Zkol004528.1
Basic Information
- Insect
- Zaprionus kolodkinae
- Gene Symbol
- -
- Assembly
- GCA_018901885.1
- Location
- JAEIFM010000508.1:5259279-5262666[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.2e-07 2.8e-05 24.2 1.0 1 23 65 87 65 87 0.99 2 15 0.0016 0.11 12.9 3.2 1 23 93 115 93 115 0.94 3 15 0.016 1.1 9.8 3.1 1 23 121 143 121 143 0.96 4 15 0.00086 0.058 13.7 0.1 2 23 169 190 168 190 0.97 5 15 2.3e-05 0.0016 18.7 2.3 1 23 196 218 196 218 0.98 6 15 0.012 0.84 10.1 3.0 1 23 224 246 224 246 0.98 7 15 0.33 22 5.6 3.0 1 20 335 354 335 360 0.95 8 15 0.00048 0.032 14.5 5.7 1 21 370 390 370 392 0.95 9 15 4.5e-08 3.1e-06 27.2 0.1 1 23 398 420 398 420 0.99 10 15 3.2e-05 0.0022 18.2 7.2 1 23 426 448 426 449 0.96 11 15 5.7e-07 3.9e-05 23.7 2.4 1 23 462 484 462 484 0.98 12 15 4.7e-06 0.00032 20.8 6.0 1 23 490 512 490 512 0.98 13 15 4.2e-05 0.0028 17.9 7.9 1 21 518 538 518 540 0.96 14 15 0.00024 0.016 15.5 1.8 2 23 547 568 546 568 0.97 15 15 0.00084 0.057 13.8 0.7 1 17 574 590 574 591 0.95
Sequence Information
- Coding Sequence
- ATGAGTGAATTAATCGACGTAAATTTCGTAAAAGTAAAACAGGAGCAGGAGGAGGTGCCATTTGATGAAGACATAATCTGTGATATTGATATAGGACCCATTAAAATAGAGCCTGGATCAGATGTATTGACGACGGGAGAACAGGAGAAGCAGCTCTCAGCTGCAAACAAGAAACTCAGTAGCTCCAAAACTTACCAGTGTCCACATTGTCCTCGACACTTTGAGCAAAGCGATGAGCTAGCAATCCACATGCAGATTCACAGCGATAAGCTGCTATACAAGTGCACTTACTGCCCGAATAGTTTCTCTCATAAATCAGTTTTTACCATGCACGTATACGGTCATACGGGTGAATTCCCCTTTCAGTGTACCCAATGCGAACAAAGATTCCTCAGGAACTGTGAACTGAAGAAACATGTACTTGCTCACAGTGAGGTGAAACTGCCACAGACGTGTCCACTGTGTCCAAAGAATTGCAAACATACAAAGCCAATTAAAGATCTGAAATGTCCTCAGTGTGCTCGGGGATTTACAAAGGGCTATGAACTGCAGATACATTTGCAAATCCACAGCGATAAACTACCCTATAAGTGCCCCTACTGCCCGAACAGCTTTGCACATAAACCGAATTTTATGGCTCACATTTGTGAGCACACAGGGAAGTTCCCTCACAAATGTCTACAGTGTCTGCAGGGCTTTATGAAGCGTAACGATCTCATGATGCACATGAAGACTCATGTGGAGAAGAGTCCCAGCAAATCACATGATATCCCACTTAACAGAAAGGAGCAGGCAAACGAGACCTACAGTGTTGTAGTAAAAGCCAAAAAAGATTCCGTAAAAATCAAGAACCCTGCTGTACTTGTTAAGGATATTACAAAAACAACCAAGATTAAAATTGAACCGAGGATAGAAAAAATTCAAGGAACTCAAACTTGTACTGATAAGACTGTAGTCAAAATCCAGGAGGAGGACGAAAACCCCAACAGCCGGGATGATTCCTTCAAATGTAGGACATGCAACAGACTTTTTGCAAATATAAATGAGCTGAGGCTTCATGAAAAATGCTTTACACACTCAAGGAAATACGTACAAAGCGAGCGACCGCACAAGTGTCAATACTGCTTGAAGACCTTCAGCACAATCAATAACCTGACGGTGCATATGCGCTGCCATACTGGCGAGCGTCCCTATCAATGCCCTGACTGCCCGCGCACTTTCATCCAGAACTCTGGACTACAGGTGCATATAAGGCAACATTCTGGCGAACGACCTTATAAGTGTCCCCACTGTCCACGGGCATTTGCCAATAACTCGAATTGTAAGAAACATCTGAAGACACATCACACAGAAGACTCCGCCGAATCGCATTGTGCCAATCCCTACAAATGTCCACATTGCCCAAGAACTTTTGCTCAGAACTCACATTTCATTGTGCATGTTCGCGGGCATACAGGTGAACGTCCCTATTGCTGTACATACTGCCCGAAGGTCTTCAAAGTCAACCACGATCTGAAGAAACATTTGCGTAGCCATACGGGCGAGCGTCCATTCAAGTGTCCACATTGCCCGAAAACCTTTGCTCAGAACTCGCATTTTCATGCTCACATTCGCTGCCATTCCGACGAGCGTCATTTAAAGTGTCCACACTGTCCAAGTACGTTTCTAAGGAGCTACAACCTTAAGGTTCACCTAAGCACGCATACTGGTGAACGGCCTCACAAGTGTCCCCAATGTCCCAAAGACTTTGTTCAGAATTCGCATCTTAAGTATCCAGCAATTTGGGATAGTGACCAACACGATAAAGAGAATATCTCAAATGCTTGGAGCGACATTGTAAAAGTAATGAACATTAATGAAGTTGATGAGAAGGAAGCCAAACGGAAGTGGAACAATCTATATGCAACGTTCCAATCTTGTCTGAAAAAACTTCAAAATCCTACGTCGCCAAAAAGTGGCGAAAACGCGCCGCCAAAATGTGTACTTTGGACGCACTTCAAGAAAATGCTCTTTGTGGATCCTAATCTCGAAACGGATAAATTGCTTGCCGGACATGCACAAAAAGCACTTGCAGTCGAACCTGAGGAAAACATATCGGAAATCCTTTCTACGAGCTCAGGAGATCATGTTGTGCAAGATGTTAAAATGGAATCGCCGAATTGTCGAGAAGATGCGGAGTATATGCCTATTGTTCCAATGGCAGTGTATACGCCAGCATCTTCGCGCTTCAAACAACAAGCCAACACTTCGATTGGACTCAAGCAATTGTATTCCACGCCATTGGACTCCAATGACAATTCAGATGCAATTATACAAACAGATAGGAACTATACATTTTGCAATTATATCTTATCCGAATTGAATGGTCTTTCGGATGGAAATGCAAAATCTTTGCGGCATAGATTGAATAAAACTATGTTTCAATATCTGCAGGACGCACCGCCAAGTACCGAAACGCCATGA
- Protein Sequence
- MSELIDVNFVKVKQEQEEVPFDEDIICDIDIGPIKIEPGSDVLTTGEQEKQLSAANKKLSSSKTYQCPHCPRHFEQSDELAIHMQIHSDKLLYKCTYCPNSFSHKSVFTMHVYGHTGEFPFQCTQCEQRFLRNCELKKHVLAHSEVKLPQTCPLCPKNCKHTKPIKDLKCPQCARGFTKGYELQIHLQIHSDKLPYKCPYCPNSFAHKPNFMAHICEHTGKFPHKCLQCLQGFMKRNDLMMHMKTHVEKSPSKSHDIPLNRKEQANETYSVVVKAKKDSVKIKNPAVLVKDITKTTKIKIEPRIEKIQGTQTCTDKTVVKIQEEDENPNSRDDSFKCRTCNRLFANINELRLHEKCFTHSRKYVQSERPHKCQYCLKTFSTINNLTVHMRCHTGERPYQCPDCPRTFIQNSGLQVHIRQHSGERPYKCPHCPRAFANNSNCKKHLKTHHTEDSAESHCANPYKCPHCPRTFAQNSHFIVHVRGHTGERPYCCTYCPKVFKVNHDLKKHLRSHTGERPFKCPHCPKTFAQNSHFHAHIRCHSDERHLKCPHCPSTFLRSYNLKVHLSTHTGERPHKCPQCPKDFVQNSHLKYPAIWDSDQHDKENISNAWSDIVKVMNINEVDEKEAKRKWNNLYATFQSCLKKLQNPTSPKSGENAPPKCVLWTHFKKMLFVDPNLETDKLLAGHAQKALAVEPEENISEILSTSSGDHVVQDVKMESPNCREDAEYMPIVPMAVYTPASSRFKQQANTSIGLKQLYSTPLDSNDNSDAIIQTDRNYTFCNYILSELNGLSDGNAKSLRHRLNKTMFQYLQDAPPSTETP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -