Zafr013001.1
Basic Information
- Insect
- Zaprionus africanus
- Gene Symbol
- -
- Assembly
- GCA_018151435.1
- Location
- JAECXB010002310.1:8432961-8434681[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-16 3.4e-13 48.9 0.0 2 45 374 417 373 417 0.95 2 3 0.013 35 4.1 0.0 27 37 446 456 442 461 0.89 3 3 3.5e-19 9.4e-16 57.1 0.0 2 42 483 523 482 525 0.95
Sequence Information
- Coding Sequence
- ATGAATCATCTAAAATGGATGGGTCACTCGTCCACAATAATGGATATACAGCGCGTTCTACTAAGCCAGCAGAGCAACAACCAAAGCTGCGAGGTCCTGCTGGTGGCAAAAGACGGTACAAGTGTGCGCGCTCATCTCTTCGTCCTGAGTACGTGCAGTGATCTAATGCGCAATCTATTGGTAGACTTACCCGTCGGGCAGGAGGCAACTGTCATCCTGCCCGACATACGCGGCGAGCTGCTGGAGAGCATGTTATCGTTCATTTATATGGGCGAAACCAGCCTGCCCTCGGCTCTGCTTACTGAATTTCTGGAAGCCATCAATCTATTGGGCATCAAATCGGCCATTAGCTTCGAAACCAATCCCACTTCCATGAACACCTCGAATATTAGTGGAGCAATGGCGGTGGAGCAAGCAAAATCAATAAGCGGCTTGCAAATCGCGAATACATCCATAATGGAGGAGGAGGAGGAAGATGCCAACGTTGTGGTCGGCAAATTAGAAATGGCCAATACAGTGCTAGGAAATCCACAACAGCCGCAGGAGCAGGTGGCCAGGCCTTTGGAGTTTCTCGACGTATACAGCGATCAGCCAAAAATAACATATTCCATTGAGCACATGGGCGGCACAACGAGTGGCAATCAGTACATATTGACGGAGAACACGGGCACATTTACCATAACGCAGTCAGCGTCGTCGGTGAACAAGCTGGGAGTACCAGCTGGCACAGCTGTGGTGGAGCATGTTGGCGGAGTGAGTGTTGGTGTGGCCGGAGAGATGGCCGATGAGGATGTGGAGGCAGAGGTTACAGACGATCACGATGAGTCCGAGTCACAGTTGATTGAGGAGGAGTATGTGACATCGGGTGGGCCCCTAATAGAAATGAGCACAGATGCGGATGTTGATATGGCTGAGGAGGCAATGCACGAAGAGGATGCTGGAGACGATGACGACGAAGAGGAAATGTTGGATGTGAAACCTCGAAAATCTCAACTGGATATGAAAATGTTGAAAACAAGAGTTCGTCAGCGTTCACCGTCCTCGAAGGCATCAAAGAAAATAATGACAAAACAGCATCAACAATGTGCAGCACTCAAAAAGGAATTCAAGGATGACATCAATGACGCCCTTGAATTGGCCGCAGATGCAGTTCTGCACGAGGGACTTAGTCTACAGAAAGCTGCCGATCGTTACGACATATCAAAAACAGTTCTATGGCGACGAGTGCGCTCGAATCCCGCATACATGAGAATAAAACGGGAAAAGCCTTCGTTGGCGGAGGCGTATGAACGCTTAAAGAATGGCGACTCTTTGAAGAGCATTAGCCAAGATCTGAATATACCTATGTCAACGTTACATCGTCACAAGGTTCGGCTGGCGGCACAAGGTCGCCTGCCCGACTTCGTTGCCTGCCGAAGGCGGGACAGCACTCCGAAAGATGAACTTCGGGACAAGCTTGCCAAAGCGGTGCATGCCTGCATCAATCAAGGCATGTCACAGAATCATGCAGCCAATCTCTTCGAAATCCCCAAGAGCACACTCTGGCGGCACTTACAGCGCCGCGTCACAGAAGCTGAGCAGAAAGTCAAAGAAGAACAGGAAGACGACGATGAGGAGGATGCTCTTAATTAG
- Protein Sequence
- MNHLKWMGHSSTIMDIQRVLLSQQSNNQSCEVLLVAKDGTSVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTSMNTSNISGAMAVEQAKSISGLQIANTSIMEEEEEDANVVVGKLEMANTVLGNPQQPQEQVARPLEFLDVYSDQPKITYSIEHMGGTTSGNQYILTENTGTFTITQSASSVNKLGVPAGTAVVEHVGGVSVGVAGEMADEDVEAEVTDDHDESESQLIEEEYVTSGGPLIEMSTDADVDMAEEAMHEEDAGDDDDEEEMLDVKPRKSQLDMKMLKTRVRQRSPSSKASKKIMTKQHQQCAALKKEFKDDINDALELAADAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLAEAYERLKNGDSLKSISQDLNIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKAVHACINQGMSQNHAANLFEIPKSTLWRHLQRRVTEAEQKVKEEQEDDDEEDALN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00610763;
- 90% Identity
- iTF_01552554;
- 80% Identity
- iTF_01548959;