Zlin002724.1
Basic Information
- Insect
- Zaprionus lineosus
- Gene Symbol
- -
- Assembly
- GCA_035044505.1
- Location
- JAWNNX010000098.1:897250-933991[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.017 35 4.4 0.0 31 45 301 316 300 316 0.93 2 2 6.2e-20 1.3e-16 60.2 0.0 1 43 323 366 323 367 0.97
Sequence Information
- Coding Sequence
- ATGGGTTGGTTATCAAGTCCCAGAGCGGGCGCACATGGTGGCACGCCGCCCGCTCGCATCTTCAGTCGCACTTTGAGCAGCGTGCACTGCAGCGTCCAGCAGACCCACATTTTCGGACTCTCCTGTAGACGAGGCGCCATTAACAATACCGTAACGGGGTTGCACGCTCCCCTGCCCCACTCTGCCCCACTGCCTCCCTCCTCTTGCAGCACCCCCCATCCTGGCCGCCTTTGGCCTGCAATCAACGCGCTCTACCTACTCACTAATTTTGCTCTCTTCTGGTCATTTGCAATTAACACTTTTGCGTACGTGCCACAATTTGTTGCAACTTCatcagcagccagcagccagcagcagccggTGGCTGGCGGCCAGCTGGCAGCGCCGTCGGAGTTTTTCCAGCTTTCCAGCCGCCATCTGCAGCCGCCAGCCTCTAAACTCGAGCAACAGTTGAAGCTGCAGCCGCCGCAGTTGCCCCAGCCACCGCAGCTGCCACAAGCgccgcagctgccgcagcTCAAAGCTAATCAGCGTGCAACGACTTTCTCAGATGAGGATGCGGCAGAGGATGAGGctgaggacgaggacgaggatgaggcTGGGCCTCCTGCGGTTTCAAGGTTTGGGTGGTCAGGACAGGCGACAGTGGAACTTCTCTCCAATGTTTACCTACTGTGCATTTCCCTCCCGCCCCTCGTCTACATTCCCATCCCTCCCCCGTTTGCCTTCCTCCCCATTTGCTGCCCATTTACCAATTGGGCTAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTAACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGACACACGCGATCTATCAAGAACACTTTATGGACGCTGCAAGCGGGAGGGCATCGAGCTGTCGCGCTCCAATCCGACTCCTTGGTCCGAGGATGCTATGAACGAGGCGTTGAACTCAGTGCGTGTTGGTCAAATGTCCATCAACCAGGCGGCCATACACTACAACCTGCCCTACAGTTCCCTCTACGGGCGCTTCAAGCGCGGAAAGTATGACGTCGTCGCCAACACGAGCGGCGTCTCGCTGCTGAACAACACGTCGGGCAACACGACTGGCAGCATTGAGATTATCGAACATAGTCAGGAGAACTCGttGCATATGTTACAGCAGCAGTTCCCGTACAGCCCGTCGCCGCACGCGCCGCCGACGCCGCAGCATCACAGCACACCGCAGCACCACAGCTCGCAGCAGGGGCCACCGACGCCACAACACATGCAACAGCACGTGGTGCACATGCAACAGCAGTCGCCGCACCAGGcacaccatcagcagcagcacatgcagcagcaacaggacgTGGTTACATCGAGCAGCCAAGTGGTGCatagtcagcagcagcagcagcttcagcagATCTACCAGCACCATGGAACGCCGGAGCGAAGTTGA
- Protein Sequence
- MGWLSSPRAGAHGGTPPARIFSRTLSSVHCSVQQTHIFGLSCRRGAINNTVTGLHAPLPHSAPLPPSSCSTPHPGRLWPAINALYLLTNFALFWSFAINTFAYVPQFVATSSAASSQQQPVAGGQLAAPSEFFQLSSRHLQPPASKLEQQLKLQPPQLPQPPQLPQAPQLPQLKANQRATTFSDEDAAEDEAEDEDEDEAGPPAVSRFGWSGQATVELLSNVYLLCISLPPLVYIPIPPPFAFLPICCPFTNWANGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSRTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHAPPTPQHHSTPQHHSSQQGPPTPQHMQQHVVHMQQQSPHQAHHQQQHMQQQQDVVTSSSQVVHSQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -