Zbog009608.1
Basic Information
- Insect
- Zaprionus bogoriensis
- Gene Symbol
- -
- Assembly
- GCA_035046045.1
- Location
- JAWNOI010000145.1:2011622-2013283[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.1e-16 5.7e-13 48.2 0.0 2 45 384 427 383 427 0.95 2 3 0.09 1e+02 2.6 0.0 28 37 457 466 456 471 0.90 3 3 2e-20 2.3e-17 62.2 0.0 2 42 493 533 492 535 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCATCCACAATAATGGACATACAGCGCGTACTGCTCAGCCAGCAGAGCAACAGCCAGAGCTGCgaggtgctgctggtggccaAGGACGGCACCAGTGTGCGCGCCCATCTCTTCGTGCTGAGCACCTGCAGCGATCTGATGCGCAATCTGCTGGTCGATCTGCCGCTGGGCCAGGAGGCCACCGTCATACTGCCCGATATACGGGGCGAGCTGCTGGAGAGCATGTTGTCGTTCATCTACATGGGCGAGACGAGCCTGCCGTCGGCGCTGCTCACCGAGTTCCTCGAGGCCATCAATCTGCTGGGCATCAAGTCGGCCATCAGCTTCGAAACGAATCCCAGCGCAATGaacagcaccaccagcaacgCTACTGGCGCTGGCTCGAGCATCGCTGCTGGCGCCTTGGCTGTGGAGGCGGCCAAGTCCATTAGTGGCCTGCAGATAGCCAACACTGCCATCatggaagaggaggaggaggatccCAGTGTTGTGGTTGGCAAATTGGATATGAGCAGCACGGTGCTCGGCGGTaatccgcagcagcaacaacagcagcaggagcagatcGCCAGGCCTTTGGAATACCTTGACGTGTATGGGGAGCAGCCAAAGATCACCTACTCCATTGAGCACATGGGCGGCACAACGAGTGGCAATCAGTACATTCTTACCGAGAACACTGGCACCTTTACCATCACACAGTCGGCGTCCTCGGTACACAAACTGGGCGTGCCCGCGGGCACAACTGTGGTGGATCACCATGTGGCCGGCGTGAGTGTCGCTGTGGCCGGCGGCATAACGGAGGAGGATGTCGACGCAGATGTTACAGACGATCATGAGGAATCCGAGTCGCAGCTGATCGAGGAGGAGTATGTGACGTCGGCGGAGCCACTCATCGAAATGTCCGGCGATGCGGATGTGGATATGGGCGAGGAGGCCCTGCACGAGGAGGATGccggcgaggaggaggacgaggaggagctgctggaTGTGAAGCCGCGCAAATCGCAGCTGGACATGAAAATGCTGAAGGCGAACGTCGTGCGGCAGCGTTCGCCCTCGATGAAGCCCTCCAAGAAGGCCATGAcgaagcagcaccagcagtgCGCAGCCTTCAAGAAGGAACTCAAGGACGACATCAATGATGCACTCGATCTGGCCGCGGACGCTGTGCTCCATGAGGGCTTAAGTCTGCAGAAGGCCGCCGATCGCTTCGACATATCAAAGACTGTGCTCTGGCGGCGCGTGCGCTCCAATCCCGCGTACATGCGCATCAAGCGCGAGAAGCCCTCGTTGGCGGAGGCGTACGAGCGCCTCAAGAACGGCGACAGCCTCAAGAGCATTAGTCAGGATCTGCGCATACCCATGTCCACGCTGCATCGCCACAAGGTGCGCCTGGCCGCGCAGGGGCGACTGCCGGACTTTGTCGCCTGCCGGCGGCGCGACAGCACGCCCAAGGATGAGCTGCGCGACAAGCTGGCGAAGGCCGTGCACGCCTGCATCAATGGTGGCATGTCGCAGAATCACGCCGCGAATCTCTTCGAGATACCCAAGAGCACGCTCTGGCGGCATCTGCAGCGGCGCGTCACCGAGGCCGAGCGCAAGGtcaaggaggagcaggaggacgacgacgaggaagaCGCGCTTAATTAG
- Protein Sequence
- MGHSSTIMDIQRVLLSQQSNSQSCEVLLVAKDGTSVRAHLFVLSTCSDLMRNLLVDLPLGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPSAMNSTTSNATGAGSSIAAGALAVEAAKSISGLQIANTAIMEEEEEDPSVVVGKLDMSSTVLGGNPQQQQQQQEQIARPLEYLDVYGEQPKITYSIEHMGGTTSGNQYILTENTGTFTITQSASSVHKLGVPAGTTVVDHHVAGVSVAVAGGITEEDVDADVTDDHEESESQLIEEEYVTSAEPLIEMSGDADVDMGEEALHEEDAGEEEDEEELLDVKPRKSQLDMKMLKANVVRQRSPSMKPSKKAMTKQHQQCAAFKKELKDDINDALDLAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLAEAYERLKNGDSLKSISQDLRIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEDDDEEDALN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01549669;
- 90% Identity
- iTF_01549669;
- 80% Identity
- iTF_01549669;