Zkol012473.1
Basic Information
- Insect
- Zaprionus kolodkinae
- Gene Symbol
- -
- Assembly
- GCA_018901885.1
- Location
- JAEIFM010000068.1:3842239-3843958[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.3e-17 2.2e-13 49.6 0.0 2 45 374 417 373 417 0.95 2 3 0.05 1.2e+02 2.4 0.0 28 37 447 456 447 460 0.90 3 3 4.1e-19 9.6e-16 57.1 0.0 2 42 483 523 482 525 0.95
Sequence Information
- Coding Sequence
- ATGAATCATCTAAAATGGATGGGTCACTCATCCACAATAATGGATATTCAGCGAGTTCTACTGAGCCAGCAAAGCAACAACCAAAGCTGCGAGGTCCTGTTGGTAGCAAAAGACGGTACAAGTGTGCGCGCTCATCTCTTCGTTTTGAGTACGTGCAGCGATCTGATGCGTAATCTATTGGTGGATCTACCCGTTGGGCAGGAGGCAACTGTCATCCTGCCCGACATTCGCGGTGAGCTGCTGGAGAGCATGTTATCGTTTATTTATATGGGGGAAACTAGTCTTCCCTCGGCCCTTCTTACTGAATTTCTCGAAGCCATCAATCTTTTGGGCATTAAATCTGCCATAAGCTTCGAAACTAATCCCACATCTATGACCAACTCAAATATAAGTGGAGCAATGGCTGTTGAGGCAGCAAAGTCTATAAGCGGCTTGCAAATCGCGAATACATCTATAATGGAGGAGGAAGAGGAAGATGCTAACGTTGTGGTCGGAAAATTGGAAATGGCAAATACAGTGCTTGGTAATCCACAACAGCCTCAGGAACAGGTAGCAAGACCTTTGGAGTTCCTCGACGTATACGGTGATCAGCCAAAAATCACATATTCCATTGAGCACATGGGTGGCACAACAAGTGGAAATCAGTACATATTGACGGAGAACACAGGCACATTCACAATAACACAGTCAGCATCTTCCGTAAATAAGCTGGGAGTACCAGCTGGCACAGATGTAGTGGAGCATGTTGGTGGTGTAAATGTCGGTGTGACCGGTGAGATGCCAGATGAGGATGTGGAGGCTGATGTTACAGACGATCACGATGAATCCGAGTCGCAGTTGATCGAGGAGGAGTATGTCACATCGGCTGGCCCCTTAATAGAAATGAGCACAGATGCGGATGTTGATATGGCTGAGGAGGCAATGCATGAAGAAGATGCTGGCGAAGATGAGGATGAAGAGGAGATGTTGGATGTCAAACCACGAAAATCTCAACTGGATATGAAAATGTTAAAAACAAGAGTACGCCAGCGTTCACCCTCATCAAAAGCCTCAAAGAAGGCAATGACAAAACAACATCAACAATGTGTAGCACTCAAAAGAGAATTCAAGGATGACATAAATGACGCCCTCGATTTAGCCGCAGAAGCAGTTCTTCACGAGGGACTTAGCCTTCAAAAAGCTGCCGATCGTTTCGACATATCTAAAACTGTGCTTTGGCGACGAGTACGCTCCAATCCGGCCTATATGAGAATAAAACGGGAAAAGCCTTCGTTGTCGGAAGCTTATGAGCGTTTAAAACACGGTGATTCTTTGAAAAGCATTAGCCAAGATCTGCGTATACCTATGTCAACGTTACATCGTCACAAGGTCCGGCTGGCTGCAGAAGGTCGCCTTCCTGATTTCGTTGCTTGCCGAAGACGGGACAGCACCCCTAAGGATGAACTTCGGGACAAGCTTGCCAAAGCTGTGCACGCTTGTATTAATCAGGGCATGTCGCAGAATCATGCAGCCAACCTCTTCGAAATCCCCAAGAGCACACTGTGGCGCCATTTACAGCGCCGCGTAACAGAGGCGGAGCAGAAAGTCAAGGAAGAGCAGGAAGATGACGATGAGGAAGATGTTCTCAATTAG
- Protein Sequence
- MNHLKWMGHSSTIMDIQRVLLSQQSNNQSCEVLLVAKDGTSVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTSMTNSNISGAMAVEAAKSISGLQIANTSIMEEEEEDANVVVGKLEMANTVLGNPQQPQEQVARPLEFLDVYGDQPKITYSIEHMGGTTSGNQYILTENTGTFTITQSASSVNKLGVPAGTDVVEHVGGVNVGVTGEMPDEDVEADVTDDHDESESQLIEEEYVTSAGPLIEMSTDADVDMAEEAMHEEDAGEDEDEEEMLDVKPRKSQLDMKMLKTRVRQRSPSSKASKKAMTKQHQQCVALKREFKDDINDALDLAAEAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKHGDSLKSISQDLRIPMSTLHRHKVRLAAEGRLPDFVACRRRDSTPKDELRDKLAKAVHACINQGMSQNHAANLFEIPKSTLWRHLQRRVTEAEQKVKEEQEDDDEEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00610763;
- 90% Identity
- iTF_01552554;
- 80% Identity
- iTF_01554809;