Yseq007797.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000232.1:43661-68415[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0012 0.12 14.0 0.5 1 21 343 363 343 364 0.95 2 17 0.0082 0.78 11.5 0.7 2 23 425 447 424 447 0.95 3 17 1.2 1.1e+02 4.7 0.3 3 20 487 504 486 506 0.84 4 17 1.9 1.8e+02 4.0 0.7 2 19 512 529 511 534 0.86 5 17 0.00046 0.044 15.4 1.1 1 23 542 565 542 565 0.95 6 17 0.055 5.2 8.9 0.1 1 23 631 653 631 653 0.94 7 17 3.7 3.5e+02 3.1 3.4 3 20 840 859 839 861 0.92 8 17 0.6 57 5.6 1.5 1 21 905 924 905 925 0.91 9 17 0.35 34 6.3 0.6 3 20 933 950 931 952 0.92 10 17 3.6 3.4e+02 3.2 0.1 1 20 992 1011 992 1015 0.90 11 17 0.026 2.4 9.9 0.2 2 23 1267 1288 1266 1288 0.96 12 17 0.074 7 8.5 1.5 2 23 1425 1446 1424 1446 0.96 13 17 0.00036 0.034 15.7 0.5 2 23 1462 1483 1461 1483 0.97 14 17 1.2e-06 0.00011 23.5 4.0 1 23 1489 1511 1489 1511 0.99 15 17 0.25 23 6.8 2.6 3 23 1518 1538 1516 1538 0.96 16 17 0.026 2.5 9.9 1.0 2 23 1545 1567 1544 1567 0.97 17 17 0.00022 0.021 16.4 1.2 3 23 1609 1630 1608 1630 0.97
Sequence Information
- Coding Sequence
- ATGCCTGCACTAGTACCTTTCACCATGAAGGTAGAGGTGGATTCTGGTGATGACGACGATGATTGGTGGATGGAACTCGAAGAACAAGCGAAGAAAGAGAAAGATGCTCAAAACGAGACGCAACCTGATGAAAATGTTGTAGTTAAATGTGAACCTCTTGAAGGTGATGCCAATTCATTACACAAAGAAGACAATAAAACAGATGGATTAGAACCCGAGGATTGGAATTGTAATAGTTATATACCTAATGAACATACAGAAAAAATAACAGTAAAATCTGCGGCAAAACTGTTTGAAAAGGCTACTGATAAATGTGAAAGCCCTCATTGTCATAAAACAGATATCAGAACATTTTTAGATCACAAAAATAATGAAGCGGATCCTCAGCCAGAGAAAATACCTGGTAAACCCAGAAAAACACTGCAATTTGAGTTGGTTGCTAAAGGATCTAAAGAATTTGTAATCTCTAAAGTAGAATATACACCTGATCAATTTGAAATTCCTCATTGTCATAAAACGGACATCAGAACATCTTTAGATGACAAAAATAATGAAGCAAATCTTCAGCCAGAGGAAATACCTGCTGAATCCAGAACACCGCAGTTAAAGTTAGTTGCTAAAGTATCTAAAGAATTTGTAATCTCTAAAGTAGAATATACACCTGATCAATTTGAAATTCCTCATTGTCATAAAACGGACATCAGAACATCTTTAGATGACAAAAATAATGAAGCAAATCTTCAGCCAGAGGAAATACCTGCTGAATCCAGAACACCGCAGTTAAAGTTAGTTGCTAAAGTATCTAAAGAATTTGTAATCTCTAAAGTAGAATCTAAACCTGATCAATTTGAAATTCCTCATTCTCATACAACGGACATCAGAACATCTTTAGATGACAAAAATAATGAAGCAAATCTTCAGCCAGAGGAAATACCTGCTGAATCCAGTACACCGCAGTTAAAGACGAGGAAGTCGAACATAGTTTTTAAAGATAACTTGAGAATCTTAGAGGATGGTCTGGAAGTATACAAGTGTCTGAAATGCAAAACGATGTTTAGCAGTGCCGCAGATTTGGAATCGCACAAGAAATCGTTGATGACTTGCGTTTGCGAAAAGACTACGCCTTGTTTTGAGATGACGAAACATCAGGAGAACTGTAAAGACTACCTTGAATTCCATATATTGAAAAACTGCCAGTGTGGCTGGAATTCGAAAATTAATAAAGAACCGCACAATCCGAACTGCATTTTTAAATCGGAAAGTATGAGTCAGCAATGCCCAGTTTGTCTTCAAACATTTCCAAGTGCTCAAACTCTTTTACACCACCAGACAGTTTTCCACACGGTCAGATCTGACGAGTTCATGTTACAATTTCCGAGGGTTTGCGTGCTTTGTTCTGAGTTATATGTTGGGGTTAAAATAATGCACTACTGTCCAAAGTTAACCGATGAACGCAACTGCAAACAATGTGGAAGGCAGTTTCAAAACGACCTGTTTCTAAGACTCCATTTGATGGCGTATCAAGAGAGCGTCCCTTGCGAGACTTGCGGGAAGATTCTTTCAAGAGCATGTCAGCAAGAGCAACACAATGCGTTTCAACACGTTTCTAGGCTCCGGGTGCTTTATAAGTGTAATATTTGCGGGCAATTGTTCCCGAACGAGTTTAATTTAAGCAAGCATGTATTTCGGTTCCACGAGAAAGAAAAGTCGATGTACGTCTACACGAGATCGAGGcttcttctagtaCTGAAGACAAAGCAAACCGTGCCAACTGGTCAAACTGGAAAAAAAAACGCTATAACGACTTACTACGACAACGAAATTAAAAAACATTTGAACACCTTGGCAACTGCTATCCGACATAGAATCTTGCGTGATACTAAAATTGTATACGAATGCAAACTCTGCAAGACTTCCGGGACAAATATATCTGACTTCATAGCCCACCTCGTCGGCCATAAAGAGATCATGATGACCTTCACCACTGATTACTCGATCAGTCCCAAAATCACTGCAGTGTACGTAGCGCCTGATCCCAGCAAGGAAACTATCGTGAAACTGACTAGGAGATTCCAAAAGAATATTTACGATGTCGTCGAGAAGAGCTTAGGCTCTTTAGACACAAGCTCTCCAAACAGAAAAATCATCTCCTACAAATGCTACCTCTGTTTAATGTGTTGGGAGCATTACAACGGGTTCAGAGAGCATTTGATTGAGCATACCAAAAAATCAGATAAGGAAATATACATCTCATCGGAAATACTGAACACTTTTGTCTCCATAATAGCGTTGCCGAACTCCAAAAGCATATATCCGGAAGATTTGCCTATAGTCAGCGAAAATTGCACGGAGGAAATTTTCAAGTGTCTTCAATGCAAGGAGATTCATTTGTCCAGGGAAGATTTGTGTAAACACAAAAGCAGAAAATTTGGGTGCACCGGATGTCCATTTAGAGGGTCCTGCTTCGAAGTTAAAGCTCACGAAGGGAGATGCCGTGGATATTTCGACTACGTGGATTGTAAGACTTGCGAATGCGGGGTGATTTGCAAAGACAAAGAGGAGATGAAACGGCACCGGGAACATTGCGATCGCAAGGAAATAGAGTTCAGATGCATAGTGTGTTCCTCTCAGTACCCAATGAAAGAATTACTAACGATGCACCAAGTTGCGTGGCACAACGTCAGGTCTGATGAGTTCGTAGTCAATAGGCTTTACACGTGCCCGCTTTGCTCAGCGGTCTTCGTTCCGAGCAAACTGAAATATCACCATTGCTCGATGCGAAAAGACAAGGTGCACTGCGAATGGTGCAAGAGACAGTTCCAAAATAAATACTTTTTATCCGTCCATGCCAAAGCTTATGAGAGAAACAGTGATATTCGTTGCGGGAAATGTGACATGGCACTGGAAAGTGAATGCTTGAGAGATGAGCATGAAGTTATGTGCCCTGAGAGCGGTGGCACCGCCATTTTGGTTTTTAAATGTAACCTTTGTAAAGATATGTTTGTAAATGAACAGGCGGTAGTTAAACATGTGCCGATGTTACATACCGAGGAGGAACTAGCGGATTTCGTGTACCATTATAAAAAGATGATTGTACCTAAGCATGAGGTCGTCATAATAAGAGATAGCTTCGTTTTCTATAAATATGACCAAAATGTTAATAAATCCCTTAACCAAGCTTCCACCTTCGAAGACAACATCGATTATGAGAACTCCATCACCCAATCTTTGGTCGCCAAACCTGAAGTCCCCACTAAAGACAATACTGAAATGGTAGCTGTCAAGGAAGAAAAAATAGACGACCAACACATTACAGAAAACGTCCCTGATATACCTGACGACACATCAGAACCAGATGAATTCAGACTTGTGATTAAGGAAGAAGTTATCGACGAACCGATGGAAGAAGTGTTTGAAGCGTCAGAAAATTCCACGGATATCAAAATAGATGAAGACGTCGTGGTTAAACTGGAAGTTAAATCTGAACTAACGGAGTTGGAAGAGATGATGGTGATGCACGAATACCAAAACGAAAAGCAGGAGGGCGAGGAAACTATTGACCAGTTCATAAAAAACCATTCGGAAATAACAATGATGGAAATAGAACCAGAAATATTGTTGAAACGCCACCAAATCGCCTCAGAACACGCCAAAAAAGCTTCGAAAATATACACGTGCAAGAAATGCAACTTCTCTGGCATTCACAGTTTATACAAATACCATAAAGAAGAATGTACTCGGTTTAAACCCAAGAAAAGACCAATACCGACAAACGGAGTCGAAAGATTGATGAAAATCGTCTGTTCCAAATGTGAAAAAGAATTCGACGATTTAATAATGTATCTAAACCATTTAAAATACCATAACGTACCCAAAAATGTCTGCCCGGAATGCAAAACCGATTTAGAATGTCCAGCAAAACTGAAATCCCACGTCATACACCACCTTAGAACTAACTTCGTAAGAATGTACATCATAAATGGAGCGGACACCGATGCTAAAACGTTAAAAATATTCCATTGCACCAAATGCAAAGACGTCATTGAGCGGCACTGCTTTTTCCAACATTGGGCATCTCATATCAATTTGGACGAGGTCAAAATCAAAACGTACTCCAAGGAGACTGAAAAAGTAACAGAAAGTGCGCCAAAACCCGAATTGCAAGATGATAGCAATTCAAGTTTTAGTCAGAATCTAGATCCGGAATCACGAAAGTATTTAATACAAAACCTCCTGATCGATTCTGTGAGGAGAAACTCATTTAAAGCGAAGACTTGTCTATTATGCGATCGATTATTTGGTAGGAATCATGACGCTAAGCGACACATGATCGAGCATCTGTTTGATGAAGCGCGAGCGAATAAAGTCGCTAATGATGGCCTTAAGTGTCCCATTTGTTCGGTGATCTACTCAACGAAGGACGTGTTCAAGAAGCATATGCGCGACCACGCCTCGCTGCCGATGTACCAATGCCACCTGTGCGACAAGACGTTCAGCGACTCTAGCAACTTCGCCAAACACAAGAAGGTGCACGGTTTGAGGGTGCTTTTCTGTGACATCTGCAGCAGGAAGTTCCAGTGCAAGAAGCAGCTCGAGGTCCATATCATTAAGCACATGCGGAAGGTCCTGAAGCAGTGCGCGGAGTGCGCCTTGGAGTTCTTCTACGAGTCGCAGTACAACAAGCACATGAAGAAATATCACGGGCCTGAGGGCGTTGCGAGCTATCAGTTCGGCTGCGGCGTCTGCAAGCGACGGTTCACCGCTCTGAAGGATAAGTGGGATCATGAGTGGGAGGTGCACAAGGAGCGTAAGACGAAGGCCGACTGCCCGATCTGCGGCCTCAAGTTCCGGAAGTTCAGCGACGTGAAGCACCACATCCGGTCTGAACACAACATCCATGTATCCAAGTCGAGCTATAAGTTCTGCAAACTGCTGGACACGATCAGCAAGTACAACGTACCTGTGGAAGTTGTTGAAGAGTTGCTGCAGAAGGAAACGAGTCACGATGGAGCTGGGAGTAGCTCGTAG
- Protein Sequence
- MPALVPFTMKVEVDSGDDDDDWWMELEEQAKKEKDAQNETQPDENVVVKCEPLEGDANSLHKEDNKTDGLEPEDWNCNSYIPNEHTEKITVKSAAKLFEKATDKCESPHCHKTDIRTFLDHKNNEADPQPEKIPGKPRKTLQFELVAKGSKEFVISKVEYTPDQFEIPHCHKTDIRTSLDDKNNEANLQPEEIPAESRTPQLKLVAKVSKEFVISKVEYTPDQFEIPHCHKTDIRTSLDDKNNEANLQPEEIPAESRTPQLKLVAKVSKEFVISKVESKPDQFEIPHSHTTDIRTSLDDKNNEANLQPEEIPAESSTPQLKTRKSNIVFKDNLRILEDGLEVYKCLKCKTMFSSAADLESHKKSLMTCVCEKTTPCFEMTKHQENCKDYLEFHILKNCQCGWNSKINKEPHNPNCIFKSESMSQQCPVCLQTFPSAQTLLHHQTVFHTVRSDEFMLQFPRVCVLCSELYVGVKIMHYCPKLTDERNCKQCGRQFQNDLFLRLHLMAYQESVPCETCGKILSRACQQEQHNAFQHVSRLRVLYKCNICGQLFPNEFNLSKHVFRFHEKEKSMYVYTRSRLLLVLKTKQTVPTGQTGKKNAITTYYDNEIKKHLNTLATAIRHRILRDTKIVYECKLCKTSGTNISDFIAHLVGHKEIMMTFTTDYSISPKITAVYVAPDPSKETIVKLTRRFQKNIYDVVEKSLGSLDTSSPNRKIISYKCYLCLMCWEHYNGFREHLIEHTKKSDKEIYISSEILNTFVSIIALPNSKSIYPEDLPIVSENCTEEIFKCLQCKEIHLSREDLCKHKSRKFGCTGCPFRGSCFEVKAHEGRCRGYFDYVDCKTCECGVICKDKEEMKRHREHCDRKEIEFRCIVCSSQYPMKELLTMHQVAWHNVRSDEFVVNRLYTCPLCSAVFVPSKLKYHHCSMRKDKVHCEWCKRQFQNKYFLSVHAKAYERNSDIRCGKCDMALESECLRDEHEVMCPESGGTAILVFKCNLCKDMFVNEQAVVKHVPMLHTEEELADFVYHYKKMIVPKHEVVIIRDSFVFYKYDQNVNKSLNQASTFEDNIDYENSITQSLVAKPEVPTKDNTEMVAVKEEKIDDQHITENVPDIPDDTSEPDEFRLVIKEEVIDEPMEEVFEASENSTDIKIDEDVVVKLEVKSELTELEEMMVMHEYQNEKQEGEETIDQFIKNHSEITMMEIEPEILLKRHQIASEHAKKASKIYTCKKCNFSGIHSLYKYHKEECTRFKPKKRPIPTNGVERLMKIVCSKCEKEFDDLIMYLNHLKYHNVPKNVCPECKTDLECPAKLKSHVIHHLRTNFVRMYIINGADTDAKTLKIFHCTKCKDVIERHCFFQHWASHINLDEVKIKTYSKETEKVTESAPKPELQDDSNSSFSQNLDPESRKYLIQNLLIDSVRRNSFKAKTCLLCDRLFGRNHDAKRHMIEHLFDEARANKVANDGLKCPICSVIYSTKDVFKKHMRDHASLPMYQCHLCDKTFSDSSNFAKHKKVHGLRVLFCDICSRKFQCKKQLEVHIIKHMRKVLKQCAECALEFFYESQYNKHMKKYHGPEGVASYQFGCGVCKRRFTALKDKWDHEWEVHKERKTKADCPICGLKFRKFSDVKHHIRSEHNIHVSKSSYKFCKLLDTISKYNVPVEVVEELLQKETSHDGAGSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -