Basic Information

Insect: Zaprionus kolodkinae
Gene Symbol: grau
Assembly: GCA_018901885.1
Location: JAEIFM010000288.1:4057491-4059499[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.4 1.7e+02 2.9 4.7 2 23 253 275 252 276 0.94

2 10 0.023 1.5 9.3 1.1 6 23 284 301 284 301 0.98

3 10 0.00013 0.0091 16.3 2.8 1 23 307 330 307 330 0.93

4 10 0.00015 0.01 16.1 2.3 1 23 338 360 338 360 0.97

5 10 0.00023 0.016 15.5 0.3 2 23 366 388 365 388 0.96

6 10 0.14 9.4 6.8 0.1 2 23 394 415 393 415 0.95

7 10 0.61 41 4.8 4.4 2 23 424 445 423 445 0.91

8 10 9.5e-05 0.0064 16.8 0.9 2 23 453 475 452 475 0.95

9 10 6.3e-06 0.00042 20.5 1.7 1 23 481 503 481 503 0.97

10 10 0.00099 0.067 13.6 8.9 1 23 509 532 509 532 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.4	1.7e+02	2.9	4.7	2	23	253	275	252	276	0.94
2	10	0.023	1.5	9.3	1.1	6	23	284	301	284	301	0.98
3	10	0.00013	0.0091	16.3	2.8	1	23	307	330	307	330	0.93
4	10	0.00015	0.01	16.1	2.3	1	23	338	360	338	360	0.97
5	10	0.00023	0.016	15.5	0.3	2	23	366	388	365	388	0.96
6	10	0.14	9.4	6.8	0.1	2	23	394	415	393	415	0.95
7	10	0.61	41	4.8	4.4	2	23	424	445	423	445	0.91
8	10	9.5e-05	0.0064	16.8	0.9	2	23	453	475	452	475	0.95
9	10	6.3e-06	0.00042	20.5	1.7	1	23	481	503	481	503	0.97
10	10	0.00099	0.067	13.6	8.9	1	23	509	532	509	532	0.98

Sequence Information

Coding Sequence: ATGATTTGCCGTCTGTGCCTAAACAGCGCCAACGATACCATACAAATATTTGAGGGTGTCGGCTTGTCCCAGAACGTTGCCGCTGTGCTGGCCAAATACTTTTGGTTTCAGCCCAAAAGCGATGATCCCATATCGACTGAGGTATGCATGGCCTGTTGGACACGTGTCAGCGAATTCAATGAGTTCTACCTAAGCGTGGAGAAGGCGCACCGCCTGCTCACCGAACGCTTCTCGCTGAAAGGCGGCGAACAGGAGCAGCAGCAGCAGGAGAAAGCGAGCAGCCCGAAGCAGGAGCAGCCCAGCGATGAGTCTTTGTCCCAGCACAGCGACGAAGATGCTGAGGATGAGTTGTGGCAGGACGAGTCGCTGTATGTGAGCGGCGGTGAGAGCGAAGCAGCTGCATCGTTTAGCAACGAACAGTTCCTCAACGATGTGCTGGCTCAGCAAGAGCATGCCGAGCGAGAGAAGGAGGAGGAGTTGGATGTGAAGCAAGTGCCTCAGCAGGAACAGCTGCCCGAACGGCGTGAGACACGCGCCACACGTGCCAAGAGCAAAGCGAATCAGGCCCTCGCCAATGAATCTCTGCCGCCAGCTGTAAAAACATCTACGCCCACTGTCAAACGCCGTGGCAGATCCAAGTCAGAGAAATCCAGCAATATCAGCAGCGTGGAGGATGTGCCAAAGAACAAGCGTTACATTGATTACAAGAAATCCATGATGGAAATCGATGCGAAAATAGCAAAGCATATGCGACTCACCTGCAACGTTTGCCACGAGGTGCAGGAGACGTTTCTGTTGCTCTGCAAGCACATGATGAAGGTGCATCATTGCAAGGGTTATGCCATGTGCTGCAACAAGAAGTTCTACAAGCGTTCCTTTCTCACCGATCACATCGATCGTCACTCGAATCCCGAGAAATTTAAGTGTGATCTGTGCGACAGAACGTTTGCGGACAAGCAGTGCTTGCGCAACCATGAGCTGCTCAAGCATCAGCCGGACGAGCAGAAGACTTTCATGTGCGAGCATTGCCCCAAGCGTTATACCAAGCAGTATTTATTGGATCAGCATCGTATCATACATATGGAGCGTAATGTGCCATGCGACATCTGCGAGAGAAGGTTCCCCAATGTATCCATGCTCTGTACACATGTCAAGATGGTGCATGGCAACTATGGCACCATGTGTGACATTTGCGCCCAAGTGATTCGCGGACGTGCTGCATTTCAGCGTCATCAATTGGAGCATGCGGGGATTACGGAGCCCAAGGTGCAGTGTGATATCTGTGGATCGTGGCACAAGAACAAGTATAGCTTGAAGAAGCATGTGCGGCGTCACAATGGCTCCTCGGAGGAATGCACCTGCAACATTTGTGGCAAAGTGTCGCCCAATCGCAGTGCCATGTTGAGTCACCAGCGATATGTACACAATGCCGATAGGGTGCATGTGTGTAGTGTGTGCTCCAAGAAATTCAAGAAAGCCATCAATCTCAAGGAGCACATGGCCACACATACCGGTGAGGTGCTCTACAAATGTCCACACTGCCCCAAGACATTCAATTCGAATGCCAACAAGCATTCGCATCGCAAGAAATGTCATCCCAAGGAATTCGAGGAGGCGCGCAAGGCACGCATGCAGAATCGCATGGCACCAGCAGCAGCGCCAGCTGGAGCCAGCGTGGCAGTTGTTGAAAGTAAATCCAGCCTGATAACTATCACCACAACAGGCGATGCCGATGGACAGGTGGAGACGCACAATATACTCGTGACAACGACGACGGAGGATGCAGAGGATCATAGCGCTGAGGAGGGATTCAAGGGCGAGGAGTTGGATTTCATGCTATCGCTCAGCCCGCAGCCGGCGGCGGAGTAG
Protein Sequence: MICRLCLNSANDTIQIFEGVGLSQNVAAVLAKYFWFQPKSDDPISTEVCMACWTRVSEFNEFYLSVEKAHRLLTERFSLKGGEQEQQQQEKASSPKQEQPSDESLSQHSDEDAEDELWQDESLYVSGGESEAAASFSNEQFLNDVLAQQEHAEREKEEELDVKQVPQQEQLPERRETRATRAKSKANQALANESLPPAVKTSTPTVKRRGRSKSEKSSNISSVEDVPKNKRYIDYKKSMMEIDAKIAKHMRLTCNVCHEVQETFLLLCKHMMKVHHCKGYAMCCNKKFYKRSFLTDHIDRHSNPEKFKCDLCDRTFADKQCLRNHELLKHQPDEQKTFMCEHCPKRYTKQYLLDQHRIIHMERNVPCDICERRFPNVSMLCTHVKMVHGNYGTMCDICAQVIRGRAAFQRHQLEHAGITEPKVQCDICGSWHKNKYSLKKHVRRHNGSSEECTCNICGKVSPNRSAMLSHQRYVHNADRVHVCSVCSKKFKKAINLKEHMATHTGEVLYKCPHCPKTFNSNANKHSHRKKCHPKEFEEARKARMQNRMAPAAAPAGASVAVVESKSSLITITTTGDADGQVETHNILVTTTTEDAEDHSAEEGFKGEELDFMLSLSPQPAAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01553461;
90% Identity: iTF_01559262;
80% Identity: -