Zbog003618.1
Basic Information
- Insect
- Zaprionus bogoriensis
- Gene Symbol
- -
- Assembly
- GCA_035046045.1
- Location
- JAWNOI010000046.1:32339-38438[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2 76 3.9 2.4 3 23 317 339 315 339 0.90 2 11 0.54 34 5.0 0.3 3 20 513 530 511 532 0.95 3 11 0.0034 0.22 11.9 1.3 2 23 558 580 557 580 0.95 4 11 0.084 5.3 7.5 0.6 1 23 597 620 597 620 0.95 5 11 0.42 27 5.3 0.3 1 21 625 645 625 649 0.91 6 11 0.011 0.68 10.3 0.2 2 23 694 716 694 716 0.95 7 11 0.41 26 5.4 0.1 1 21 721 741 721 742 0.92 8 11 4.7 3e+02 2.0 1.1 2 23 763 784 762 784 0.90 9 11 3.6e-05 0.0023 18.1 2.4 2 23 799 819 798 819 0.97 10 11 0.00017 0.01 16.0 1.0 1 23 825 848 825 848 0.95 11 11 0.23 14 6.2 0.1 1 11 872 882 872 885 0.84
Sequence Information
- Coding Sequence
- ATGAACGCGGAGTCGGACGATCTGGAGGACACGCATCTGTGCATCAAATGCAATGCGACAATTGTGGGCCTGAGCAAGTACATCGAACATCGCAAGGTCAACTGTCTAGGCCTGGCCAGACGAACCGTGCACCAGCCAAAGCGAGAGCACGACCAtgcaccagctgcagcaggagtaACAGCATCAAGCACatcaaccacagcagcaggagccgcaTCGAGTCGCAGCACGCTGGAGCACAGCTACGATGGCTTCCACTTTGCCGAACCGGCAGCAAGTCATGGCGGCAAGAGCTCCAAATCCCTGACAGACTCGTATGAGCCCAGCTATGAGCTGGGCGCCGATGTGTTCTTctcgtcgctgcagctgcagagcgtCTCCACGGGCGGCAAGACGGGATCGGTACCGGGGCCGGGGTCGGGGCGAGTGGCCGAGCGTCAGAACAAGGACGAACCCAACTGGCATGCGACGAGTACTTGCTCCGATCCGCTGCTGAAGGCGGTGCGCGAGCAGGAGGAATCCGACTTTAAGCCACTGAAATTTGTGCACTCACCCGAGGCGAGTgatgaggaggacgacgacgatgcaGATGACTTCGAGGATGCGGATGATGAGCCGGAACATGACAATGATCACGATCAGGATCACGAGCATGATCACGATCACGATCACGATCAGGATGTGGAGGAGGATTACGATGCACCGCCCGCGGTGCCGGCCACACATACCGGCGGCAAGTGGCGGCCCGAGCATCGTCCGCAATtgcgacacacgcacacgcatctGGCCCGCATCTCGCCCAGCTGGGATGAGCTGGCCGAGGAGTCGCATCACGATCACCCGCCGGCGGAGCACACGCACGGCAAGTGGGTGCCTGGCAGCAAGCAGCTCGAGTACCGCGAGAACATCGATCTgaccaagctgcagcagcccgaCGCCAGCTACTGGTGCAACATCTGCTGCCGGCGCCTCAAGACGCGCACGAACTACGAGCAGCATCTGCAGAGCGGCTACCACCAGCGACGCGCCGATGCGGAGCGCCAGCTGGAGCAGGCACAGCTTGAGGGTGCGCAACTGACGTTGGCCACGGACTTTCAAACGCAAAGCGAGGAGCAGtgccagcaggaggaggaggaggaagaagaagagcggGAGCAGAaacaggagcaactgcagcagcagcctgagcagcctgagcagcagcagcaacagttgccaacGGAGCTGCCTCAGCGGCGTCGTCTGCGTCGCGCCaatctgctgcgctgcgagctCTGCCGGCACAGCATGCCGCGCCATCTCATGGGCAAGCATCTGATCTCGCACTATCATTAccgccggctgcagcagcagcagacgccgctGCGCCAGAGCGCGCTGCACGCCATCCTCGAGCACATGGCGAGCATTGTGCGACAGGCGCCATTCCAGTGTTTGCCCTGTCGCTTCTATGCCAACACGGAGATCGCCTTTCAGGCACATTGGCGCTCGCCCGCGCATGTCGAGCTGACGCAGCGCCTGGGCGGACAGTTCTGGTGCAGCTACTGCCAGTTCGAGTGCGCGGACAATGACGAGATGTGGCAGCATCTGCTGGATGATGCCACACACAAGGAGGTGCTCTTCGCGCTGAACCGCTCGGTGCCCGTCTGCATTGCCCAGCGgcgagcgctgcgctgctccgtCTGCGGCGAGTGCTTCCTCTACAATGTGCAGCTGCGTCGCCATTTCGCCACAGAGCACGCCGGTCTGCCGGCCACGGAGAGCGCCTCGGACGAGTATCAGTGCCGCTTCCGTTGCGGCGTTTGCGGTGCCGCGCAGCGTTCCCGCGTGGCACTGCAACGCCATGAGAAGCACAAGCATCGCGTGACCCGCTACTACTGTGCCGTCTGTCGCTTGGAGTTCGAGACGCCGCTGCAGGCGCGTCGCCATCGCAGTCTCATGCAGCATCGCCGGCATCCGAGTCGCCAGCTGGTGGCGTCGGGCACCACGTCCTCAGAACGCGATATCGAGCATATGCTGCGCGAGGTGCTCGACGTGGCTGAGCCGCCGGACGAGAAGCGGATCTGCCTGGCTGCCAATGAGTGTGCCAGCTGCCGGCTCAGCTTCGAGACGCCGCAGGCGCTCGTCCAGCATCGTCGCGTCTCGCATCCCATGGACAATCATGCGTGTCTCAGCTGCGGCGGTAGCTTTCAGTCGGCGCAGGCATTGGGCCGCCACACGCGCAGCTGCCAACCGATCGCCTCCAGCTCGTCGGCTGCGGAGGCTGCGCCGGCGGGCAGCGGCTGGCACTGTGATCAGTGCACTTTCAGCGCCAACTACGAGTCGGATCTGCTCTATCATCGCGTCTTTCACGGCCGCGACGCGTCCATTGGCAGCGGCAagaacgagctgctgcagtgtcCATTGTGCCCGAAGCGCTTTCGCAAGCATTCGCTGCGCGCCCATTTGCGCAATCACACGGACGAGCGGATCTTCGAGTGCGGCGAGTGCCTTGCGAAGTTCGCCAGGCGGCACAATCTCAAGAATCACATGGTCAGCATGCATGGCCAAGCAGCGACAGAGCAGGCAGTGGCCAAGAAGACGCCCAAAAAGACACCAGCATCTAGGCAGAAATACGAGTGCAGCATCTGCGGCAAAGTGTTGGCCAAAAAAGCCTTCGAGTGCTCCAATATGGGTCTAATAGCCTGGAAGCAATATCTGCTGCAGGTTTCTTCCAGTTCCCGCGACTCCTGA
- Protein Sequence
- MNAESDDLEDTHLCIKCNATIVGLSKYIEHRKVNCLGLARRTVHQPKREHDHAPAAAGVTASSTSTTAAGAASSRSTLEHSYDGFHFAEPAASHGGKSSKSLTDSYEPSYELGADVFFSSLQLQSVSTGGKTGSVPGPGSGRVAERQNKDEPNWHATSTCSDPLLKAVREQEESDFKPLKFVHSPEASDEEDDDDADDFEDADDEPEHDNDHDQDHEHDHDHDHDQDVEEDYDAPPAVPATHTGGKWRPEHRPQLRHTHTHLARISPSWDELAEESHHDHPPAEHTHGKWVPGSKQLEYRENIDLTKLQQPDASYWCNICCRRLKTRTNYEQHLQSGYHQRRADAERQLEQAQLEGAQLTLATDFQTQSEEQCQQEEEEEEEEREQKQEQLQQQPEQPEQQQQQLPTELPQRRRLRRANLLRCELCRHSMPRHLMGKHLISHYHYRRLQQQQTPLRQSALHAILEHMASIVRQAPFQCLPCRFYANTEIAFQAHWRSPAHVELTQRLGGQFWCSYCQFECADNDEMWQHLLDDATHKEVLFALNRSVPVCIAQRRALRCSVCGECFLYNVQLRRHFATEHAGLPATESASDEYQCRFRCGVCGAAQRSRVALQRHEKHKHRVTRYYCAVCRLEFETPLQARRHRSLMQHRRHPSRQLVASGTTSSERDIEHMLREVLDVAEPPDEKRICLAANECASCRLSFETPQALVQHRRVSHPMDNHACLSCGGSFQSAQALGRHTRSCQPIASSSSAAEAAPAGSGWHCDQCTFSANYESDLLYHRVFHGRDASIGSGKNELLQCPLCPKRFRKHSLRAHLRNHTDERIFECGECLAKFARRHNLKNHMVSMHGQAATEQAVAKKTPKKTPASRQKYECSICGKVLAKKAFECSNMGLIAWKQYLLQVSSSSRDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -