Basic Information

Insect: Zaprionus indianus
Gene Symbol: -
Assembly: GCA_018904595.1
Location: JAEIHA010000145.1:2804040-2805760[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.8e-05 0.002 18.4 2.1 1 23 100 122 100 122 0.97

2 11 5.7e-06 0.0004 20.6 4.5 1 23 128 151 128 151 0.96

3 11 1.9e-05 0.0014 18.9 0.6 1 23 157 179 157 179 0.97

4 11 1.4e-05 0.001 19.3 0.4 1 23 185 207 185 208 0.95

5 11 1.4e-06 0.0001 22.5 0.9 1 23 215 237 215 237 0.97

6 11 0.0042 0.3 11.5 1.0 1 23 243 266 243 267 0.95

7 11 0.0023 0.16 12.4 0.3 1 23 272 294 272 294 0.97

8 11 1.9e-05 0.0013 18.9 2.7 1 23 300 322 300 322 0.98

9 11 1.7e-05 0.0012 19.0 4.7 1 23 328 350 328 350 0.99

10 11 0.0022 0.15 12.4 1.3 1 23 356 381 356 381 0.95

11 11 0.002 0.14 12.6 0.8 1 19 387 405 387 407 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.8e-05	0.002	18.4	2.1	1	23	100	122	100	122	0.97
2	11	5.7e-06	0.0004	20.6	4.5	1	23	128	151	128	151	0.96
3	11	1.9e-05	0.0014	18.9	0.6	1	23	157	179	157	179	0.97
4	11	1.4e-05	0.001	19.3	0.4	1	23	185	207	185	208	0.95
5	11	1.4e-06	0.0001	22.5	0.9	1	23	215	237	215	237	0.97
6	11	0.0042	0.3	11.5	1.0	1	23	243	266	243	267	0.95
7	11	0.0023	0.16	12.4	0.3	1	23	272	294	272	294	0.97
8	11	1.9e-05	0.0013	18.9	2.7	1	23	300	322	300	322	0.98
9	11	1.7e-05	0.0012	19.0	4.7	1	23	328	350	328	350	0.99
10	11	0.0022	0.15	12.4	1.3	1	23	356	381	356	381	0.95
11	11	0.002	0.14	12.6	0.8	1	19	387	405	387	407	0.96

Sequence Information

Coding Sequence: ATGGTACGCAGTCGTCGCAGTTTATCCAAGGAGGATGCCGTCTCGCTGCTCACGGACAGTGGCATTTCGCTGTCATCGCCGCCGGCGGCACGCGAATCTTCGCCCACATCTGCCACGCCCATTAAACGTCGCAAGAGCAGTTTGAATAGTTTGCAGGATTTGTATGTGGATGCTGAACAGGAGGATGCCGAACAAGATTCCACCGATGCAGACGGAGATGCCGATGCTGATTATGTTCAACCGGTGCCAAAGCGATCGCCACGCAAAGCGGAAGCAGCAGCAGCACGTCGCAAGCAGCACGTGTGCAGTCATTGTTCCAAGGAATTTGGCGGCAAGACCGATCTCGAGCGGCACATGCTCATCCATTCCGATGAGCGTCCGCACAAGTGCAGTGAATGCGGCAAATGCTATCGCCAGGCGGTCAATCTAAAGAATCACAAGACGACGGCGCACGAGCACAAGAAACAGTTCGCCTGCACACAGTGCCCCAAATCGTTTGCACTCAAGGAACGCCTCAGGCTGCACATGCGTCTGCATTCGGGTGAGAAGCCATATCCATGTGCGCTCTGTGATAAGCGCTTCGCACGCGGTGGTCAGTTGCAACAGCACATGGTGTCGCATCACAAGACAAGCATACAGCAATTCAACTGCACCAAATGCTCGGCCAGCTTCTCCACCAATGCCAATCTGCGCGTGCATATGGAACGCCACGAACAGGGTATGGAGCACAGGTGCTCCATCTGTGAGAATCAGTTTGCAAATGAATTAGCGCTGCGCGCCCACATCAATCAGGAGCACCACAAGCTGAGCCGTTTCGATTGTGAAATATGCCACAAAACCATCGAACCAGATGAGGATCTGGCCACGCACATGCAGAAACATGCGGCGGTAAAGACTCACGTCTGCGAGGTGTGCAACTCGTACTTTACACAGAAGTCCCAATACAATGTGCACATGCGCATGCACACCGGAGAGCGACCGTATCAGTGTCGGATCTGTCATCAAACCTTCGCCCACTCGAGCGTGCTGAAGCTGCACATACGCAAGCACACGGGCGAGAAACCCTTTCGCTGTCAACTGTGCACGGATGAGGTGGCCTTCTCGCAGTTGGCGCATCTGAAGAACCACATGAAGAAGATCCACAAGCAGCAAAAGCCCTACATGTGCCACGGTTGCCATGAGTTCTTCAAGATCAAAGTGGAACTGCAGGCGCACAGCGAGCAGTGTGCCAAGTGTCAGAAAACAGAGGAGGAGGAGGAGCAGCGCAACGAGAGTCAGGCAGAAGATGCCACTGCGCTGTCCAGTTTACGCTTCAACATGGCCGTGGTGCTTAAGAAAATCAGTTCGGCACAGAAACTACGTCAGTTGGGCTACGAGAAGCGTCTGATTGATAATGTTATCATTGCCTCCCTGAAGCTAGCACAGCGCCCCACGCATGACGATGCCACACTGACACCACTCGCCCGACTTCGTTTGAATGTGGAGGAGTTTCTCAAGTGGATTGTGCCGGCACCCACCATGCAAAAGTTTCGCGAGGAGCTGCTCTCCATTGACACAATACTCGACAAGATCGCTACGATGTACATGAAGCAGAAGTAG
Protein Sequence: MVRSRRSLSKEDAVSLLTDSGISLSSPPAARESSPTSATPIKRRKSSLNSLQDLYVDAEQEDAEQDSTDADGDADADYVQPVPKRSPRKAEAAAARRKQHVCSHCSKEFGGKTDLERHMLIHSDERPHKCSECGKCYRQAVNLKNHKTTAHEHKKQFACTQCPKSFALKERLRLHMRLHSGEKPYPCALCDKRFARGGQLQQHMVSHHKTSIQQFNCTKCSASFSTNANLRVHMERHEQGMEHRCSICENQFANELALRAHINQEHHKLSRFDCEICHKTIEPDEDLATHMQKHAAVKTHVCEVCNSYFTQKSQYNVHMRMHTGERPYQCRICHQTFAHSSVLKLHIRKHTGEKPFRCQLCTDEVAFSQLAHLKNHMKKIHKQQKPYMCHGCHEFFKIKVELQAHSEQCAKCQKTEEEEEQRNESQAEDATALSSLRFNMAVVLKKISSAQKLRQLGYEKRLIDNVIIASLKLAQRPTHDDATLTPLARLRLNVEEFLKWIVPAPTMQKFREELLSIDTILDKIATMYMKQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01324297;
90% Identity: iTF_00534722;
80% Identity: iTF_01552593;