Zghe002710.1
Basic Information
- Insect
- Zaprionus ghesquierei
- Gene Symbol
- L
- Assembly
- GCA_018904095.1
- Location
- JAEIGP010000662.1:1193592-1202644[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.8e-06 0.00067 19.8 2.9 1 23 171 193 171 193 0.98 2 17 0.15 10 6.7 7.3 1 23 199 221 199 221 0.97 3 17 1.6e-07 1.1e-05 25.4 3.2 1 23 227 249 227 249 0.99 4 17 1.2e-05 0.00082 19.6 0.4 1 23 255 277 255 277 0.99 5 17 0.24 16 6.0 0.1 2 23 360 386 359 386 0.86 6 17 0.0054 0.37 11.2 1.1 2 23 413 435 412 435 0.95 7 17 0.059 4.1 7.9 0.7 1 23 519 541 519 541 0.97 8 17 0.0033 0.23 11.8 0.1 2 23 549 570 548 570 0.92 9 17 0.00035 0.024 14.9 0.1 1 23 578 603 578 603 0.93 10 17 4.9 3.4e+02 1.9 1.6 2 23 639 661 638 661 0.95 11 17 0.0024 0.17 12.3 1.1 1 23 706 729 706 729 0.97 12 17 0.0016 0.11 12.9 1.8 2 23 926 948 925 948 0.96 13 17 0.11 7.5 7.1 0.1 1 23 954 976 954 976 0.92 14 17 0.77 53 4.4 1.8 2 23 984 1005 983 1005 0.96 15 17 0.71 49 4.5 0.5 2 23 1106 1127 1106 1127 0.94 16 17 0.022 1.5 9.3 0.0 1 23 1137 1159 1137 1159 0.96 17 17 0.00021 0.015 15.6 1.2 1 23 1164 1186 1164 1186 0.97
Sequence Information
- Coding Sequence
- ATGATGGCTCTAAAGATGTTGTATCGCGGTCCCAGTTCGCGTTTGGAGAATTTAATTGAGAAGATTCAGGCAACGAAGGAGATTACGAATAACGACATGTACAGCACGCACACCTCGTCCAGTTACTCGCCCAGCATCTCGGACGGCACATTGACGCCCAACTCACAGCAAACACTTGCACAGCCGCAGGGCGAAGATGGCGGCGCCACGGAGGAGTCCAAACTGAATGGCGACACGGCCACAACTGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGCTGAAAATTGCCAACAAGTTGCGCAAAATCAATAAGGAAGCCAAGCAAGGAGGAGGCGGCAGCACAGCAGGAGCAGGAGCAGGAGCTGGCGCAGGCATAACCGGAGCAGGAGCTGGTGCCACGAGCAAGTTTGATAAGTTGACAGGCGAGGGCATTAAGAGTCGAGGCGACGGCTCCTATCAGTGTCAGTTCTGTGATAAGTCATTTCCGCGCCTTGGTTACTTGAAGCATCACGTTCAGAGCCACGCCGAGCACTTGCCCTTCAAGTGCGAATACTGCTCCAAGCTGTTCAAGCACAAACGCTCCAGGGATCGCCATAAGAAGCTGCACACCAACGAGAGGAACTACAAGTGTCCACACTGCGAGGCCGCTTTCTCCAGAAGTGATCACCTGAAGATCCACATGAAGACACACGACATCCAGAAGCCCTTCCAGTGCAGCATGTGCAATCGGGGCTACAACACGGCCGCCGCTCTCACCTCGCACATGCAGAAGCACAAGAAGAATGCAGCCATTTTGGCAGCAGGTGGCAACCCTAATGCCCTGAACTACAGTCCAAGATCAACGGGTTCCGCTTCGATCTCCTCGAATGGCAGCCTGCACAAGCGACGCTATGCTTTGGCCCTCGCATCCGACAGCAGTCCAAGTCGTCTGGAATTCCCGGCGAAGCGAGCACGTGCAGCCAGCACAGCGATTCCAACCACACCCACGCCCACATTGACAGCAACGCCCACGCCTACGCTACGCTGCAGCTACTGCCCCAAGGCGACGCCGGCGGAGTTTGCCAGCCTGGAGCAGCTCAATGCGCATCTGCAAGTGGCACATGAGACGCAGCAGGCGAGGATTGCCGGGGCGGAGGCATCGAGTGCAGAGCAGACGCCAGCGGGCAATGGCTTCCAGCTGAGCTGCGAATACTGCACCATGAGATTCCACAACATCGCAGGGCTGTTCCAGCACATGCGGGCAACGCATCTGGATCGCCTCAGTAGTCCCAACTCGTACTATGAACACTTCAATCGTCTGGCCACCGCGGGCACCTTTAGTCCACGACTGGCGCTGGAGTTGCCCAAGCTGAAGCAGGATTTGGGCAGTCCGCAGCGCACGGAGCAGGATGTGCCCACCGATTTGAGCAGCAACAAGCGGCGCACGTTGACGCCACCAGGAGGTGGAGGGGCAGCGGGCACAGCTGCTCCGGCGGCTCCACCCGCGCCTCCCGGCATCTTCTTCTGCAATCAGTGCAACGCGGGTCTGCCCGACTTCGAGAGCTTTCGCAATCATCTAAAGAGTCACATAGCCGAGGGCATGCAGTTGGTCTGCCCGCACTGTGGCCTCAGTCTGCCCGAGCAGAGCGAATTCGAACGCCATGTGGTTGCCCATTTCCTGATACCCGGCAGCGAATACAACTGCAGCGTTGCCAGCTGTGGCAAAGCCTTTGCCAAGGCCGACGAACTGCAGCAGCATTTGAACCAGGAGCATGTCCTGACGCTGCTCAAGTGTGGCATCTGTGCGGAGCTCTGCGAGAATCGCATGGCCATGCAGCTGCATTTGGCCTGCACGCATAGCCAGGAGACGAAGCTGTTGCGCTGCAGCGCCTGCTTGGAACTGTTTCGCAACGACACGGATTTCCATGTGCATGTCAAGACGCGGCATCAGTTAGCCGGCACACCAGGCACGCCCACAGTGACCACGCCCACGGCCAGCACATTGCAGTGCATGTTTTGTCGCGCCGTCTGCTCTTCGGAGCTGGAGATGCATTTCCATTTGGCGGCACATGCGCGACAATTTCGCTGCCCTTCGTGTCCGGAAACCTTCCATGTGGAGTTCCTGTTGGATCGACACATGCAGAGTCAGCACGGCCAGGAGCAGAAGGAGCAGCCACCGCCGCACAGCAGCAGCAGCGCCGGCTCGCCGCGCAGCAGCATGGGCAGCCTCTATGTGAATGCTTTGCTGCCGCCGCTGGCTGCTGCAGCCGCCGCCGCTGCCGCCGCGACCAACAACAACAGCAGCCTGCACATTGACTACAATCAGGCCTTCAAGGGATTGTTCGGAGGAGCAGCGGGAGCAGGAGCAGGGGGAGCTGGAGGAGGAGCAGGCGCAGCTGCAGCCGGCGGCAAATTCTACAGTCCTCTGCAGGTGGACACCAGCGCGTTGAAGCCACAGCAGACACCACATCCCGCCTTGATGTACGGGCTAAGTCAGCGCTACCTCATGGAGATGTATGCAGCGAAGGCTACGTCACCCGCAGCAGCTGCAGCTCCGCCGCCGCCCGCCGAGTTGCCAGCGCCGCCGGCTACAGCTGCAGGAGCAGCAGGAAATGGAGGCACTGGTGGAGCCTCTACCCAACTCAGCTGCGGCATGTGCGAGCGTCAGGATCTGCGCAGCGAGGCGGAGCTGCATTCGCATCGCAAACTCGCACATAACCTCAAAACGGGCGTCAGTTTGCGCTGTGCCTACTGCTCCGGCAACTTCAAGTCACGCGCGGAACTGGAGCAGCACATGAAGAGCTGCCACAATTCCAGTGGCAAGCACAAGTGTCTCATTTGCGACGAGATCTTTCCCTCACCCGCCATACTGGCGGAGCACAAGCTGCAGCACTCCAAGGTGGGACAGTCGGGCAAGTGTGCGCACTGCGGACTGCAGCTGGAGCATGTGGCCGCCTTCCGTGCGCATCTCTGCGAGCACGGAGGCGATGGCAGTCTGCCCCTGGCCTGCATCTGTTGCCGCCAGACGCTGCACTCGGAGTTCGAGCTGAGTCTGCATGCCAAGTTCCACACCAAATCCCCGACGGGTGGTGGCAGCCTGCAGGAACCCGTCTGTGCGCTCTGCCTGGAGCCGCTGCCGGGTGCGGGTGAGACCGCTAAGCTGTGCGAGAAGTGTTGCAGGAAACACAATTTGAATGGCAAGCGCAACAAGGAGGCAGTTGCTCCGCCTTCCAATGCCAGCGTAGGCAATGCCAACTCGCAGTCCAGCTACCTGGAGAATCGCTGTAATCTCTGCAAGATGATCCTGCCACATGCACAGAAGCTGCAGGAGCATCTGGTGGAGCACACCTTTGCGGGCACCGAGCAACGTGGCTTCAATTGCTACATCTGCTCCGCCGTCTTTACGGCGCCCGGTGGTCTGCTTAACCACATAGCCGAGCACGGAGCGAGGCCCTACGATTGCAATCTGTGCCCGGAGAAGTTTTACTTCCGCGCAGAGCTGGAGCATCATCAGCGCGCGCATGAGCTGAGGCCTGCGGTGACGGCAGCAGCTGCTCCTGCTCCTCCTCCTGCTCCGCCTGTGCTTCTGGCCAAGCAGGAGCAGCTTAGCTCACCGCTGGCACCCAGTCCCAGTCATGTTAAGCAGGAGCTCTACGAGTCGGAGACAGCTGGAGGCTCCCCTTCCCAGGTAGAACGTGAGCGGGAGCGAGAGGACGATGCTGCTCCGCCCACCGAGGAGGAGGAGTACATTGAGGTGGAGCAGATGCCTCACGAGACACGCTCCGGCGAGTTGCTGCCCTCCAGTCACACCGAACGCTCCAGCAGCAGCGCCTGA
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEITNNDMYSTHTSSSYSPSISDGTLTPNSQQTLAQPQGEDGGATEESKLNGDTATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXALKIANKLRKINKEAKQGGGGSTAGAGAGAGAGITGAGAGATSKFDKLTGEGIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCSKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLHKRRYALALASDSSPSRLEFPAKRARAASTAIPTTPTPTLTATPTPTLRCSYCPKATPAEFASLEQLNAHLQVAHETQQARIAGAEASSAEQTPAGNGFQLSCEYCTMRFHNIAGLFQHMRATHLDRLSSPNSYYEHFNRLATAGTFSPRLALELPKLKQDLGSPQRTEQDVPTDLSSNKRRTLTPPGGGGAAGTAAPAAPPAPPGIFFCNQCNAGLPDFESFRNHLKSHIAEGMQLVCPHCGLSLPEQSEFERHVVAHFLIPGSEYNCSVASCGKAFAKADELQQHLNQEHVLTLLKCGICAELCENRMAMQLHLACTHSQETKLLRCSACLELFRNDTDFHVHVKTRHQLAGTPGTPTVTTPTASTLQCMFCRAVCSSELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGQEQKEQPPPHSSSSAGSPRSSMGSLYVNALLPPLAAAAAAAAAATNNNSSLHIDYNQAFKGLFGGAAGAGAGGAGGGAGAAAAGGKFYSPLQVDTSALKPQQTPHPALMYGLSQRYLMEMYAAKATSPAAAAAPPPPAELPAPPATAAGAAGNGGTGGASTQLSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNFKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGLQLEHVAAFRAHLCEHGGDGSLPLACICCRQTLHSEFELSLHAKFHTKSPTGGGSLQEPVCALCLEPLPGAGETAKLCEKCCRKHNLNGKRNKEAVAPPSNASVGNANSQSSYLENRCNLCKMILPHAQKLQEHLVEHTFAGTEQRGFNCYICSAVFTAPGGLLNHIAEHGARPYDCNLCPEKFYFRAELEHHQRAHELRPAVTAAAAPAPPPAPPVLLAKQEQLSSPLAPSPSHVKQELYESETAGGSPSQVEREREREDDAAPPTEEEEYIEVEQMPHETRSGELLPSSHTERSSSSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01559205;
- 90% Identity
- -
- 80% Identity
- -