTGCAATATGTTTAAAGCTCAGGATTGGCAATTGACGATGAGGCACAGAGACTTAGGACTGGTTAAAATTGAACAAGACATTGGAATTGTTTGGCAAACCACAGGCACTACATTAATTGATGGCAAGGAGAGTCACACTGAGAAAATTACGCAAAACAAatTTCCAAGCGTACCAACTCGAATCGTTACTGACAAACCATTTAAATGCGCTCACTGCACCAAGGACTTTGCGACCAGTAGCAACTTAAAGGTTCATCTATCACGCACACATTCAGGCGATCGAGAACGTCCCTTTGAATGCCCCACCTGCCCAAAAACGTTTGCCACCAACGATAATTTACAAAAGCACATTCGCAGGCATTCAAATGAGCGCACCCTTAATTGTCCACACTGCCCAAAAGCGTTTGCCACTAAGGACAATCTTCAAAAGCATATTCGCAGGCACTCAAGCGAACGCAACCTAATCTGCCCACACTGTCCAAAGGCATTTGCAACGAACGATAATCTCCAAAAGCATATTCGCAGGCATTCAAGCGAAAGAACTCTTCAGTGCCCACATTGCCCAAAGGCTTTTGCAACAAATGACAACCTTCAGCGACACATACGGGGACACACCGGTGAACGTCCTTTCAAATGTCCGTACTGCCCAAAGCCTTTTGCCCAGAACAGAGATCTTAAAGCTCACATTTTGGAGCACACTGGTGAAAAACCATTTAAGTGTCCTCATTGTCCAAAAGCATGTGTTCGTAGTGAGGGTCTAAAGAAACATATTCTGCGACTGCACAAGGACATTGAACCAGAGGCCAGACTGACTGCAACTAACACAGCTTCCAAACAATGGCAACCCAGTGACAAGAACTTTGTCAACAATCCCACCAGCAGCGTCTTCATGTACAAATACGATTTAACCAAGCAAACACGAATGCCAACTGGTGAGGCGTAA
Protein Sequence: MEQAIDVGCVKEEHCEAICNMFKAQDWQLTMRHRDLGLVKIEQDIGIVWQTTGTTLIDGKESHTEKITQNKFPSVPTRIVTDKPFKCAHCTKDFATSSNLKVHLSRTHSGDRERPFECPTCPKTFATNDNLQKHIRRHSNERTLNCPHCPKAFATKDNLQKHIRRHSSERNLICPHCPKAFATNDNLQKHIRRHSSERTLQCPHCPKAFATNDNLQRHIRGHTGERPFKCPYCPKPFAQNRDLKAHILEHTGEKPFKCPHCPKACVRSEGLKKHILRLHKDIEPEARLTATNTASKQWQPSDKNFVNNPTSSVFMYKYDLTKQTRMPTGEA

Sequence clustering based on sequence similarity using MMseqs2