Yseq024403.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000870.1:758008-775461[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.7 3.5e+02 3.1 2.5 2 23 213 234 212 234 0.96 2 10 0.13 13 7.7 3.6 1 23 241 264 241 264 0.91 3 10 0.00019 0.018 16.6 6.4 1 23 295 318 295 318 0.97 4 10 0.0045 0.43 12.3 0.2 2 23 323 345 323 345 0.93 5 10 0.0047 0.45 12.2 0.1 2 22 358 378 358 382 0.92 6 10 0.31 30 6.5 0.1 2 23 441 463 440 463 0.95 7 10 0.012 1.1 11.0 0.7 3 23 480 499 478 499 0.94 8 10 3.9e-05 0.0037 18.8 2.4 1 23 505 527 505 527 0.98 9 10 0.012 1.2 10.9 0.8 1 23 532 555 532 555 0.96 10 10 0.014 1.3 10.7 5.1 1 23 561 584 561 584 0.93
Sequence Information
- Coding Sequence
- ATGTTCCAGTTATCTCTACAAAATGTGCAGAAAATAGACCGAAAAAAAAACAACCTTCTATCTAAACTTCAAAATCAATATGTAGCACCAGATCACTATAACAAACATTATGTTTTTGACGATCACCAAATTGAAGAGCCCCAGAATGATCCTGAACCTAATAGCATAAGAGATGAGGAAATAAAACAAGAAATTGTACCTTCAAACATTGCTGATGATGATAATTTAGACCAAGATGATTACGCTGACCCTATTGAAGTTTTAGAACCTAACGACTTGCCTGCTGTGCCATCAGACATTGAGAAACCAATAGAAACGCACAAAAGTGACGAAGAATCGAGAGTAAACAAGAAAAAAAGCACAAAGGCAAAGAAAGTTAAATTAAAAAAGGTTAGCAAGAAGAAAAATCCAAAGAAAGAAAATTACAAACCAAAAAAAGCTGTAAAAACATCTACAATAGTCAATGATGAAAACAAAGAAGTGAAAAAACGGAGAAAGAAAACCGAGAAAGTACAAACAGAAGTTCAAATGAAGATGGATGAGTATTTCACGGTGACGATATTTAAGACTTTGGAAGAGAAAATAGAAGAGTTGCAGAAGAGAAAAGAGAACTCTTCTTACATGAATGCCCCGCTGAAATGTCAGTATTGTTTCCAAGGATATCTGGACAATGAAACTTATGATCAACACATGCATAAACATACAGATAACTACGGCGGCTTCATCTGCACTGTGTGTCAGTACCGGTGTCCGTCTAAGGAGCGACTGAGACAGCACCTATATTTCCGTCACTCGCGCAAGTTCCATTGCAAAGTGTGCCGGTTCGAGTCCCATGACAAATACCGCGCGACGTTGCATATGAAGTTTCACGAAGGGAAAACGTACAAATGTAAACATTGCGAGAAAGTGTTCAATCATATAGTGAACCTCCACAACCACTTGAGAGCTAAACACCCGACAGACAACGTGTGTGAGATGTGCGGGTACTCGTTCATAGGAGAACGAGGACTCAAGACGCATCGCAGCCTTACACACGGACATCACCTTACACATGTTCCAGCCGACGCTCCGTCGTGCACAGAATGCAACGTCCGGTTCATATCGGAGGACGCGCTACAGATGCACCTCAAGGTGTCCCCGCGGCACGGGAAGACTGTTGAGAACTTCAAGAAACGCAACTATCACCAACTGCACCGCTCTATCAAATGTTCTGGCGAGAACAAGCCGCGACGAGACAGGGAGGTGAAGATAACGAGGAAGCGGGACGGCATCAGAGTCGAGAAGAGAGAGATCCGACTCACCAAGTTTGATGAACCTGTGCCTTGTGAGAAGTGCGGTATCGAGATCCCGTCGGCATCGGAGTACCATTACCACTTCAAGCGCGCGCACCCCAACGAGAAGCGCAGCTGGTACCCCACCGACACGCACCCCCATCTGTGTGACGTGTgtggcaagatgctcaggAACAACGCGTTGAAGGACCACATGTTGGAGCACGTGGAAGGCGCCACATTCTCGTGTGACACCTGCGGGAAGAAGTTCAACAAGAAGTTCAATATGAAACTGCACGCTAGGGTGCATCTGGGAGAGAGGTACCCGTGTGTGGTGTGCGGGAAGCTCTTCAACCACATGGGTAACAGAGACCGACATCTTAAATACGTGCACACCGAATCGAAGGACTTTAAATGTGAATTCTGTGGAAAATGCTTCAAAAACGATGGCGCAAGGAAACTTCACACGAACCACGTCCATCTGAGAAAACCGTACCCGAAACGGAATAGGAACAGAGAGGGACAGGTAGACGCGGCGAGGCGAAGACAGAAGGAGACGGATGGAGAAGAAAACATGTCGACGTTTAGAAGTGATTGTAGTGATTTGTGGGAATAA
- Protein Sequence
- MFQLSLQNVQKIDRKKNNLLSKLQNQYVAPDHYNKHYVFDDHQIEEPQNDPEPNSIRDEEIKQEIVPSNIADDDNLDQDDYADPIEVLEPNDLPAVPSDIEKPIETHKSDEESRVNKKKSTKAKKVKLKKVSKKKNPKKENYKPKKAVKTSTIVNDENKEVKKRRKKTEKVQTEVQMKMDEYFTVTIFKTLEEKIEELQKRKENSSYMNAPLKCQYCFQGYLDNETYDQHMHKHTDNYGGFICTVCQYRCPSKERLRQHLYFRHSRKFHCKVCRFESHDKYRATLHMKFHEGKTYKCKHCEKVFNHIVNLHNHLRAKHPTDNVCEMCGYSFIGERGLKTHRSLTHGHHLTHVPADAPSCTECNVRFISEDALQMHLKVSPRHGKTVENFKKRNYHQLHRSIKCSGENKPRRDREVKITRKRDGIRVEKREIRLTKFDEPVPCEKCGIEIPSASEYHYHFKRAHPNEKRSWYPTDTHPHLCDVCGKMLRNNALKDHMLEHVEGATFSCDTCGKKFNKKFNMKLHARVHLGERYPCVVCGKLFNHMGNRDRHLKYVHTESKDFKCEFCGKCFKNDGARKLHTNHVHLRKPYPKRNRNREGQVDAARRRQKETDGEENMSTFRSDCSDLWE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -