Yseq017921.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000577.1:88072-95837[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.52 49 5.8 1.0 1 23 55 78 55 78 0.95 2 21 0.13 12 7.7 2.4 1 23 85 108 85 108 0.97 3 21 6.5 6.1e+02 2.3 5.3 1 23 182 204 182 204 0.97 4 21 0.0022 0.21 13.2 1.0 2 23 210 231 209 231 0.97 5 21 0.75 71 5.3 1.4 1 23 237 259 237 260 0.95 6 21 0.065 6.2 8.6 3.8 2 22 505 525 504 525 0.95 7 21 4.5 4.2e+02 2.8 1.0 1 23 623 645 623 645 0.82 8 21 0.68 65 5.4 0.3 2 23 772 793 771 793 0.96 9 21 0.13 12 7.7 0.9 3 23 869 889 867 889 0.97 10 21 5.5 5.2e+02 2.6 0.5 1 23 897 919 897 919 0.93 11 21 0.11 11 7.9 3.5 1 23 956 978 956 978 0.95 12 21 0.00064 0.06 15.0 5.4 1 23 986 1008 986 1008 0.99 13 21 0.21 20 7.0 1.6 1 23 1091 1113 1091 1113 0.98 14 21 0.47 45 5.9 2.1 1 19 1169 1187 1169 1191 0.93 15 21 0.033 3.2 9.5 0.5 1 23 1197 1219 1197 1219 0.98 16 21 0.026 2.5 9.9 0.8 1 23 1287 1309 1287 1309 0.93 17 21 0.06 5.7 8.7 2.6 1 23 1315 1337 1315 1337 0.96 18 21 0.0087 0.83 11.4 2.6 1 23 1429 1451 1429 1451 0.97 19 21 0.00022 0.021 16.4 1.4 1 23 1457 1479 1457 1479 0.99 20 21 0.61 58 5.6 2.3 3 23 1572 1592 1570 1592 0.95 21 21 0.021 2 10.1 0.9 2 23 1604 1625 1603 1625 0.97
Sequence Information
- Coding Sequence
- ATGCTACAGCAGATGTCCTCGCCCTCGTCGAGCACACAAGTCGGCGAGGTCGCTACTGTTGTGCGCTCCGTCGAGGGCCGCGTCCTCGGTGACGCGTCTTCAGAGGCCTCTTCGGACACTGCAGAAGATTTTGAACTACCCCAGTGCAAGATAAGAAGAAACTATAGTTGCACCAAGTGCAATTTTTTCACACAGAACCCACGCGCCTATCTCGTTCATACGCGTGATATACATTTCGAAAGGTTCAAGATTTATGACTGTCCCAGCTGTGTTTATGCTTCGAGACATCATCAGAAACTCATACGGCATATAAAAATGCTTCATAGTGACATCGCAATAGCGTCAACTTCTAAGGAAGAGTTAGAACACCCCGCTTCTGCAGATGTCACAGGGCCGTTAGAAAGAATAGAAGATATGTTAGAAGAAGTTGAAGAAACTGAAATGGATGGGGATATCGATGAAGAGTCAATCGAACAAATTGAAATTGATGCTGATGACGTTCAGGCTGACGAAAATGCAACTCAAGGAAAAAAACAAAAGTTTTTTTCATGCAGTAAATGCAATTACGTGACACATATAAGATCGCGGTACACAAAACATGTAAAATACCACTCGATGCCTATGATAAAGTGCACGATGTGTGACTTTCGTACGCCGTATAAATGGAATCTAGACCGTCACATGAAAAACCATGGCGGCACAGGCAGTTTCCAGTGTTCCATGTGCAACTTCACGGCAGATATCAAGCAAAGTCTGACGGTGCATGAGATGAATCATCACGCGACTCCAATAGGTCAATCGTTCTCGAGCCGCCGACGCAACCGGGTGGGTGCCAGCGATGTGACGCTCACAGACGAAGCAGTGAACGCACTCATTACCAGAGAGGAGGAAGGGAGCGGCGACTCACGATCCTCGTACTCGGCAGCGGATATCGGAGCACACCTTGCAGACATAGAGATGATCAGCTGTAACAGTGGATCCAACGACGCTACTGCTGTAAGCCAAGACAAAATGGACGACTCGCGATTACCGGCAGACACGCCGCCCAACCAACAGTTGTCGCCCGCAGCTGACGAATCTAAGCTAAACAAGCAAAACCGTAGAGCTCCACGACCATTACCACAACTGATTCCACTGAATGCTTCTACACCAAATACAAACAAAACAACGGGAGAACCACCACTAAAAAAAATAAAGAAGATGTTAAATAATGTCAACGACAAAATTGAGACAAATTCCGTTTTGAACTTACCAGCTGACATTTCTTTGATTCCAGTAAATAATCAACCAACAGTCACAAAAGAAGCACCGCCTCGCAAGAAAAATAACTCGTTCTTCGACAAATTGAAAGAACGATTGCTCACTGAAACTGGAGAAGACGGCTCACTCGTATGTAAGAATTGTGGTTTCGAAAGCAAATGTTTATCAGAACACTCAGTACACGAGAAAAATTGCACACCGCAAGCAAACAAAGTAGTTACCAACACTCCAACTCCTAGTCTTGGCTCAACACGCTGCCAGAATTGTCGACACAGATGTAAATCAAGCGCTGATTTAAAAGTTCACATGCAAACTTGCGGAAACAATGAAAAACCGAAAGAGCTACAAGAAACCGAAGTAAAACACACCAACAGCGAGCCTTCGACTTCGAATCAAATTAGAGAAACGCAGCCACACCCGATGGAAAATGTTGTGTTTGTGTGGAATAATATAAATCCTGATGTTAACAAGTTCGAGATGCCTCTAGACATAAACATCAACGACGACTCCACTTTACCTGATAATAACAGAAGTTATGACCCCGAAAATGGTGATGAAAATGAAGGTATGAACTTATCGCCATCTCAAGCAATAGGCAAAAAGGTATTTAAATGCCCACACTGCCCATTTTGGGCATCAACTGCTTCAAGATTCCATGTCCATATCGTCGGACATTTAAACAAGAAACCATTCGAATGCTCTTTGTGTAAATACAAGTCCAACTGGCGATGGGATATAACTAAACACATCAAGCTTAAGTCAGCCAGAGATCCTATCCATAACAATGCTAAAGTTCTTATGACAGATGAGACCGGAAGAAGAAACTATAGCAAATATAACAAGTTCTTAGCAATGCTAGTTTTGAACGAATCTGGACAAAACGAATTTCATTACTTAGATCAAGAAGCGTCAATGGACGTTGATGACTCACTAAATGAAATTAATGAAGGTGGCATGGGTACATCATTCGACATGCAACCTCTTGATTTACATACTCAAAACTACAACAATAGAATTGAAAACGATTTACGAAAGCCAAAGAAAACTTTATGGAAATGCAAAAAATGCAATTACAGGGATCCGTCAAAAGAAGCGTTATTAGAACACGTTCGTGAACATTCGAGACCAAGTGATGGAAGTCAGGACGACCATAACCTGCGAAAACCTGAGCCCAAAGACCCAGCGGACTTGGCATATCGCTGTGGACACTGCAATCAACTATCCAACTGGAAGCACGTCATTCAGAGACATTGCCGATTGAAGCACGATGGAGTTATCAAAGTTATAGCGATAGAAAAGCCGAAGCAAGATCCTTCACACGGGTTGACCGATTTAAACGATTTCTGCAAGATATGCCCATTTAAGTCAAACAATAAAAATCTGATGGAGTTACACATGCAACAGCACACGCCTTCGCCGCAATCTATTTTCAAGTGCTATTTTTGTCCATATTTCGTGAAAACTGTAAACGAATTGCCACAACATCTCATTCTACACGGAATTACGGATCCTGAGGAGTTTATGGCGAAGCAAATAGGAGGCAAGTCCCCGTCAACATCAGCTTCAACGGAGCAACCCGCACCATCAACGTCGACGACGAAACGTCACAAATGTACCGACTGCCCGTACGAGACAAACAGCAAGTCACAGTACATGTACCACGAGCAGTTCCATCGGCTTCCGGCTGACACTCCCTATAAGTGTCAAGAATGTAATTACAGCGTCTCCAAAAGGCACCTGCTACACCAGCACATGAGAGTTCATGGAATTTTCACCAACAAAAAGGATGCTGAATCAGAAGCAGAAGCTTCAATGTCACACGGCAATCCAACCGAAGCTAAAATGGAAGAATTTGATGAAGAAATTCCTTATGTGTGGGTCGCAGCGAAAAATGAATTTCATAAAATGTACAAGTGTCGCTACTGCTCTTATGTAAATTCTCAAAAATGTAAGATCCCCAATCATGAAAAAATTCATTGCATACTGTTTGAAAACAGTGACATAACGGTTTACAAATGTTTAGAGTGCAAATTCACTTGTGATAACGCTGGGCGATTGGCAGAACATTCCAAAATGCATGGAGAAATATATGGCCGTATTTATTGCCCTGTTGATTTAGAAATTCCTGATGAAGAACAAATATCAAAGCTACGCAAACAGATAGAGGATGAAAAGATTGCTATTATGGAAGGTTTGGCTAAAGATGATCCAACATCAAAAGATTGTGAAGAAGGAAAGATTCTGTACTTTTGTCAAAAATGTCCATCTCGGTTTTTCTCCGAGAGTGAACTGAGAGTCCATGACAAATTCCACGACTTATCGTTAACATACAGATGTAAAAGTTGTGAATTCTCTGTACCTTCCGAAAATCAATTGACTACCCACATTTTCGTCCACACGGATGATTATAGAACCAAGACGAAAATGCTCAGAATGATACATGATACTGATCCCGATCACAGAGAACCAATTCTAGAACTTGTGCATTCGCCTACTACTTCAGAGATCACTTGGATAGTGTCATCTATATGCAAAGACTACGAACCGCCTGTGACGAATCGCAGGCCACACAACGAAACCAAGCATACACCTAAACAATATCTATGTAAAGAGTGTCCCGCTAAATTCTTCAAAACTTCTACATTAAACTATCACATGGGATTACACGGCGGCGATGGTGACCACAAATGTAAGAAATGCAGCTACGCGGTCAAGAATGTAGGACATTTGGCTAAACACGAACTGCTACATGAAAATGAAGGAAAATTATCTATGAGGGAAAATGAGTATGACTCTGGAGAAGATCTGGACTATAAAAATGTTCCGATATCAGGTACAGATTTGTTTCAACGAAAGACAGAGGCACAAAAAAGAGTTTTAACAGATAAGGACAAACTTGTGAAACCTAATGACCATTTTCCACCAGTGCTTCAGGCCGATCCGCAATTTGGCTATTTAATGCATGGTAATCCAGAGTTCGTATATCCAACATATTTGAAAAATGGGCGACAAAAGGAAAAACGGTACAAATGCCATAAATGTCCATCTGCGTTTGAGAAAAGAGAACAGTACAAAATTCATTTGTCTCTACATGGATCAAAACAACGTTACAAATGCGAACTCTGCGATTACTCAGTGAAATACTATGCGAATTACGTTCAACACATGCGGAAACATCAGATGAATGACGAAGCCCTGGCGGAGAGAAGGAAGGAAAATGGCGAGACTATCGAAGACGACGTTAGAGTGACCACTCAAGAAGACAGCACAGATAATATCAAGTTAGCTATTAAAACAATGCCGAAAGGCCTTCCAAAGAGTGATTTCCAGCAATTCTCAATCAGTGATCAACAAACACTAAGACTTCTACAGCGAAGAAGGTCTATTAATAGTTCTGCAAAGGAGAGTATTCCCGCCGAATCACCGCCAGCGAAAGATCGCAAGTTACATCTGTGTACACTTTGCCCATACACAAACCAACGCCAAGATGCCTTACAGAACCATTATAAACGACATGACAAAAATGATGTTAACAATGCAGGCTACAATAAATGCTCCTACTGTGATCTTGCTGTGGTGCAGTCACATTTTCTGCGAGAACATCTAAAAGCCCATTTCAGCTATCAAAAGAATTTAACGCCACAGTGCTTTGTCGCAAATGAAAATGTTACATTTTCAATAACTAAATTAGACGAAGAGAATGCTGATGTTAGCTGTTTTTTTGTTGAAAATGATAACAAAAATAATAATTTATGTCATGACGAAAAAATGTTTGTCCAAATGTCTACTGGAGAAATTGTCGTAGAATGA
- Protein Sequence
- MLQQMSSPSSSTQVGEVATVVRSVEGRVLGDASSEASSDTAEDFELPQCKIRRNYSCTKCNFFTQNPRAYLVHTRDIHFERFKIYDCPSCVYASRHHQKLIRHIKMLHSDIAIASTSKEELEHPASADVTGPLERIEDMLEEVEETEMDGDIDEESIEQIEIDADDVQADENATQGKKQKFFSCSKCNYVTHIRSRYTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGTGSFQCSMCNFTADIKQSLTVHEMNHHATPIGQSFSSRRRNRVGASDVTLTDEAVNALITREEEGSGDSRSSYSAADIGAHLADIEMISCNSGSNDATAVSQDKMDDSRLPADTPPNQQLSPAADESKLNKQNRRAPRPLPQLIPLNASTPNTNKTTGEPPLKKIKKMLNNVNDKIETNSVLNLPADISLIPVNNQPTVTKEAPPRKKNNSFFDKLKERLLTETGEDGSLVCKNCGFESKCLSEHSVHEKNCTPQANKVVTNTPTPSLGSTRCQNCRHRCKSSADLKVHMQTCGNNEKPKELQETEVKHTNSEPSTSNQIRETQPHPMENVVFVWNNINPDVNKFEMPLDININDDSTLPDNNRSYDPENGDENEGMNLSPSQAIGKKVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPIHNNAKVLMTDETGRRNYSKYNKFLAMLVLNESGQNEFHYLDQEASMDVDDSLNEINEGGMGTSFDMQPLDLHTQNYNNRIENDLRKPKKTLWKCKKCNYRDPSKEALLEHVREHSRPSDGSQDDHNLRKPEPKDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVIAIEKPKQDPSHGLTDLNDFCKICPFKSNNKNLMELHMQQHTPSPQSIFKCYFCPYFVKTVNELPQHLILHGITDPEEFMAKQIGGKSPSTSASTEQPAPSTSTTKRHKCTDCPYETNSKSQYMYHEQFHRLPADTPYKCQECNYSVSKRHLLHQHMRVHGIFTNKKDAESEAEASMSHGNPTEAKMEEFDEEIPYVWVAAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCILFENSDITVYKCLECKFTCDNAGRLAEHSKMHGEIYGRIYCPVDLEIPDEEQISKLRKQIEDEKIAIMEGLAKDDPTSKDCEEGKILYFCQKCPSRFFSESELRVHDKFHDLSLTYRCKSCEFSVPSENQLTTHIFVHTDDYRTKTKMLRMIHDTDPDHREPILELVHSPTTSEITWIVSSICKDYEPPVTNRRPHNETKHTPKQYLCKECPAKFFKTSTLNYHMGLHGGDGDHKCKKCSYAVKNVGHLAKHELLHENEGKLSMRENEYDSGEDLDYKNVPISGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFVYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEALAERRKENGETIEDDVRVTTQEDSTDNIKLAIKTMPKGLPKSDFQQFSISDQQTLRLLQRRRSINSSAKESIPAESPPAKDRKLHLCTLCPYTNQRQDALQNHYKRHDKNDVNNAGYNKCSYCDLAVVQSHFLREHLKAHFSYQKNLTPQCFVANENVTFSITKLDEENADVSCFFVENDNKNNNLCHDEKMFVQMSTGEIVVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -