Zdav003938.1
Basic Information
- Insect
- Zaprionus davidi
- Gene Symbol
- RREB1
- Assembly
- GCA_018903715.1
- Location
- JAEIGL010000001.1:21108237-21120996[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.015 1 9.8 0.8 1 21 109 129 109 131 0.93 2 11 0.0013 0.093 13.1 0.1 1 20 141 160 141 162 0.95 3 11 6.8 4.7e+02 1.4 0.0 2 23 226 252 225 252 0.82 4 11 0.15 11 6.6 1.8 2 20 258 276 258 278 0.93 5 11 0.0037 0.26 11.7 0.1 1 23 371 393 371 393 0.97 6 11 5.1e-06 0.00036 20.7 0.7 1 23 403 425 403 425 0.99 7 11 0.00034 0.024 14.9 2.0 1 23 431 454 431 454 0.97 8 11 3.6e-05 0.0025 18.0 0.3 2 23 721 742 720 742 0.97 9 11 0.06 4.2 7.9 6.3 1 23 748 771 748 771 0.97 10 11 0.0035 0.24 11.8 0.5 3 23 874 894 872 894 0.96 11 11 0.00058 0.041 14.2 4.8 1 23 900 922 900 922 0.99
Sequence Information
- Coding Sequence
- ATGATGCGTGCGAGCGAACGAGATAGAGCAAGCGCAAGCGGCGATGCGAGTTCGTTGCGCAAGAAGTTCCGCCTGAATCGCAGCAATGTCGCTGGCGAATTATCCGAATCGGGCTTTGTCGATGGCAGCGCCAACAGCGGTTTCCTGCTCAGCAACAGCAACAGCAGCGCTGCAGTCGCTGCGCAGTCAGCATCAGCATCGGCGTCGTCAGCTCTGCTGCAGGCTTCGTCGAGCAGCTCGGGCGGCTCATCGCCACAACAGGGCGCTGGGCTGTGCCTGTCGAGCGCCGAGTCTGGCATCGGAGCTGGGGAGGAGCACATGAAGTATCTGTGCCCCATCTGCGAGGTCGTCTCGGCCACCCCACACGAGTTCACCAACCACATAAGGTGCCACAACTATGCGAACGGCGACACCGAGAACTTCACCTGCCGCATCTGCTCGAAGGTTCTCTCATCAGCCTCATCGCTGGACAGGCACAGGGAGGAGCGTGAGGGTGAGGAGGATGAGCACATTACCAGCACACCCGATGTGGCAACGCTGCTTGCCTCGGGCAACACGACACCCGAGCACGATCACGAGCACGAGCACGACGATCACGACTCCGCCGCCTCCCACTCACTGGCCTCGACGCCCTCGCCCACACCTCCGCCCCCCGCTGCTGCCGCCGCCTGCCTGAGCTGCCCCGTCTGCCCTGCCCACTTGGTCGAGCCCTTTGAGACGTTGCCCGCACTGTGGCAGCATCTGGATGCAGAGCACGCCGACATACCCGCCAAGTGCCGCGACTGCGAGGTGATCTTCGCCAGCCATCGCCAGCTGCAGGTGCACAGCTGTCGCCGTCGCCAACTGCTGCCGCCACTGCTGGGCAACACTGTGGCTGCCTCCCAGCTGCCTTCGCCCATCAAGCACGAGCCGATGGAGCGTGGGGAACCCTCGCGGGATCTGGCTGACATACAGAGCATACTGAACATGACCAGCTCCAGCTGCACATCGAGTTTCCTGCGCAACTTCGAGCAGTCGGTGAACACGCCCTGCTCCAGCCGGGACGGGGACGGGGAGGAGGCGCAGGATGCCTTCACCAGCGAGTTCCGTCGCATGAAGCTGCGCGGCGAGTTCCCCTGCAAGCTCTGCTCGGCCGTCTTTCCCAATCTGCGCGCCCTCAAGGGCCACAATCGAGTGCATCTGGCTGCGGTGGGTGCAGCGGGTCCCTTCCGCTGCAACATGTGTCCCTATGCCGTGTGCGACAAGGCGGCGCTGGTGCGTCACATGCGCACCCACAATGGAGATCGGCCCTATGAGTGCGCTGTGTGCAACTACGCCTTCACCACGAAGGCCAACTGTGAGCGGCATCTGCGCAATCGACATGGCAAGACCAGCAGGGACGAGGTGAAGCGGGCGATCATCTACCATCCGGCGGAGGATGCCTCCTCGCAGGAGCAGGAGCAGCACAAGGCTGGCACAGATCTGGATCTGAGCTATCGCTCGCTGACGCCCCCCCCGCCCAAGCTGATCATAGACGAGGACGATGAGGATGATGAGTTCGATGAGCTGGACGAGGAGGATGAGGAGGAGGAAATGGAGCGAGAGTTGGAAGAGGAGCAACAGCAGCAGCAGCAGCAGCAGGAAGAGGAGGAGCAGCAGCAGCAGCAGCAGGAGAGGGAGAGGGAGAGGGAGCCACTGCCACGCAGCTCCACGCCCATTAAGCTGGCCAAGCAGGTGGCTGACACCATCTTGGAGCAGGCCATCAAGGCAGGCGCAGCAGCAGCACCCGCAGACTCGACTGCTGCCCCCTCCTCTGCCACTGCCCCCACAGCCATGAAGTCGATGATTGCACAGGCAGATGCTGTGGCCAAGTCCCTCAAGGATGTGGCCAGCTCCCCCTTCAAGGATGACTCGCAGGATCTGGTGCCAGTGGCCAAGTTGGTGGACAATGCCACCAGCAATCAGTCGATGTCCTCGTTCAACAATTACTTTCGTCCCAGCGATGTGGTCAACCACATGGAGCAGAGCGACGAGGAGGGACTAGTCGCCTCGGGCAGTGCCAGCGAGAGCAACAACTCGGGCACTGAGGATGTGGCTGCCTCGGCCACAGGCGCCAATGGTGGCTCCTCCTCCAGTGATACGAAGAAGAAGTCCGCCTACAGCCTGGCACCCAATCGGGTTAGTTGCCCCTACTGCCAGCGCATGTTCCCCTGGAGCAGCTCGCTGCGGCGTCACATACTCACGCACACCGGACAGAAGCCCTTCAAGTGCTCCCACTGTCCGCTGCTGTTCACCACCAAGTCCAACTGCGATCGGCATCTGCTGCGCAAGCACGGCAACGTCGAGTCCGCCATGTCCGTCTATGTGCCGGCCGAGGATGTGCGTGAGCCCATTCCGGTGCCCAAGTCCGTGGAGGAGATCGAGCTGGAGGAGCAGCGTCGGCGACGTCGTGCCCTCGAGGAGGAGCGTGAGCGGGAGCGGGAGCGTGAGCGAGAACTGGAGCGTGAGCGTGAGCTGGAACTGGAGCGAGAGCCGCCTCCCTCCTCCTCTGCCCACTCGGATGAGGAGGGTGCTCCACTGCGGGGTGCTGGCGCGGGCGCAGGGGGCAAGTACCCGGACTATAGCAACCGCAAGGTGATCTGCGCCTTCTGCGTGCGTCGCTTCTGGTCCACGGAGGATCTGCGGCGCCACATGCGCACCCACTCGGGGGAGAGACCCTTCCAGTGCGACATCTGCCTGCGCAAGTTCACCCTCAAGCACTCCATGCTGCGCCACATGAAGAAGCACAGTGGCGGTGGGCGTGGCAGCGGGGGCAGTCACAATGGCGATGCCGGCTGCCAATCCGATTGCTCGGATGATGAGCACTTGGGTGCCACGCCCCCAACCACGCCTACGCCAACACCCATGCCCGGCATATTGAACAAGCTGCTCTCCTCGGCGGATGAGGCAGCCAAGCTGCTGGGCGTGGATAAGTAG
- Protein Sequence
- MMRASERDRASASGDASSLRKKFRLNRSNVAGELSESGFVDGSANSGFLLSNSNSSAAVAAQSASASASSALLQASSSSSGGSSPQQGAGLCLSSAESGIGAGEEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHREEREGEEDEHITSTPDVATLLASGNTTPEHDHEHEHDDHDSAASHSLASTPSPTPPPPAAAAACLSCPVCPAHLVEPFETLPALWQHLDAEHADIPAKCRDCEVIFASHRQLQVHSCRRRQLLPPLLGNTVAASQLPSPIKHEPMERGEPSRDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSRDGDGEEAQDAFTSEFRRMKLRGEFPCKLCSAVFPNLRALKGHNRVHLAAVGAAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSRDEVKRAIIYHPAEDASSQEQEQHKAGTDLDLSYRSLTPPPPKLIIDEDDEDDEFDELDEEDEEEEMERELEEEQQQQQQQQEEEEQQQQQQEREREREPLPRSSTPIKLAKQVADTILEQAIKAGAAAAPADSTAAPSSATAPTAMKSMIAQADAVAKSLKDVASSPFKDDSQDLVPVAKLVDNATSNQSMSSFNNYFRPSDVVNHMEQSDEEGLVASGSASESNNSGTEDVAASATGANGGSSSSDTKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPAEDVREPIPVPKSVEEIELEEQRRRRRALEEERERERERERELERERELELEREPPPSSSAHSDEEGAPLRGAGAGAGGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSGGGRGSGGSHNGDAGCQSDCSDDEHLGATPPTTPTPTPMPGILNKLLSSADEAAKLLGVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -