Zcam008626.1
Basic Information
- Insect
- Zaprionus camerounensis
- Gene Symbol
- -
- Assembly
- GCA_018904165.1
- Location
- JAEIFS010000037.1:2177356-2179926[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.5 4.6e+02 1.5 5.0 2 23 238 260 237 261 0.93 2 10 0.051 3.6 8.1 2.3 6 23 269 286 268 286 0.98 3 10 0.00012 0.0086 16.4 2.8 1 23 292 315 292 315 0.93 4 10 0.00014 0.0097 16.2 2.3 1 23 323 345 323 345 0.97 5 10 6e-05 0.0042 17.3 0.4 2 23 351 373 350 373 0.96 6 10 0.13 8.9 6.9 0.1 2 23 379 400 378 400 0.95 7 10 0.55 39 4.9 4.4 2 23 409 430 408 430 0.91 8 10 8.6e-05 0.0061 16.8 0.9 2 23 438 460 437 460 0.95 9 10 5.7e-06 0.0004 20.5 1.7 1 23 466 488 466 488 0.97 10 10 0.0009 0.064 13.6 8.9 1 23 494 517 494 517 0.98
Sequence Information
- Coding Sequence
- ATGATTTGCCGTCTGTGCCTGAACAGCGCCAACGACACCATACAAATATTCGAGGGTGTTGGCTTGTCCCTGAACGTTGCTGTGGTGCTGGCCAAATACTTTTGGTTTCAGCCCAAAAGCGATGATCCCATATCGACAGAGATCTGCGTAGGCTGTTGGACACGTGTCAACGACTTCAACGAGTTCTACACGAGTGTGGAAAAGGCGCATCGTTTGCTCACCGAACGCTTCTCGTTGAAAGGAGGTGAGCAGCAGGAGAAGCTCCCGGCGAGCAGCCCGAAGCAGGAGCAGCCAAGTGATGAGTCCAAAGAGTTGTCTGACGATGACTTCATCGGGCAGGATGAGGCGCTGTCTGTGGCGAGCGGCGGTGAGAGCGATGCAGCGGCCTCCTTCAGCAATGAACAGTTCCTCAACGATGTGCTGGCCACGCAGCAGCCCAGCGAGAAGCGTGAGGAGCAAGTGCCTCAGCAAGAAGCACAGCCTGAGCGCCGTGAGATACGTGCAACACGTGCCAAGAGCAAAGCCATGAATGAAGCTCTGCCATCGCCAGCTGTAAAAACATCGACCACGCCCACTGTCAAACGTCGCGGCAGATCGAAGTCCAGCAAGGAAGTCAGCAGCATGGAGGAGGTGCCAAAGAGCAAGCGCTATGTGGACTACAAGAAATCCATGTTGGAGATTGATGCAAAGATAGCAAAGCACATGCGGCTCACTTGCAACGTGTGCCACGAGGTGCAGGAGACCTTCCTGCTGCTCTGCAAGCACATGATGCAGACACATCACTGCAAGGGCTACGCCATGTGCTGCAACAAGAAGTTCTACAAGCGTTCCTTTCTCACCGATCACATTGATCGTCACTCGAATCCCGAGAAGTTTAAGTGTGATCTGTGCGACAGAACCTTTGCGGACAAGCAGTGTCTGCGCAACCATGAGCTGCTCAAGCATCAGCCGGACGAGCAGAAGATCTTCATGTGCGAGCACTGCCCCAAGCGCTATACCAAGCAGTATTTGTTGGATCAGCATCGCATCATACACAAGGAACGCAATGTCCCCTGTGATATATGCGATAGACGCTTTCCCAATGTATCCATGCTCTGCACGCATGTCAAGATGGTGCACGGCAATTATGGCACCATGTGCGACATCTGTGCGCAGGTCATACGTGGACGCGCCGCCTTCCAGCGTCATCAGCTGGAGCACGCTGGCATTACAGAGCCCAAGGTGCAGTGTGATATCTGTGGCTCGTGGCACAAGAACAAGTACAGTCTGAAGAAGCATGTGCGCCGGCACAATGGTTCCTCCGAGGAATGCACCTGCAACATCTGTGGCAAAGTCTCCCCCAATCGCAGTGCAATGCTCAGTCATCAACGCTATGTACACAATGCTGATCGTGTGCATGTGTGCAGTGTGTGCTCCAAGAAGTTCAAGAAGGCCATCAATCTCAAGGAGCACATGGCCACGCACACTGGCGAGGTGCTCTACAAGTGTCCACACTGTCCCAAGACCTTCAATTCGAATGCGAACAAGCATTCGCATCGCAAGAAATGCCATCCCAAGGAGTTCGAGGAGGCGCGCAAGGCACGCATGCAGAATCGCATGGCACCAGTGCAGGCAGGGGAAACCAAGTCCAGTTTGATTACCATCACCACCACAGGCGACACAGATGGGCAGCTGGAGACGCACAACATACTTGTGACCACAACGGAGGACACTGAGGATCAAGAAGGGTTTAAGGGTGAAGAGATTGACTTTATGCTCTCGCTCAGTCCGCAGCCGGCGACGGAGTAA
- Protein Sequence
- MICRLCLNSANDTIQIFEGVGLSLNVAVVLAKYFWFQPKSDDPISTEICVGCWTRVNDFNEFYTSVEKAHRLLTERFSLKGGEQQEKLPASSPKQEQPSDESKELSDDDFIGQDEALSVASGGESDAAASFSNEQFLNDVLATQQPSEKREEQVPQQEAQPERREIRATRAKSKAMNEALPSPAVKTSTTPTVKRRGRSKSSKEVSSMEEVPKSKRYVDYKKSMLEIDAKIAKHMRLTCNVCHEVQETFLLLCKHMMQTHHCKGYAMCCNKKFYKRSFLTDHIDRHSNPEKFKCDLCDRTFADKQCLRNHELLKHQPDEQKIFMCEHCPKRYTKQYLLDQHRIIHKERNVPCDICDRRFPNVSMLCTHVKMVHGNYGTMCDICAQVIRGRAAFQRHQLEHAGITEPKVQCDICGSWHKNKYSLKKHVRRHNGSSEECTCNICGKVSPNRSAMLSHQRYVHNADRVHVCSVCSKKFKKAINLKEHMATHTGEVLYKCPHCPKTFNSNANKHSHRKKCHPKEFEEARKARMQNRMAPVQAGETKSSLITITTTGDTDGQLETHNILVTTTEDTEDQEGFKGEEIDFMLSLSPQPATE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01553461;
- 90% Identity
- iTF_01555635;
- 80% Identity
- -