Basic Information

Gene Symbol
JARID2
Assembly
GCA_035046045.1
Location
JAWNOI010000173.1:1275483-1283827[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.4e-21 2.4e-18 66.1 0.0 6 89 1951 2032 1946 2032 0.92

Sequence Information

Coding Sequence
ATGGTTGTCTCCAAAGACAACAAGCGTCGCCGTAAGGAGACGGAGACACCGCCAACGTCAtcgtcggcagcggcggcggcggcggtggcagcggcagcaaatgTTGCTCTGGCCGTGGAGTCATCACCCGAGATGCCTAAAAGGACGAAGGTGCAGGCACAGCGTAAATTTGCCCAGGGCCAGAGTGCGCCCAGTTCCGCCGGCGGTGTGTACAGTGCTGCCAAcgtcgcagcagcggcagcagcagcggcggcggcgggatCTGGGCCCAGCACCTCCGCGGACAGCCATCAGCCTCCGATTGAGATACTGCCCAACAAGTGTCCCAAGCCGCAGGATTTCCTCACGTTTCTCTGCTTTCGCGGCACATCCGCGCTGCCCGCCCACCTCGACTATCTGAATCAGGGCAAATCCAAGGCCAACGACGTCCCGCCCAGCAGCAgtgacaataacaataagaagaaaaccaacagcagcagcagcaacaacaagaagaagcgaGGCAGACCcgccaaggcagcagcagcagcaggagcatcGCCCGGCAAAGCCGGTAGAGAAGTGCTCCAGCCGACGCCGGCGAGCAGTGATAAGATTGAAGCAGCCACGCCACCTGTGCTGCTGGCCGGAGCAGTGCGCAAGCGTGCCGAGGTGATAACCGAGGGCAATCGCAGAGGAGCACGACGCACAGAGACGCTGAAGCGTCGCTCGAATCGCGCCGCCAATaacaaagacaaagacaagGAAAaggacgaggagcagcagcagcaacagcatagCATTGCTGAtgccgaggaggagcagcctGACGAGGATGAGGAAGATGACGATGAGTTCTTTTCCGCACACGATGCCAGCTCGCGCAATGGTGCCGCCGGCGACGAGACGCTCTCCAAGTCAGACCAAATCCATTCGAATGCCAAGCGAGAGCGTGGCCAGATGACCAGAAAGTCCGCTGCGGCCGCCGCctctgcagcaactgcagagtCGCCTGTTTCCACAGTGGAGAAGGACAAAGACAAGGATAAGGATAAGgacaagaagaaggagaaggcgCCGGTGAAGCGATTGCGACAACGTGAATCACCTATTTTTATACCCTCACCCGAATCTTCCGGCCGAATGACACGACAGAGGGCTTTTTTTGAGCCCGTCAAGGTGCTGCccaaggaggagcagcaccaggcggaggaggagcagaagccAGACAGGAAGGAAGACAAACAACTCGCTGAGCCCAGCAAGCAATCGGaagcgccacagcagcagcagcaacagctcacCAAGGAGAAGACTAATTCCAGCATTTATGCCAAAGATgctgccaagcagcagcagcagcagctggagaacgGAGGCACTGCGTCCGAGCAGCAAAAAGCTCTCAATGTCTTCGACTTCAGTTCCGACGACGAGCAGCCCCTGGCGAAGgccataaaactgaaaaaaggTGCCAAGAAGGGCTCCACGTCCACGTCGGCGAATGCCACAGTAaccgcagcagctcctgccaCCGCACGAGGACGCAAATCCGCAGCCAGCGCTGCtaagaagcaacaacaacagcagcagcagcgcgtggaAGAGAAGGATAAGGAGAAGCCGGTGGAGCCACTGGCCGAACAGCCGCCCAACAAGGCGAAGCGTGGCAAAGCGCTCAAGAAGAAAGCCGAAGAAGAGCCTGAGcccgaggcggaggcggaggaggaggagcagacgCCACCATCGCCCAaaaagcagagcaacagcagcagcagcaacaacaacgcgcgcCCCGTGCGTCGCCAAGCACAGGCTAAGGCTGGCAAGGCTCAGGCGCAAGCTGCAGCCGAGCGTTCATCGAGTCCGAGCCCGCAGCGCAGTCAGCGACCGTCACGCAAGACGAAGGAGGCGGCTGCCATCTACATGGGCATCATTGGgcacaagctgcagctggccgacgacgaggaggatgatCTGTCGCTGGACAGCTTTCCGGAGATACCCAATGTGAAGCAGATGGAGAAGATAGAGAAGGAGATCAAGAAGAATGCGGTCGGAAAAAAGTCACCCAAACcagtagcagctgcagccggcgcaggggcaggagcagcagctgcagccaatgCAGAGCCCGCGGCGGGAAACtcgtcagcagctgctgcagttgccgagCAGCCCGAGTCAACtgtagcagctgcaacagcggcGCCGCCACCAAGACGAGGCCGACCACCAAAGCAGGCCAAGGGCAtggctgcagccgctgcagcagcgcctgctgctgccacagtgAAGCCACAGATCGAGGGAATGCTGGTCAAAAAGGGTGCACTGGCGCTGGCCAAAGCCAAGTccgaacagcaacagaaacagcagaaGGTCGACTCCGATGCGGAGGAGGATTTTCTCATCAACGAGGAGctaaacgaaacgaagcgaaagCTGGAGAAGAGCTTTAGCGACTCCGATGACGAACCGTTGGCCATCAAAGTGCCAACGTCATCGACAGCGACAaccacagcggcagcatccacgcccacagccaaggaggccagcaccagcagcagcagcaaagtcgaaaccacagcggcagcagtagcagcagcagcagcgacaacaataacaacaacccCGCCAGCAACACCAACGGTTacagcgccaacagcagcagcagcagcaagcacagcagcaactgttgcctcGGTGACTGCAGTCAaacccgcagcagcaacaacaccaacaacagcagcaagcctGAACTGCACACCGCCCAAACTAAGCGCTACTAACTTGGGTCTAGGCGCTGCGCCGCCCACCACACAACTGACTATGTTGCCGCTCACCGCAAAGCCCACACCCTTCTCCATCTCGCCGCCAAGCTATGCACCCACGGCGGCAGCCGCCCTCAAGGCCATGGAGAAGAAATCGCCGGTGCCGACGTCGAAGATCCTCAATGTGCCGGCAACGTATGCGTTGCCCGGCGCGGGACCAGGCCTAGGCtccgttggcgttggcgtggGCTTTGTGAAGACCTCGTCGTATTTGCCGCAGGCTTCGCCGCACTATCACACGCCTTATGTGCGCCCCTCGACGTTCGGGGCGGGCAGCaagacgccgcagcagcaggcaacagccGGAGCACTGACAACGACAGCATCCACTGTGGTTGCCTCCCCGCTGAAGTACCAGACGCCGCCCACCACCTACCCGCCGCCCATTGAGGCGTATCAGTGTCCCAAGATAAACCCGAACTTTCTGACGCCCAAATACGATCGCAGCAGCGTGCTGccgcgcagcaacaacaacaacagcagcagcggcggcatcgtcgtcggcaacagcagcagcatcagcaccagcatcagcaacagttTCACGGCGCCGACAGCAGCATCGCGTGCCTCACTCGCCAGCCTGAGCACGCCGAGCATGGCGAAAAGTGTGCTGCCTTCGCCGGTGGTCAGTCAGACGCAGAGTCTGAATCTCAGCATAAGCTCGACGGTGGCCtccacatcagcagcagcagcagcagcggcagctgcagccagcatacaacaacagcagcagcagcagcagcagcaacaacaacagcagcagcagcagtcgacctcgcagcaacagttgctagCGGCAAACACATCACAGCCTGCTGCacaaggcaacagcaacagcagcagcaataacaacaacaacaacaataataacaataacaacaatgctgCAGATCCGCTCAAGGATGAGATCGGCAGCATTTTGGCGCAGGCCACGCTGATGCCCAGCAAGGAGGAGTCGGGCAAGATCTTCGGCATTGCCAGCGTCAGTCTGGCGCAGAGCTCGGGCCCCGACAACACGAAGTGCACGCTGGGCAAATGCGGTTCCATCCACAAGCCCGTGCTGGGCCCCGTTGTGCCCACCGAGGGCTACTTCGGAGATCAGTTGACGAGCAAGGAGCGGCGCAAGGCCAAGGTGAACATGACGCACGAGCAGATACAGAAGTGGCTCATCGAGTGCAGCTCGAATCCGGACGAGATACAGGACGATCTCGATGATGACTACGACGACAGCCTGCGgccgcagcagtcgcagaCGCCGCCGGGGCCCACGCGCGACGACAAGGAGAGCACCAGCTTCAGCAGTTCCTCGAACAAGACACGCGGCGAGCTGGGCAAGTCGGAGTGCGCCTGGTCGGCCAAGGGTCCATCGCTGAAGGCGACGCCAGTGCTGGTCagtgcggcagcagcggcggcagcgaatCGCAAGGATGCGGAGACGGAGTCGGAGACACTGGACTTCGAGAAGTGTGTGTCGACGCCCGTGAATCTCAGCCAGAAGTCGCAGCTGGAGCCCGTTGTCAGCGAGAAGAAGCTGCCCGAGAAGAAGGGCAAGAACGCAGCCAGCAACAGCGCcaaggcggcagcaacaattgcaactgcagcagcagcagcagcagcgagtagcAAGCGCaatgcagctgccacgcctacgACAAGTGCAACGCCTCCGCCGCCCAGCAAGCAGAAGGCGGGCAACAAGCGCaatgcagcagcgacagcagccagcagcagcgccagcaacacgCCCGCCTCGCAAGCAACaagaaatgcagcagcagaaaccaccacaacaacaacaacgacggcgacgacgccAACAAAGCGCACACCCGTCTACCAGAGCAAGGCCAAGGCCCAAGCGCAgtcggacaacaacaacaagcagcagcagtcgcagcagcagcagcagcaacagcagagcgcGGAGAAGGCAGCGACAACTTCGGTTTATGCCTTCGGCAAGGACGAGGacacagcaactgcaacagcaactgttgctgctgctgctgctgccggtaaGGGCGCAAATCGTCGTCGCAATGCCGCCGATGCTgaagctgccacgcctccgccGGCGCTCAGTGAACGTTCGCCCACCAAGAAGCGCgccgcagcggctgcagcagctgctgccaccgcgGTGCAGCTGACTCTCAGTCCGAGCGAGAAGCTGGAGTCCAAGTCCAAGGCAACGggcgcggcagcagcgcgcaatgcgaagaagcaacagcaaaagcaggcggcagctgccagcgcagGCGGCGATTCGGATGCAGAGGGTGCTACCTTCTATATACCACTGCTGCAGGGCGCCAGTGGCGGTGAAAGCGGCATACAGGGCGTGGCAGTTAAGCTGGGACGCGAAGGACCCGACGGACCCAATCAGAAGGTCGTGATGCAGGCCACGCTGGTGACCAAGGCGCAGATGGACACCAATTCCAAGCCGTTGCCTGACAATGAGTTGGTCAAGACGCTGCTCAATGCGGCGACCACGAGCAACGATGCAACCGtaggtgcagctgcagctgcaacagcaacagcagcaactggcacgggcacgggcactgGCAACAGCCTGAAGGCAAGCACCTccacggcggcagctgcagcgactggcTCCAGCCTCGTGCGCGTCAATTCGAATTCTTCGCTGTTCTCCGGCTCCGCCAAGTCTCGcacagcggcgacggcggcatcagctgctgctgcagcagccgcagcgagCTCTGCCCTGGCCAAGAAGTACAAAGACGACACGCCCATCAAGATGGCCAACAACACGGCGTTCCCGCGCCACGACGATCCCACGCAAATGGTCGAGGCGCCTATCTTCAAGCCCACCGAGAAGGAGTTCGCCGATCCCATCGAGTTCATCGAGCGCATCACTCCGATTGCCGCGCGTTTCGGCATCTGCAAGATCATACCGCCGGCCAGCTTCAAGCCCGAGTGCCGCATCTCGGACGAGATGAGGTTCACGGCGTACAATCAGTACGTGCACAAGATGCTGCACCGCTGGGGTCCCAGTGCCAAGGAGCTGAGCGCCATCAAGAAGTACTTGGCCACACAGAGCATTGTGATGAATCACGCGCCGTGGATCGGCGGCATGGAGGTGGACCTGCCGCGCCTGTATCACACGGTGCAGGAGCTCGGCGGCCTCAAGGAGGTCATCGAGAAGAAGAAGTGGGCGCGTGTGGCCGAGGACATGTGCATACCGAAGCTGGCGCAGGATCGCGTGACTAAGTTGGACGACATCTACTGCAAGTATTTGCTGCCCTACGACACGCTGTCGCCGGCGGAGCGCCAGAAGCTCTTCGACGAGGTCGAGGCGGATTGGGCAAAGCGCGAAGCGCGTGCGCGACGCAACGCTGATCGATTTGTCAACAGCACGGAGAGTGTGTCCAATGAGGAGGACGATGTGTCCACCGATGAGGACGAGGAGTCCGAGGAGGAGATCGACGGCGTCTCCATGGAGTGCATTGTCAAGGGGCGCAGCATGCCGCTTAGTCAGTTCTATCGCATCGCACGGAACACCATGGCGTTGTGGTTCAAGAGCACTGATCCCACCGTGAACGAGGTGGAGGCGGATTTCTGGCGTCATGTCGCCGTGCGCGACAgtcatgtgtgcgtgcattcCGGCTCCATTGACAGCTCCGGCTGGGGCTACGGTTTCCCGAGTCCGGGTCCCAAGGGCAAGGGCTCCAACTATGCGCGTCACCCCTGGAACCTTAAAGTGCTGACGAACAATGCGGGATCTGTGCTGCGCTCGCTGGGACCTGTCATGGGCGTCACAGTGCCCACACTGCATGTGGGCATGCTCttctccgcctgctgctggtatCGGGATCCGCATGGACTCTCCTGGATCGAGTACTTGCATACGGGCGCCTCGAAACTCTGGTACGGCATACCCGACGACCAGAGCGCCAACTTCCGAGCCGCGCTGACGACGCTGATTCCGACACACTGTCAGAACAAGACGATCTGGTTGCCCTGTGATACGGTGATGGTGCCGCCGCACATGCTCACGGATCGAGGCGTCTCGCTGTGCCGCATCGAGCAGAAGCCTGGCGAGTTCATTGTCGTCTTTCCGCGTGCCTACACCTCGAGCCTGGCCACCGGCTATGTGGTCTCTGAGAGTGTCTACTTTGCCACGATGTCGTGGCTGGACTTGGCCAAGGATGACTTCAGGGATATACACGAGAGCTGTGAGCCGGCCATGTTCTCATTGGAGCAGCTGCTCTTCGCCTTGGGCTACGACCAGCGCGTCAACTCGGACACactgcagcagatgctgccCATGCTGAACGAGGTCTGCGAGAAGGAGTCCGCCGCAAGGGAACAGCTGAGGGCGGCTGGCGTCACATCCACCGAAAAGGTGCAGGCGGAGAAGGGCCAGAAggccaagaagcagcagcaaccgccgCACAAGTCCatcgagagcgagtgcgatCTGTGCCGTGCCAATCTGTACATATCGATGGTGCGGACGGAGGAGGGCAACGTCTACTGTCTGCAGCATGCGCTGAAAAATCTCAACAACGGCAACATTCAGGCCAAGCAATGCAAGCTGATCTACGCCTACAACGTGGACGATATACAGCAGCTGAtccggcagctgcaggagaagaTCAACCACAAGGCGGCGGTCAAGAAAAAGtag
Protein Sequence
MVVSKDNKRRRKETETPPTSSSAAAAAAVAAAANVALAVESSPEMPKRTKVQAQRKFAQGQSAPSSAGGVYSAANVAAAAAAAAAAGSGPSTSADSHQPPIEILPNKCPKPQDFLTFLCFRGTSALPAHLDYLNQGKSKANDVPPSSSDNNNKKKTNSSSSNNKKKRGRPAKAAAAAGASPGKAGREVLQPTPASSDKIEAATPPVLLAGAVRKRAEVITEGNRRGARRTETLKRRSNRAANNKDKDKEKDEEQQQQQHSIADAEEEQPDEDEEDDDEFFSAHDASSRNGAAGDETLSKSDQIHSNAKRERGQMTRKSAAAAASAATAESPVSTVEKDKDKDKDKDKKKEKAPVKRLRQRESPIFIPSPESSGRMTRQRAFFEPVKVLPKEEQHQAEEEQKPDRKEDKQLAEPSKQSEAPQQQQQQLTKEKTNSSIYAKDAAKQQQQQLENGGTASEQQKALNVFDFSSDDEQPLAKAIKLKKGAKKGSTSTSANATVTAAAPATARGRKSAASAAKKQQQQQQQRVEEKDKEKPVEPLAEQPPNKAKRGKALKKKAEEEPEPEAEAEEEEQTPPSPKKQSNSSSSNNNARPVRRQAQAKAGKAQAQAAAERSSSPSPQRSQRPSRKTKEAAAIYMGIIGHKLQLADDEEDDLSLDSFPEIPNVKQMEKIEKEIKKNAVGKKSPKPVAAAAGAGAGAAAAANAEPAAGNSSAAAAVAEQPESTVAAATAAPPPRRGRPPKQAKGMAAAAAAAPAAATVKPQIEGMLVKKGALALAKAKSEQQQKQQKVDSDAEEDFLINEELNETKRKLEKSFSDSDDEPLAIKVPTSSTATTTAAASTPTAKEASTSSSSKVETTAAAVAAAAATTITTTPPATPTVTAPTAAAAASTAATVASVTAVKPAAATTPTTAASLNCTPPKLSATNLGLGAAPPTTQLTMLPLTAKPTPFSISPPSYAPTAAAALKAMEKKSPVPTSKILNVPATYALPGAGPGLGSVGVGVGFVKTSSYLPQASPHYHTPYVRPSTFGAGSKTPQQQATAGALTTTASTVVASPLKYQTPPTTYPPPIEAYQCPKINPNFLTPKYDRSSVLPRSNNNNSSSGGIVVGNSSSISTSISNSFTAPTAASRASLASLSTPSMAKSVLPSPVVSQTQSLNLSISSTVASTSAAAAAAAAAASIQQQQQQQQQQQQQQQQQSTSQQQLLAANTSQPAAQGNSNSSSNNNNNNNNNNNNNAADPLKDEIGSILAQATLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEGYFGDQLTSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDYDDSLRPQQSQTPPGPTRDDKESTSFSSSSNKTRGELGKSECAWSAKGPSLKATPVLVSAAAAAAANRKDAETESETLDFEKCVSTPVNLSQKSQLEPVVSEKKLPEKKGKNAASNSAKAAATIATAAAAAAASSKRNAAATPTTSATPPPPSKQKAGNKRNAAATAASSSASNTPASQATRNAAAETTTTTTTTATTPTKRTPVYQSKAKAQAQSDNNNKQQQSQQQQQQQQSAEKAATTSVYAFGKDEDTATATATVAAAAAAGKGANRRRNAADAEAATPPPALSERSPTKKRAAAAAAAAATAVQLTLSPSEKLESKSKATGAAAARNAKKQQQKQAAAASAGGDSDAEGATFYIPLLQGASGGESGIQGVAVKLGREGPDGPNQKVVMQATLVTKAQMDTNSKPLPDNELVKTLLNAATTSNDATVGAAAAATATAATGTGTGTGNSLKASTSTAAAAATGSSLVRVNSNSSLFSGSAKSRTAATAASAAAAAAAASSALAKKYKDDTPIKMANNTAFPRHDDPTQMVEAPIFKPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHAPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEDMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRFVNSTESVSNEEDDVSTDEDEESEEEIDGVSMECIVKGRSMPLSQFYRIARNTMALWFKSTDPTVNEVEADFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNAGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTTLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNSDTLQQMLPMLNEVCEKESAAREQLRAAGVTSTEKVQAEKGQKAKKQQQPPHKSIESECDLCRANLYISMVRTEEGNVYCLQHALKNLNNGNIQAKQCKLIYAYNVDDIQQLIRQLQEKINHKAAVKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-