Basic Information

Insect: Zaprionus capensis
Gene Symbol: -
Assembly: GCA_018903675.1
Location: JAEIFN010000040.1:6117247-6119211[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.7e-06 0.00033 20.8 0.5 2 23 70 91 69 91 0.98

2 15 0.00019 0.014 15.7 3.4 1 23 97 119 97 119 0.97

3 15 0.00074 0.052 13.9 2.0 1 23 125 147 125 147 0.98

4 15 3.4e-05 0.0024 18.1 0.8 2 23 176 197 175 197 0.97

5 15 2.7e-05 0.002 18.4 3.3 1 23 203 225 203 225 0.98

6 15 0.0063 0.45 11.0 2.6 1 23 231 253 231 253 0.98

7 15 0.0018 0.13 12.7 0.1 1 20 347 366 347 367 0.95

8 15 2e-06 0.00014 21.9 4.5 1 23 381 403 381 403 0.98

9 15 1.2e-07 8.8e-06 25.8 1.2 1 23 409 431 409 431 0.99

10 15 8e-06 0.00057 20.1 6.6 1 23 437 459 437 459 0.99

11 15 5.9e-07 4.2e-05 23.6 2.4 1 23 474 496 474 496 0.98

12 15 1e-06 7.4e-05 22.9 3.3 1 23 502 524 502 524 0.98

13 15 2e-05 0.0014 18.9 7.9 1 21 530 550 530 552 0.96

14 15 9.9e-05 0.007 16.6 4.0 2 23 559 580 558 580 0.97

15 15 5.3e-08 3.8e-06 26.9 6.5 1 23 586 608 586 608 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.7e-06	0.00033	20.8	0.5	2	23	70	91	69	91	0.98
2	15	0.00019	0.014	15.7	3.4	1	23	97	119	97	119	0.97
3	15	0.00074	0.052	13.9	2.0	1	23	125	147	125	147	0.98
4	15	3.4e-05	0.0024	18.1	0.8	2	23	176	197	175	197	0.97
5	15	2.7e-05	0.002	18.4	3.3	1	23	203	225	203	225	0.98
6	15	0.0063	0.45	11.0	2.6	1	23	231	253	231	253	0.98
7	15	0.0018	0.13	12.7	0.1	1	20	347	366	347	367	0.95
8	15	2e-06	0.00014	21.9	4.5	1	23	381	403	381	403	0.98
9	15	1.2e-07	8.8e-06	25.8	1.2	1	23	409	431	409	431	0.99
10	15	8e-06	0.00057	20.1	6.6	1	23	437	459	437	459	0.99
11	15	5.9e-07	4.2e-05	23.6	2.4	1	23	474	496	474	496	0.98
12	15	1e-06	7.4e-05	22.9	3.3	1	23	502	524	502	524	0.98
13	15	2e-05	0.0014	18.9	7.9	1	21	530	550	530	552	0.96
14	15	9.9e-05	0.007	16.6	4.0	2	23	559	580	558	580	0.97
15	15	5.3e-08	3.8e-06	26.9	6.5	1	23	586	608	586	608	0.99

Sequence Information

Coding Sequence: ATGAGTGGATTAATAGACATTAGCTGTATAAAGGTCGAACAACAGCAGGAGGAGGAGACACTAGCGCAGGACATGAGCTGTGATATTGATATAGGTCCCATTAAAATAGAACCTGAATGGTATGAAACATCGACACCAGAACCAGAGAAGCAACTACCAGCTTCAGGAACTAAAACTGCCATCAAACAGGACCTCAAAAGGAGCAACCAATGTCCTCACTGCCCGCGACACTTTGAGCGAGCTGATGAGCTAGCGATCCACATACAGATTCACAGTGATAAGCTGCTATACAAGTGCAACTACTGCCCAAATAGTTTCTCCCATAAATCCGTATTCACGGCGCATGTGTTTTCACATACGGGAAAATTCCCCTTTCAGTGCACTAAATGCGAACAAGGTTTTCTCAAAAACTATGAGCTAAAGAAGCATCAACTTATGCACTGTGAAGTGAAAGTGCGAAAACAGACACATAGTGCACAGTGTCCCAAGAACTGCGAACATACAGAGACACGCAAAGAGCTGCTGCAATGCCCGCGGTGTCCTCGTGGCTTCTCCAAGTGCTACGAACTGCAGATACATCTGCAAATCCACAGCGATAAGTTGGCCTACAAGTGTGCATACTGTCCGAACAGCTTTGCGCATAAATCGAATTTCATGGCTCACATTTGTGAGCACACAGGTAAATTTCCTCACAGATGTCTACAGTGCTTGCAGGGGTTCATGAAGCGTTACGATCTCATGCTGCACATGCAGACACATCTGCAGCAAAGTTTGATCGAGACTCAGGAGCCGACAACTAAAATACGCCGCGTTGATCTTAAAACTATAAAAGATTCTTTGAGAATCAAGAGCCCTGGAGTACTTATAAAAGATACTACGAAAATAAGCAAGATTAAAGAGGAACCTCAGATAGAGACAATAAAGAAAACAACCTTACCGCACCCCGAGACGACAAGGAATACTCTTCTAAACACTTTGACTGATAAAAGTTTAGTTGAAACGAAGGCAGATGAGAAACCCGCTAAACCTGATGAATCCTTTAAATGTGCGATCTGCAGCAGGAACTATAGCAATGCAAATGAACTGCGGCTGCATGAGAAATGTTTCACACACTCGAGCAAATACCTTGTCAAGCGTCTGCACAAGTGTAACCAATGCTCGAAGACGTTTACGACCTTAAACAACCTGACGATGCATCAGCGAGTACATACGGGCGAACGTCCCTATCAATGTCCTCACTGCCCGCGCAACTTTATACAGAACTCGGGACTGCAGTTGCATATGAGGCAGCACTCTGGGGATAGGCCTTACCAATGTCCTCACTGTCCACGGGTATTTGCTAACCATTCGAATTGCAAGAAACATATAAGGACACATATCACAGAAGGAGACTCTGCGGAAGTGGCGAATGCAAATCCGTACAGGTGTCCACACTGTCCAAGAACTTTTGCGCAGAACTCACATTTCTTGGCGCATGTACGCGGACATACTGGTGAGCGTCCCTTTAGCTGTACCCAATGCCCGAAGGTCTTTAAAGTCAACCATGATCTGAAGAAGCATCTGCGCAGCCATACGGGCGAGCGTCCCTTTAAGTGTCCACATTGCTCAAAAACCTTTGCTCAGAACTCGCATTTGCATGCCCACATTCGCTGCCACTCGGACGAGCGAAGCATAAAGTGTCCACATTGCCCGAGCACGTTCCACAGGAGCTTCAACCTGAAGGTCCATCTCAGCACGCACACGGGTGAACGGCCCTACAAGTGTTCGCACTGTTCCAAGGTCTTTACTCAGAACTCCCATCTTACGACGCATATGCGCATCCATACGACAGCAGATTAA
Protein Sequence: MSGLIDISCIKVEQQQEEETLAQDMSCDIDIGPIKIEPEWYETSTPEPEKQLPASGTKTAIKQDLKRSNQCPHCPRHFERADELAIHIQIHSDKLLYKCNYCPNSFSHKSVFTAHVFSHTGKFPFQCTKCEQGFLKNYELKKHQLMHCEVKVRKQTHSAQCPKNCEHTETRKELLQCPRCPRGFSKCYELQIHLQIHSDKLAYKCAYCPNSFAHKSNFMAHICEHTGKFPHRCLQCLQGFMKRYDLMLHMQTHLQQSLIETQEPTTKIRRVDLKTIKDSLRIKSPGVLIKDTTKISKIKEEPQIETIKKTTLPHPETTRNTLLNTLTDKSLVETKADEKPAKPDESFKCAICSRNYSNANELRLHEKCFTHSSKYLVKRLHKCNQCSKTFTTLNNLTMHQRVHTGERPYQCPHCPRNFIQNSGLQLHMRQHSGDRPYQCPHCPRVFANHSNCKKHIRTHITEGDSAEVANANPYRCPHCPRTFAQNSHFLAHVRGHTGERPFSCTQCPKVFKVNHDLKKHLRSHTGERPFKCPHCSKTFAQNSHLHAHIRCHSDERSIKCPHCPSTFHRSFNLKVHLSTHTGERPYKCSHCSKVFTQNSHLTTHMRIHTTAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01557692;
90% Identity: iTF_01550405;
80% Identity: -