Yseq025936.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000965.1:424220-427989[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0013 0.12 14.0 1.2 2 23 122 144 121 144 0.96 2 10 0.0007 0.067 14.8 4.9 1 23 171 194 171 194 0.97 3 10 0.0031 0.3 12.8 1.3 1 23 200 222 200 222 0.97 4 10 0.033 3.1 9.6 0.0 2 21 222 241 221 242 0.94 5 10 1.9 1.8e+02 4.0 3.0 1 23 250 272 250 272 0.90 6 10 6.9 6.5e+02 2.3 3.8 1 23 277 300 277 300 0.94 7 10 0.058 5.5 8.8 0.1 1 20 320 339 320 341 0.92 8 10 1.7 1.6e+02 4.1 1.4 1 20 357 376 357 379 0.89 9 10 0.0011 0.1 14.2 4.8 1 23 520 543 520 543 0.98 10 10 0.068 6.5 8.6 0.6 2 21 550 569 549 570 0.91
Sequence Information
- Coding Sequence
- ATGCCCTTTAACTGCAATGGAATTGAAGACGCGATCCAGGATACGCGGGAAAGTGCCGTGGAACCATTGGAAAGTGAGGCACCAACTGACAATGGCAATGCGAAAGATTTCGCGGCTAAAAACGGTTGCAAAGGTTTCGCGAAGGTGCCAATCGTTCTAGTGTCGCGTACAGACATTTCGCCTTACCTGAATAATATGAAAGTTTCTCTAGTTGAGAAACTGGACCCAGGTAAATCACTCGGTGATATCACTAATAAATATCCAATCAAACTAATTGACTGCAAAGTTCATGTGCTTAGGCATGATCTACATCAACTAAAATACGATTTCGAATTGACATACAACATGCTAGACATGTTTGTCACATGCAGAATTTGTAAGAAAAACTACCCGGACCTGAAGAAATTGAGAAACCACCAAGCCACTAAACATATGATTATATATGAGCCGAAGCCACAGAAAAGAGTATCATTCTCTGACCATGTCATCATTCACGAGGTCAAAGAGTACCACAAATGTAGGAAATGCACTAAAATATTTGAAGACTACAGATTACTCAAGACCCATATGAAGAAAGACCATAAAAAGCGTAAATGCTATATTTGTTACTATTGCACTAAGAGTTTCGTTGACCGAACTATATTTAAGGTACACATTAAGCTACACTGTGATGTATGTGGCGAATTGTTCCCAAACAAAGCTAAGTACATCGACCATAGACGTTACGTGTGCCGAGTTATAAAATTACATAAATGCGGAACGTGTAACATGGAATTCTTCAAGTTCATGGATTTAAAAGACCATAATTACGAACACTTGAGCACATTCTTTATATGTGACATCTGCAAAGACCAATTCCAAACTAAATGTGCCGTGTCACATCATATCAAATTTTTACACTCCAAGAAAAGGCCAAAAACGTTGTATGAAATAAAGAACATTGGCAGTGAGAGGTTATTTTTGTGTAATTTCTGTGAAGAGACCTCGGTCGATAAAGATTTGCTTGAAAAGCATGTGGAATTACTGCCAGATCTGTCTAACAAAGCGATGACGGGTTACAAAGACTACTATTTCTGCGATCAGTGTCTTAAGAAGTTTGATAAGGAACAAGAAATGTTGCAACACAAGTGGACACACTTCTTGAAGTCAAGTAACACTGACAAGAAAGTAAATGAAGAGCCAACGAGCAGAACTACTGAAAAAGATGCATCATCCAAATTGAACGAAAATATTCCTCTAAACAGATTTTTTAATATTCATAAAAAAATACCAGATAAATTTCTGCCCATAGTTGTTCTGACAAAGACGGAGTTCAATCCTGCTCCAGACAAAATTGTCGAAAATGCTGTTGCAAAGAACATTATCAATGATATTGAACCAGACAAAAGTATTGAAAACTTTGTTGATGTAAACAACATTATCCATGATCATGAGCATGATATCATCAATGATCATAACATTGATAATTCAAATAATGAGGAATATCAGGAAATAATCCCACAAATCTCAAAGAAAGCTATAGTCGACAAAAAAAGCAAGAAGACTTTACTATCCAGGCATCAGTGCGATCAATGTGAAAGATACTTCTCAACTGGCTACTGTCTCCGGCGACACATTCAGACAGTACACTGTGACTACGAGAATCTTAAATGCCATGTGTGTGAAGAAACGTTTGTCTGGCCATCACTTCTCATGACCCACAAGTGCATAAGAGCCCCCATCCCAGAGATGCCATTCGACGATGCCAGACCAGAAATACACTTTGATAACCTCAACATGATTGAGATGTTAAATCAACAAGCTGCTCAAGAATTGCAAGAATTGAATGGGATCGCTGAAGATGACTACATGAATTGCGTTGATTTTGAGATACCTGCTCCAATCGTTCAGCTCACGGAATATGAGAACAATGTCATACCAAACAATGTGTTTGTCAATCATGGACATGGTGTTTTGAATGGTAGTAGAATGGTAAATGGAAACACAGGTCTTTCAGTGGTAAGCCATAGTCCTTCAGTTGTAGGCCATAGTCCTTCAGTTGTAGACCATAGTCCTTTAGTTGTAGACCATAGTCCTTTAATTGCAGGCCATAGTCCTTCAGTTGCGGGGCATGGTTATATAATGTCTGAGCATAGTCCTACAATAGCAGGCCATAGTTATGCCAGTCATGGTCCCACAGCTATAGGGAATGGTCGTACATTAGGTAAAGACGTGGCCGCGCCTGTAAAAAGTGTAGGATATAAGGTGGTAATGCAAGAAGTACCAATTGAGTTTTAA
- Protein Sequence
- MPFNCNGIEDAIQDTRESAVEPLESEAPTDNGNAKDFAAKNGCKGFAKVPIVLVSRTDISPYLNNMKVSLVEKLDPGKSLGDITNKYPIKLIDCKVHVLRHDLHQLKYDFELTYNMLDMFVTCRICKKNYPDLKKLRNHQATKHMIIYEPKPQKRVSFSDHVIIHEVKEYHKCRKCTKIFEDYRLLKTHMKKDHKKRKCYICYYCTKSFVDRTIFKVHIKLHCDVCGELFPNKAKYIDHRRYVCRVIKLHKCGTCNMEFFKFMDLKDHNYEHLSTFFICDICKDQFQTKCAVSHHIKFLHSKKRPKTLYEIKNIGSERLFLCNFCEETSVDKDLLEKHVELLPDLSNKAMTGYKDYYFCDQCLKKFDKEQEMLQHKWTHFLKSSNTDKKVNEEPTSRTTEKDASSKLNENIPLNRFFNIHKKIPDKFLPIVVLTKTEFNPAPDKIVENAVAKNIINDIEPDKSIENFVDVNNIIHDHEHDIINDHNIDNSNNEEYQEIIPQISKKAIVDKKSKKTLLSRHQCDQCERYFSTGYCLRRHIQTVHCDYENLKCHVCEETFVWPSLLMTHKCIRAPIPEMPFDDARPEIHFDNLNMIEMLNQQAAQELQELNGIAEDDYMNCVDFEIPAPIVQLTEYENNVIPNNVFVNHGHGVLNGSRMVNGNTGLSVVSHSPSVVGHSPSVVDHSPLVVDHSPLIAGHSPSVAGHGYIMSEHSPTIAGHSYASHGPTAIGNGRTLGKDVAAPVKSVGYKVVMQEVPIEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -