Zcap014433.1
Basic Information
- Insect
- Zaprionus capensis
- Gene Symbol
- -
- Assembly
- GCA_018903675.1
- Location
- JAEIFN010000964.1:8741301-8747622[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.031 2.2 8.8 0.2 1 23 874 897 874 897 0.94 2 13 5.1 3.6e+02 1.8 0.2 1 23 1059 1081 1059 1081 0.91 3 13 0.00011 0.0081 16.4 2.7 2 23 1084 1105 1084 1105 0.97 4 13 4.4e-05 0.0031 17.7 0.2 3 23 1113 1133 1111 1133 0.98 5 13 3.7e-07 2.6e-05 24.3 4.1 2 23 1140 1161 1139 1161 0.97 6 13 3.3 2.3e+02 2.4 0.4 5 23 1174 1192 1171 1192 0.95 7 13 0.86 61 4.2 5.4 3 23 1199 1220 1197 1220 0.93 8 13 0.092 6.5 7.3 0.2 2 23 1231 1251 1230 1251 0.96 9 13 3.5e-05 0.0025 18.1 0.4 1 19 1257 1275 1257 1279 0.95 10 13 1e-05 0.00071 19.8 0.5 1 23 1287 1309 1287 1309 0.98 11 13 6.6e-05 0.0047 17.2 7.6 1 23 1315 1337 1315 1338 0.96 12 13 0.00013 0.0091 16.3 5.9 1 23 1343 1365 1343 1365 0.98 13 13 0.018 1.3 9.5 8.2 1 23 1371 1393 1371 1394 0.95
Sequence Information
- Coding Sequence
- ATGGTTGAGAGCATGCAGTGCCCCGTGTGCACCCTGTACCTGCATGCGGGTATGAATCTCTCCGATCATTTGGAGACACATCCCAAGGAGCAGGTGATCAAGGCATTGGTGCAGATGACTATTGTTGGCAACAATGTGGCAGGCAGTTCCTTGGCTACAGCTGTGCTCTCCACTGCCGCCGGTTGTGGCACAACCGATGGCAGTGGCAGCGGTGGCAGCACATCCTCCACTTCCTCATCGGCGTTGTCCTTGTCGTTGTTGTCGACTGCAGTTGATGTGAAACCAGATCAGTCCGGACACTTTGCTGCCCAACAACAACAACAACAGTCGCCAATGAAGTACGCATATGCAGCGCATGCAACGCTGCCTCCTCCGCCACCGCCTCCACTGCAGCTCTTTGCGCAACAGTCGACGACAACGCTGTCGCATCAGAAGCCCCCACCCGCCTATGGCGCCGCCATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACACGGATATCTTTCTAAATCCACCGCCACCACCACCGCCACAGTCCACATTGCCGACGTCATCGTCAGCCTCCTCCACAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACATCAAGTGGACGCAATATCAGCAGCCGCCAATCGACCAATTCGCCATTTGGTGCACTGTTAAATGCTGCCGCACAAGCTGCCTACGGTTCACCTGCCGCAGGGGCACCATCTGTGCTGCGTTATGCCGAATCACCTGTGGCCCACTACTTGGAGCGCGATAATGGCGACTTTATTGTGCAAGAGACGCCCAAGCATATTGTGGAATGCGTTGAAAAGGAGGATGGTGAATTCTCGGTCATTGAACGCATCTATCAATCGCCGCCCAGCGTGTTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGGAGACGGAGGAGAAGGTGCACAACTGGACGCATAGCGAGGATGAGGATCAGTCCAAGGTGTCACATGGCCATGTGGAAGATGGCGATGATGAGCGCGAGGATAGCCGCAGTAGAGTTGGTGTCAATCAGACAACGAAAAGAACATCGCGCAAAACTAAATCCGGTGGCAGGATAAGCAAACGCACTTCCAAGCATCATCAGCATCAGCCAGTGGAGGATGAGGATGACTTCATGAGCGTCGGCAGCAGTTGTGCCGATAGTGACCATCAGTCCGAGCAGCAGCATCAACACCATCAACAGCCACAGAATGCCTCAAGTGCTGTACTGGCATCGTCATCATCCTCATCATCTGCACAACATCTCTCCACGGCACCCTCCACCTCAGCTGCAGCTGCTGCCGCTGCCAACAGCAGTGGTGTCTCATCTGCAACGGGAAGTTCCAGCGGGGCCACCAAGTCGAAGAAGAATCGCGTGACGGTGCTGAGTGATGTGCCGCTGAATATGAATGAGTATTTGGATCTGGTTGGCAACATTGTGGCATCAAGTCGCATTGGTGCGGCACGTCCGTTTGCTGCCGTAGCACCAATCCCGCTGCTTAAGCAGCAGACCCAATCGGGCACTACATTTGTTGTGAATGCGGCAAGCTTTGCCTCGGCCGGATCCGTCTTTGCTGTCAATGCCAGCAGCAATGCCGTCGGCAGTCCGAGTGCAAAGAAGGCAAACAATACGCAGGGCGAAGAATATATATTGCCCGATGATGACAATCTGGAAGTGGATGAAATTGTGATATCCTCCTCTGTGGCGGCGGTGGATAGTGATGCTAGCGATGCCAAATATTTGGATTTGGATGCGTGCAAGCGGGAACAGTTGAGCAACAGCAGCAGCCATTTGCCATCGGTCTCGGCATCCACATCGACGACGTCTTCTTCATTTGCTGCTGCTGCAACGGAAAGCAGTTTAGTGGGTGGTTTAGGTCTCAACATACGCACAGATGAGAAGATGCCAGCCAAGGGGGAAATATCCGAGCAGGAGAGCAATTGTGACATTGAGAACTCCTGGAGTCAATCGGTAGGTATGTACGGCGACATATCACAGCGTTACTTTAGAAATCAGTTCTCAGATGGGTACAATCAACAGCTGGCCGATTGGCGTCAGGATTACTATCCGGCGCAAGATCTCAGTGGCCAGCAATCGCAGCAGGAGCAGCGTGAGCACAAACGCACTTTTGATTTTAATGCCGTCGCTTCGGACTATGCACAACCGGGTGATCTGGACGCCTCCTCGAGCTCGGCGAGAAGCAACAATCATTTGTTGGATGCTCAACCCACCACCTCATCATCTTCATCGGCATTGCTGGCTGGTCCACCAATTGCCTCGACTTCACGCGCCGCAGCCGAAGCAGAAGCAGCTGTTGCAGCTGCGTTGGCACAACGCAAGCCCCCGCGTCGCAAGATTTACAAGTGCCCACATTGTGTGGCCATCTTTGAGAAGCTGAAGGAGCGCAATGCTCACATGATTGGTGAGCACAATTATGTGCGGCAGAATCGTCGTTTGATCTGTACACAGCCACTGGTTAGTGGCACAATAATGTCGCAGCCACAGGATGCGCAACAGCAGCAGGCGCAGCAGTTATCTCTGCAACCGGAGTCAAGCGATGTTGCTGCTCTGCAAGAGGACTCCAAGGATGGCATAGTGAAGATCAAGCAGGAACATTGTCAAGATAAACAAGACACGTCAGGGCAGATGCTTGATCAAATGGAGCTACCCGACGTGAAGGATGCCGATTTACTTGATGTGAACGGTTCAAATGGACGCGATGCCGACGTGAAACCACCGACAAGCACCACTGAAATAGATCAGAAGCCATCAATGGCACCTTTGGCAATTACCACACCTGCTGCCAAGCTGGCGGCACTTTATCGCATGCTTATTTCCTACAATGAATCGAAACTGGGGCAGGAGCGTAACAATCTCAGCGAACTGGAGCAGAAAGCCATGGAGAAGTCCATATTTCTTTGCTATGTTTGTCGTACGGATTTCCCTTCGGTTAAACTCTACGATGCCCATTTAACGGAACATCCCGCCGAGTGTTTTACGTGCGGCAAGAAATTCTATCGCTGGAAGAACTTCTCATTGCATCTGAAGCGTCATCTCGGCTGGAAGGAGTTTGGCTGCTATGTCTGTGACAAGAAGTTCGTGGTGCGCAGCGCTCTGGTCGAGCACATGCGTATGCATACGGGGCAGAGTCCACTCAAGTGCAAGATATGTGGCAAAAAATTCAAGCGTTACTCCAATTTGACGCAACATCGCAAGCGACACACCAAAATGATGGTACGCAAAAAGGAATATGTTTGCCACTGCGGCGAAGTGTTGCCGTCGAAGGCACGTTTTCTGTGGCACAAGGAGACGCATGATCTGAAGCCCAAATGCTGTCCCTATTGCTGCGATCGTTTCGTGCACGCCAATTCGCTACGTCGCCATATACGACTGGCGCATTCGGATAAGTTCGACTATGCCGAGCCAATGGAGTGTCCCATGTGCAAGCAGATATTCGCCAAGACATCGATAAAGGCGCACATGGCAACGCATTCGACAGATCCGCAATACGATTGCGCCATCTGCAACAAAAGTTTCTCCACCAAATGGAATCTCAAAATACATTCGTGGGTGCATGCGAATCGCACAGCCAAACCCTTCAAGTGCGAGTACTGCCCCAAGGCATTTGTGCGTGAACTGGACTTTAAGAACCATATGAATGCACACAAGCAGATCAAACCGTACACCTGTGAGTATTGTGGCTGCAAGTTCATACGCAAGTACAACTATATGCGACATCGGCGGGAGCATCATGGCAACAAGAAGTTCACCTGCGATCAGTGCGACAAATCCTTCCATCGACATTACTATCTGATTGAGCATCGGCGCATTCACACCGGGGAACGGCCCTTCCATTGCACGATTTGTGGCAAGAGCTCCACCACGAAAACCAATCACAACAAGCATCTGAAGATTCATCATTCGCGCGATCCATTCACAGTGGAGGTCTAA
- Protein Sequence
- MVESMQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGNNVAGSSLATAVLSTAAGCGTTDGSGSGGSTSSTSSSALSLSLLSTAVDVKPDQSGHFAAQQQQQQSPMKYAYAAHATLPPPPPPPLQLFAQQSTTTLSHQKPPPAYGAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTDIFLNPPPPPPPQSTLPTSSSASSTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSSGRNISSRQSTNSPFGALLNAAAQAAYGSPAAGAPSVLRYAESPVAHYLERDNGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLXXXXXXXXXXXXXXXXQETEEKVHNWTHSEDEDQSKVSHGHVEDGDDEREDSRSRVGVNQTTKRTSRKTKSGGRISKRTSKHHQHQPVEDEDDFMSVGSSCADSDHQSEQQHQHHQQPQNASSAVLASSSSSSSAQHLSTAPSTSAAAAAAANSSGVSSATGSSSGATKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGAARPFAAVAPIPLLKQQTQSGTTFVVNAASFASAGSVFAVNASSNAVGSPSAKKANNTQGEEYILPDDDNLEVDEIVISSSVAAVDSDASDAKYLDLDACKREQLSNSSSHLPSVSASTSTTSSSFAAAATESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSVGMYGDISQRYFRNQFSDGYNQQLADWRQDYYPAQDLSGQQSQQEQREHKRTFDFNAVASDYAQPGDLDASSSSARSNNHLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAAVAAALAQRKPPRRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICTQPLVSGTIMSQPQDAQQQQAQQLSLQPESSDVAALQEDSKDGIVKIKQEHCQDKQDTSGQMLDQMELPDVKDADLLDVNGSNGRDADVKPPTSTTEIDQKPSMAPLAITTPAAKLAALYRMLISYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQSPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01558467;
- 90% Identity
- -
- 80% Identity
- -