Zind004054.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zaprionus indianus
Gene Symbol
-
Assembly
GCA_018904595.1
Location
JAEIHA010000320.1:16323753-16349345[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 1.8 1.3e+02 3.2 0.4 3 23 958 981 956 981 0.79
2 9 0.00036 0.025 14.9 2.1 1 23 987 1010 987 1010 0.97
3 9 0.015 1 9.8 2.2 1 23 1015 1038 1015 1038 0.96
4 9 0.0001 0.0073 16.6 0.7 1 23 1209 1232 1209 1232 0.96
5 9 0.0048 0.34 11.3 0.5 2 23 1241 1262 1240 1262 0.97
6 9 0.034 2.4 8.7 0.3 1 23 1269 1292 1269 1292 0.96
7 9 1.3e-05 0.00094 19.4 1.4 1 23 1298 1320 1298 1320 0.97
8 9 3.8e-06 0.00027 21.1 1.4 1 23 1325 1347 1325 1347 0.99
9 9 0.00074 0.052 13.9 4.4 1 23 1353 1375 1353 1375 0.99

Sequence Information

Coding Sequence
ATGACCCATAGCAACATGGACACTGTGCGCGAAGAGATGATCCTGTGGATGCTCAATATCTCGTGCAACGATGGTCTGCCCCAGGAGATTTGCCGACAGTGCACGGCGCAATTTATAATGGTGGCCAAGTTCCGGAGACGTTGTCTGCGTGTGCAGCAACGTTTGCAGCAGTATGCACAGCAAATAATCGAGCGTAAGGCCCGGCTAGGCGAGACGGTAGAAGAGCAGTCACAGTCACTATCCCCACCAGTGCAGCCTCAACCTCTGCCTACGCAGCTAGAGGCACAGCCAGCAAAGGATAATCTGCATAAACTGCCAAAACCAACGACGGAGCGTAAGCGTCGCCTGGTAATAACTCTTAAATCGCCACAAGCGAAGAAGGACTCGGAAGCAGAGCTTACAAAGGAAGATAGAACTGAAGAGCATGTTAAGGACGAGGAGCTGGAGAAGGAAGAAGATGGGGCGACGGCGGCTAAGACGAGACGATTTCAGTTACGAGTGCAAAACATACGCGTTACCTCTGTGCCAGCCAATGAGAATGAGACTGAGACAATGCCGAAAACACCGAGAAGTTTGTCGGCACCACTGCAGGGAAGAACTAGGAAACCAAGGACACCATCGAAGTCGCCATTTAAAACAATTCATGTGCCCTGGAGAACAAAGGCTGCACGCAAACAGCTCTCGGAATCGTGGTCTCTCTGCTCAACTGGCTCAGGTTCCTTATCTGCTGCAACGATCTCGCCAAAGCAATCGGCACGTTTGGAATCAGTGGCAACAACATCCGCCTCGTCATCCACATCATCAGGTCAAACATCACCAGAGCGTCTCAGTGACTTATCTGTAAATCCTTGTCTTGGTTTTGGCAGCGAGGGTACGCCTGATGATCGCAGAACTGGAGAGTCCGAATCGCCAGTTCCGTGTGAGAAACAGCAACAGTATCCGCCCATACGCATGTCCAACCGTTCGCACATTGTGTTGCGGCGTGGACGACGTGCCCGTACAACAACAAGCTATATACCTGTCAAGCGAACGAGACGCGTCGTAAGAAGAGCTCCAAAAGCAATTAATCAGTCAGAGGAATCCAAGGAGTTAATGGAATCCCTGCCAACAGCCAATAACGAACCAAAGCCAACAAAGTCTGATGAAATAGTGAAAGCACAATTAGAGTCCTTGTTAGGAGAGACAAGCGTTGACAATATCTCAGCAGCAACGACATCCAGTGACAATGCTGGAAGACCAATATCGAACATAGTCAATGTGTCCAGTCCTAGCTGCAGCACTACTGAGGAGCAACCGGCAAACACCTGCACAGCACAAAGCATGAGTGATAAAAGCGAAAAAGAAGTTGACGTCTCCAGTAGAAGCATTGAATCTCAGATGAATCAGTTATTCGAGCCAGTGGAAACCATACCAAATAAAGAAGAGCAACCAGAACGGATTGTCACAGCTGATCCAGTTCAAATTGAAGAACTAACCTCTTCAACAATGACTCCAGAGGTGCCCTGTGCAGAATGCGAAGTAGAGGTGGAAGTAGAAGTTAGTGCAACCCCAGACGATCAACAAGAACAGGACCAAGATCAGCATGACGAGCAGGACCTTGAGCAGGAACAGGATCAGGAGTTAATCGTTAGCATACCGTTGGAAGCGCTCGATGAGGACCTGCAGCGAAAACTTAACACCAACGAGGAGGAAGAGGAGGCATTACTGATGACTGGGCAACAAGTAGCAGCGGATCCGAAGGAGCTCATCGATACCGACGATGTGAATAATAATGCAAATGCCGAGAATTTTTGCCAGAGTGCTACAGCAGATAGCTTCAATTCTGCTGTGGCACTCGAAAGCAAAAAAATTGAAGCGGAACCAAATGGGGGCGTCAAAAAAGTGGAAGCGAAGGAAGTGAAGGGTAACGAGCAGTCAGAGGACGATGACATGGCATCACTTGAACGCTTAGCCCATGTGTCGGAGCCAACGCAGAAGAGCAAAGAATGCAGCAATGAAGCACTTTCGCAACAACGTCCACGTGCTGGGACATCGTCGATGGACTTTCTGGCAGAATTCGAGAAACATTGCGAGAAGACATTAAAACTGCAGGAGGCCAAGCAAAAGATGGAGGTGGAAATGAACGATGTGGAGACAACACTGCATGGAATACTCAATGAAATGCAAGATGAGCATCTCTATACGCCCGTTTGTACGCCAATTGATGAGTTCCTTACCCCGGCTGATTATGCCCCACTTACCGAACAGGAGCCTAGGCGGGAAGAGGATGAGCTACAGCAGAAGCAACAACAGCAGCAGCAGAACAGAAAAGAAGGCAACATGTTCGATGTTAGGCTTTCGAATGGCAGCAACAAGTTGCAATTTATTCAGATGCCAGCGCAGGATACGTTGTGGCAGACGCAGACGCAGGCTAGTCAACAGTCTCAGACTCATCACTTGCAATGGTCTGCTGTAGGTGGACTGGAATCCATGAAGACGATGCCCGCTACTACCAGCATGGAGAGTGTGGATAACAACACAACGACAACAACGTATTATATTAACGCCAGTGATCTCTACCAGACGGGACAGCCAACAGTTATGGCCGGCGAAAGCTATGCTCTGCTCGATACCAATGAGAACTATATGTTAGAGCAACAGCAGTCCGTGCTGCAATTGTCTCAGCAGCAGCCGATTATGATACTCATACAGCAGCCAGAGATGCCACAACCGGTGGCATCGGCAAGCAATCCGCAACAGGCGCCGTTGCATATCACTTATGCGCCTCCATTGGGCAACGAATTGCCAGGGTTCCAACAGCTGCAGCAGCAACTGGCACTGCCCGCCAATACTGTGGCCCCACCCCCACGGGGCAGACCGCCAATGCTCAAGTGTCGCTTTTGCCAGAATGGACCACGATTCTCGAGCAGCTATGAATATAGTCGTCATATCATCGAATTGCATCCGGCCGTGGCACCTTTTAATTGTCCGCACTGCCCGCAATCCTTTTCGGGTCGCAGCAAACGCAATCAACACATTCTAACCCAGCATGTCCTGCAGCAATTCCACTGTGGGCAGTGCTCGCAAATGTTTCCCTCTCAACGTTCGCTTGATCTGCATTTGCAGCGTTTTCATACGCCCCTCCTGGTGGACTCAGTCAAGAGCGCAGGTGCTGCTACTGGCGTTCGTTTAGAAGAGGTGCAACTGCAAATGGCCACTACTGAGAAACAGCAACAACATCAGATGCAGGAGCCAAAGCAATTGCAGCAAAGATCTCCGCATATGCCTGCTCTTGATCAAACCGTGCCTGTAAACTCTTCACAGCCACGCAGGACGCGCATACTTTGCTGCCCCGACTGCGAGGACTGTTCATCTGCCAATGGGCATCATCATACCGGTCCTCGAATTGGGCAGCAGCAGTATGGAGAGTCAGCCTGCAACTTGCAGCCACCGCCGACTGCACTGACGCCTCCATCGACCATTGGATCGCTGCCTTCACCGCAACCGCTGTGCAGCACTCCGCACATAACGCTGCCATCGCCGGAGCAATCAGAGCCAGATTCAACAACAGCAACATTGCGACAATTCCGCAAACGTTGTACGAGTGGAACATCGCTTCTGCAAATGGGTAAATTGCGTGGCAGTCATCAGTGTGTCGTCTGCGACAAGGGATTCACAAACATCATTTCACTACGCAAGCATCAGCAGTTGGCACACGATTCGCAGACTACCATGCCGTGGGTATGTTCGATCTGCAAGCGGGGCTATAGAAAACGAATCGACATGGATAACCATATGAAGTCGCACGAGCCCAAAGGGCGGCCCTATGAGTGCAACGAGTGTTGGGTGAGATTTCCGGAATTCAAGCAGTTGGCCATGCACAAGTTTACCGTCCATGAACTGATCAAGCCGCATACCTGTGATGAATGTGGTAAACAATTTGGTACGGAGAGCGCCTTGAAGACGCACATTAAGTTTCACGGTGAACGCGGATTCCAGTGTGAAGAATGCGACGAGACATTCGCAACTATCAAAGAATTCCGCAAACATCGACGAACTCATAACAGCGATCAGTTTTACAAGTGTAAAGACTGTCCGCGCACATTTCTGCATTTTACGAGCTATCGTGCACATATGAACACACACCTGCCACTGGGAGTATTCCTCAACGATAAACATGCTACGCCGACGGTAAACAGCAAATTGGAGAATCCGGCGACACCTGTTACAGTAACTACAGTAGTCAACGAGGATTCATTGCCAATGACACCACTTAGCAACAGCGTCTGTGGCAGTATCATCAGTGAGGATTGCCCGGGATCGGTGGAATTGGTGGAAAGTAGCATAGCACCATCGATGGACATGATTGCCGATACAACATAA
Protein Sequence
MTHSNMDTVREEMILWMLNISCNDGLPQEICRQCTAQFIMVAKFRRRCLRVQQRLQQYAQQIIERKARLGETVEEQSQSLSPPVQPQPLPTQLEAQPAKDNLHKLPKPTTERKRRLVITLKSPQAKKDSEAELTKEDRTEEHVKDEELEKEEDGATAAKTRRFQLRVQNIRVTSVPANENETETMPKTPRSLSAPLQGRTRKPRTPSKSPFKTIHVPWRTKAARKQLSESWSLCSTGSGSLSAATISPKQSARLESVATTSASSSTSSGQTSPERLSDLSVNPCLGFGSEGTPDDRRTGESESPVPCEKQQQYPPIRMSNRSHIVLRRGRRARTTTSYIPVKRTRRVVRRAPKAINQSEESKELMESLPTANNEPKPTKSDEIVKAQLESLLGETSVDNISAATTSSDNAGRPISNIVNVSSPSCSTTEEQPANTCTAQSMSDKSEKEVDVSSRSIESQMNQLFEPVETIPNKEEQPERIVTADPVQIEELTSSTMTPEVPCAECEVEVEVEVSATPDDQQEQDQDQHDEQDLEQEQDQELIVSIPLEALDEDLQRKLNTNEEEEEALLMTGQQVAADPKELIDTDDVNNNANAENFCQSATADSFNSAVALESKKIEAEPNGGVKKVEAKEVKGNEQSEDDDMASLERLAHVSEPTQKSKECSNEALSQQRPRAGTSSMDFLAEFEKHCEKTLKLQEAKQKMEVEMNDVETTLHGILNEMQDEHLYTPVCTPIDEFLTPADYAPLTEQEPRREEDELQQKQQQQQQNRKEGNMFDVRLSNGSNKLQFIQMPAQDTLWQTQTQASQQSQTHHLQWSAVGGLESMKTMPATTSMESVDNNTTTTTYYINASDLYQTGQPTVMAGESYALLDTNENYMLEQQQSVLQLSQQQPIMILIQQPEMPQPVASASNPQQAPLHITYAPPLGNELPGFQQLQQQLALPANTVAPPPRGRPPMLKCRFCQNGPRFSSSYEYSRHIIELHPAVAPFNCPHCPQSFSGRSKRNQHILTQHVLQQFHCGQCSQMFPSQRSLDLHLQRFHTPLLVDSVKSAGAATGVRLEEVQLQMATTEKQQQHQMQEPKQLQQRSPHMPALDQTVPVNSSQPRRTRILCCPDCEDCSSANGHHHTGPRIGQQQYGESACNLQPPPTALTPPSTIGSLPSPQPLCSTPHITLPSPEQSEPDSTTATLRQFRKRCTSGTSLLQMGKLRGSHQCVVCDKGFTNIISLRKHQQLAHDSQTTMPWVCSICKRGYRKRIDMDNHMKSHEPKGRPYECNECWVRFPEFKQLAMHKFTVHELIKPHTCDECGKQFGTESALKTHIKFHGERGFQCEECDETFATIKEFRKHRRTHNSDQFYKCKDCPRTFLHFTSYRAHMNTHLPLGVFLNDKHATPTVNSKLENPATPVTVTTVVNEDSLPMTPLSNSVCGSIISEDCPGSVELVESSIAPSMDMIADTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01559980;
90% Identity
-
80% Identity
-