Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.7e-12 3.9e-09 36.0 0.0 1 41 76 117 76 120 0.90

2 4 1.3e-14 3e-11 42.7 0.1 2 39 131 168 130 171 0.94

3 4 2.2e-18 5.2e-15 54.8 0.0 1 45 185 230 185 230 0.98

4 4 1.4e-20 3.3e-17 61.8 0.0 1 43 237 280 237 282 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.7e-12	3.9e-09	36.0	0.0	1	41	76	117	76	120	0.90
2	4	1.3e-14	3e-11	42.7	0.1	2	39	131	168	130	171	0.94
3	4	2.2e-18	5.2e-15	54.8	0.0	1	45	185	230	185	230	0.98
4	4	1.4e-20	3.3e-17	61.8	0.0	1	43	237	280	237	282	0.96

Coding Sequence: ATGGAGATTGATCCGAGCCAGATCAAACACGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACTGGGCATATGGATATGTACAACTCGGATACGAGCGAGGATTCGATGATGATTGCCAACGGTTCGCCGCACGATCAAAATGAACCGCACTATACGAATTTGGATCAGCAACACGGCGGCCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCCTCGACAACATTATGGCAACGTGCACATCGTCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGTACCAAATCATGGAATGAGGATGCCTTACAGAGTGCACTGGAGGCATTGAGATCGGGCCAGATATCAGCTAATAAAGCATCCAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATAGCGCGTCGAGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGTGCTGGCAATACGTCGGTGCAAAAAGCGAGTGCTGAGTTTGGCATACCAACAGGAACACTCTATGGACGCTGCAAACGGGAGGGCATCGAACTTTCACGTTCGAATCCAACACCTTGGTCCGAAGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTTGGCCAGATGTCCATCAATCAGGCGGCCATACACTATAACCTGCCCTACAGTTCGCTCTACGGGCGCTTCAAGCGCGGCAAATACGATGTGGCCAACACCAGCGGAGTCTCGTTGCTTAACGCTTCGGGCAACACAACCGGCAGCATTGAGATTATTGAACATAGTCAGGAGAATTCGGTAGGTTAA
Protein Sequence: MEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQSALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGVSLLNASGNTTGSIEIIEHSQENSVG

Sequence clustering based on sequence similarity using MMseqs2