Zkol005453.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zaprionus kolodkinae
Gene Symbol
-
Assembly
GCA_018901885.1
Location
JAEIFM010000247.1:6503412-6512712[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 2.4e-05 0.0016 18.7 2.1 1 23 157 179 157 179 0.97
2 24 7.8e-06 0.00053 20.2 0.4 1 23 185 207 185 207 0.97
3 24 0.0011 0.078 13.3 0.9 1 23 213 235 213 235 0.95
4 24 1.6e-05 0.0011 19.1 3.1 1 23 241 263 241 263 0.97
5 24 3.7e-05 0.0025 18.0 4.7 1 23 269 291 269 291 0.99
6 24 6.8e-05 0.0046 17.2 5.7 1 23 297 319 297 319 0.97
7 24 3.4e-07 2.3e-05 24.5 4.3 1 23 325 347 325 347 0.98
8 24 1.2e-07 8.2e-06 25.9 2.4 1 23 353 375 353 375 0.97
9 24 7e-05 0.0048 17.2 6.7 1 23 382 404 382 404 0.97
10 24 1.6e-05 0.0011 19.2 8.4 1 23 410 432 410 432 0.97
11 24 5.5e-05 0.0037 17.5 5.1 1 23 438 460 438 460 0.97
12 24 5.7e-05 0.0038 17.5 8.7 1 23 466 488 466 488 0.97
13 24 5.5e-05 0.0037 17.5 5.1 1 23 494 516 494 516 0.97
14 24 0.00011 0.0072 16.6 9.4 1 23 522 544 522 544 0.96
15 24 7e-05 0.0048 17.2 6.7 1 23 550 572 550 572 0.97
16 24 0.00012 0.0083 16.4 6.5 1 23 578 600 578 600 0.98
17 24 1.1e-05 0.00074 19.7 4.5 1 23 606 628 606 628 0.98
18 24 7.9e-06 0.00054 20.1 8.1 1 23 634 656 634 656 0.98
19 24 6.4e-06 0.00044 20.4 7.6 1 23 662 684 662 684 0.97
20 24 7.2e-07 4.9e-05 23.4 7.7 1 23 690 712 690 712 0.98
21 24 0.00022 0.015 15.6 9.5 1 23 718 741 718 741 0.95
22 24 8e-05 0.0054 17.0 0.9 1 23 747 769 747 769 0.98
23 24 0.00087 0.059 13.7 3.4 1 23 779 801 779 801 0.97
24 24 9.9e-06 0.00067 19.8 1.6 1 23 807 830 807 830 0.96

Sequence Information

Coding Sequence
ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTATCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACCTTGGGCGGACCACCGCCAATACCAAGTAAAGGAGCCGGCGGTAACGAACATAATCATAAGGAGGACGGAAGCGGTAAACCGCCGCACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCACAGTTATTTACGTATCACGAAGTCTTTGGTAAAATCCATGGCGATGTGGTTAATCATGTGGCGGCGGTGCATGGCAGCCAATTGCCACCGCCTCACTCCGGTGGCGCTAGTCAGAGTGGAGGAAATAACAACAACAATACGTCAACAACGACGACGGGTGAGTTGCTAATGCCTAAAATGGAGGGCGGCATTCATGGCGTTGATGGTCAGTCGAGTGTTGCACTGGCGCCAGATGGCACGCCCATTGCAACTGGTACGCATGTATGCGATATTTGTGGCAAGATGTTCCAATTTCGTTATCAGCTGATTGTGCACCGTCGCTACCACAGCGAGCGTAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCGCAGGATTTAACCCGTCATGGCAAAATTCATATTGGCGGTCCCATGTTCACCTGCATTGTCTGTTTCAATGTGTTCGCAAATAATACAAGCCTGGAGCGACATATGAAGCGTCATTCAACAGACAAACCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGCTCGCATACGGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACTCGCAAGGAGCATCTAGCCAACCATATGCGCTCCCATACCAACGAGACGCCGTTCCGTTGCGAGATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGTGAGACGCCTCATCGTTGCGATTTCTGCTCTAAGACGTTCACGCGCAAGGAACACCTGTTGAATCACGTGCGCCAACACACTGGAGAGTCGCCACATCGCTGCACATACTGCCCGAAGACGTTTACACGCAAGGAGCATCTTACGAATCACATACATCAGCACACGGGTGAGACGCCGCATCGGTGCGAATTCTGTTCCAAGGCGTTTACACGCAAGGAGCATTTGGTTAATCACGTGCGCCAACACACGGGAGAGTCCCCACATCGTTGCACATACTGCTCGAAGACGTTTACCCGAAAGGAACATCTCACAAGCCACACATATACGCACACGGGTGAGACGCCGCATCGGTGCGAATTCTGTTCCAAGGCGTTTACACGCAAGGAGCATTTGGTTAATCACGTGCGCCAACACACAGGAGAATCGCCACATCGGTGCACATACTGCTCGAAGACGTTTACCCGAAAGGAGCATCTCACGAATCACTTACATCTGCACACGGGCGAGACGCCACATCGGTGTGACTTCTGCTCCAAGACGTTTACGCGCAAGGAACATCTGTTAAATCACGTGCGTCAGCACACTGGAGAGTCGCCGCATCGCTGCTCGTACTGCATGAAGACGTTTACGCGCAAGGAGCACCTGGTGAATCACATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACTCGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATACTGCACCAAGACGTTCACACGCAAGGAGCATCTCACGAATCATGTGCGCCAGCACACGGGCGATTCGCCGCATCGTTGCAGCTACTGCAAGAAGACGTTTACCCGCAAGGAGCATCTGACGAATCATGTGCGGCTCCATACGGGCGATTCTCCGCACAAATGTGAATACTGTCAGAAGACGTTTACGCGCAAGGAGCATCTCAATAATCACATGCGCCAACATTCGAGTGACAATCCCCATTGTTGCAATGTGTGCAACAAGCCGTTTACCCGCAAGGAGCATCTGATCAATCATATGTCACGCTGCCACACCGGCGATCGCCCCTTCACCTGTGAGACGTGCGGCAAATCTTTCCCACTCAAGGGCAATCTGCTATTCCATCAGCGCAGCCACACCAAGGGTCAGGAGTGTGAGCGTCCCTTTGCCTGCGAGAAGTGCCCCAAGAATTTCATATGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGTGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCACTCGGCAACGACCACGATGCATACCATCCAACAGATAACAGCGGGCGCAGCAGCGGCTGGCGCCGGTGCCGTCCAGCTAACGCCAGGCCTGGTGCCGCTGGTGACCAGTACACTCATCTCGCACAACGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCATCGCATTGATCAGTGATCCGAGTGCGTTGGCACGTGCCGCAATGCAATTGCAACATCTTCCCGGCAATGTTGAGCAGCATCCCGTAGTTTACTAA
Protein Sequence
MQHVSAASSAPSVVSAPVVTTGGGTTITLGGPPPIPSKGAGGNEHNHKEDGSGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPHSGGASQSGGNNNNNTSTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCPKTFTRKEHLTNHIHQHTGETPHRCEFCSKAFTRKEHLVNHVRQHTGESPHRCTYCSKTFTRKEHLTSHTYTHTGETPHRCEFCSKAFTRKEHLVNHVRQHTGESPHRCTYCSKTFTRKEHLTNHLHLHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLTPGLVPLVTSTLISHNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPIALISDPSALARAAMQLQHLPGNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-