Basic Information

Insect: Ypsolopha sequella
Gene Symbol: -
Assembly: GCA_934041175.1
Location: CAKOGU010000380.1:44075-85809[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0052 0.49 12.1 6.1 1 23 562 584 562 584 0.99

2 6 0.14 14 7.5 2.5 1 23 602 625 602 625 0.91

3 6 0.068 6.4 8.6 0.6 2 19 632 649 631 653 0.94

4 6 0.00011 0.01 17.3 0.4 2 23 661 683 661 683 0.92

5 6 7.1e-05 0.0068 17.9 7.1 1 23 690 712 690 712 0.96

6 6 2.6e-05 0.0024 19.3 0.1 1 23 717 739 717 739 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0052	0.49	12.1	6.1	1	23	562	584	562	584	0.99
2	6	0.14	14	7.5	2.5	1	23	602	625	602	625	0.91
3	6	0.068	6.4	8.6	0.6	2	19	632	649	631	653	0.94
4	6	0.00011	0.01	17.3	0.4	2	23	661	683	661	683	0.92
5	6	7.1e-05	0.0068	17.9	7.1	1	23	690	712	690	712	0.96
6	6	2.6e-05	0.0024	19.3	0.1	1	23	717	739	717	739	0.99

Sequence Information

Coding Sequence: ATGGCTCTTTGTGAAAGTCAACTGGACTCGGCTCTGCCGTCCATCAGCAGGGAAGAGCGGGATGACTCCTCTGAACGACAGACTCCTCAGGAGACTGGCGGCGAGGAGAGGCGCAACAGTCAGCCAAATGAAAAAATCTTTGGAGGTGCTATGCCGCTCAGCGTGGACTATCGGTCCCCGGTCTCTCACTTCATTCCACCGGCTGTCGAGCTCTACGCCAATAAGAATAAGCCAGAGCCTATATCTACAGAGTCGAGTTCGTCCCCCACGCCGGTGAAGCGGGGCCGCGGGCGGCCGCGGGTCGACAAGTCGTCGCCCGAGTACCTCGCGCAAGCTCGGGCTAGAAAACAGGCCAGGGAGATGGCGGCCATGATGAACAACTCGAGTGAAACCGGGGAGAAGCGCAAGCGAGGCCGGCCGCGCATAGACAAGACCAGCCCGGAGTACCTCGCCAGGAAGAGAGCCAAGGAGTTAGAAGCTTTAGAGAAGAAGGCGAAGAGGCAATACAAACGGCGCGGCACTGGAGTAATTAACGTTTTATTCAGTGTCATTATTGCATCCGAAAGTTTGAGAACCGCTTGTCACGCCATCACCGTAACATCCATCTCTATATATTCCCAACACCTAGCCAAAATAATGCCTTCGAAGTCAACGGTGCTCCAATCGCGGCCGGTAAAGCGGGTCCCGGCGACTTCCAAGACAAAAATACTAAGGAAAATCCCACAAAAAGTCGGGAGCACTACTAAGAAAATCCCACAAAAAGTCGGGAGCACAGCTAAGAAAGTCCCGCAAAAAGTCGGGAATGCGGCGATGAAAAAGGCGGCTGATAAAAAAGTCGTTCTAAGAAGGAACGCTAAGTTTGTTAAACGAAAAAAAGACTCTGCAGCCTCCTCGTCTAACGACGGGACCCCGCGCGTGAAGCGTAAATACACCAAGAGGGCCCCCGGTACGGGGCCCCAGCCCGGCCGGCCCAGGAAGGACCAGACGAATGCGTCCGGTGAACGAGCGAAGGGCAAGCGCGGGCGGCCCCGGAAGGCGGACCTGATCGCTGCAGGACTACTGCCGGCCGACGGCAACCGGACCTCACAGCCAGCCACGATCCGCGTCCGGAACAACTTGATGCCGATCAACTCCGAGCCGATCAGCCTCGACAGCGACGACGAGCCAGACCTCGGGTCGCCGAGCGTCGCGTCGGACTCCCTCTCGCTAGACGAGAACCTGCGAGCATTAAGACACATTCACGAGAAGTACGCCAACTTGGATAGAGACGACGCGTTTAACGCGCAGCTACTCGCCGCCAACTGCAAGCAGCGAGGAGAGAGGCCGAGCGGTGGCGCGGGACTCGACGCACGCGTGGAGAAGCTCGAAGACAGCTCTGGGTCTGACTCCGATAGCTCCAGCTCGGGATCCGGTTCAGGGTCTTCCAGCTCGTCATCGTCGTCGTCCTCGGGCAGTAGCTCGTCATCATCGAGCTCCGACTCTGACAGCGAGGTTGAGGACAAGAAGAACCACCCTGCACCGCCGCCGCAGGAGCAGAACAACTCCAATCACGATGACAGATCTTTCGGCGCGTGGTCCGCGGGCGCCGGCTCGGACTCGGACTCGGACCCGGAGCGGCTCCCCGCGCCCGCGTCCCCCGCGCGGTCCATCTCCGAGTCCGAGAACGAGTCGCCCGACAAGAGCTTCCAGTGCCATCACTGCCGCAAGTGGTACTCTACACGAGTCACGCTCAAGATTCACCGACGCGTGCACTTGAACCGCGGTGGGTCCGGTCAGAGGTCGCGCGCGCGCTCCAGCGACCGGTACGAGTGTGACTGCTGCAGCGCCACCTTCAGTCGCCGGGAGACATTGCTGCATCACAAAGCGGAGGCGCACCGCGGCTCGATGACGGTGCGCTGCGAGGTGTGCCGCAAGTGCTTCGAGGATGACGCTGAGCTCGCTCAACACGACACACTGCACACCGCCGACGAGCGACAAGGTCGCTGCTCGGACTGCGGCTCAATGTTCTCGCGGTACGAGCAGCTGCGGCGGCACCGCGCGGCGGCGCACGGGCACGCGGCGCACGCGCACTCGTGCCCGCAGTGCGGCAAGGGGTTCAGCCACGCGCACAGCCTCACGCGCCATTTGCACAACCACGCGCGCACCGCCTACAAGTGTGTCGTCTGCAAGGCGTCGTTCGCGCGAGCCGATCAGCTGGCACAACATCTCAACAGCCACCTCGCCAACTACAAACGGCTCAAACCGTAA
Protein Sequence: MALCESQLDSALPSISREERDDSSERQTPQETGGEERRNSQPNEKIFGGAMPLSVDYRSPVSHFIPPAVELYANKNKPEPISTESSSSPTPVKRGRGRPRVDKSSPEYLAQARARKQAREMAAMMNNSSETGEKRKRGRPRIDKTSPEYLARKRAKELEALEKKAKRQYKRRGTGVINVLFSVIIASESLRTACHAITVTSISIYSQHLAKIMPSKSTVLQSRPVKRVPATSKTKILRKIPQKVGSTTKKIPQKVGSTAKKVPQKVGNAAMKKAADKKVVLRRNAKFVKRKKDSAASSSNDGTPRVKRKYTKRAPGTGPQPGRPRKDQTNASGERAKGKRGRPRKADLIAAGLLPADGNRTSQPATIRVRNNLMPINSEPISLDSDDEPDLGSPSVASDSLSLDENLRALRHIHEKYANLDRDDAFNAQLLAANCKQRGERPSGGAGLDARVEKLEDSSGSDSDSSSSGSGSGSSSSSSSSSSGSSSSSSSSDSDSEVEDKKNHPAPPPQEQNNSNHDDRSFGAWSAGAGSDSDSDPERLPAPASPARSISESENESPDKSFQCHHCRKWYSTRVTLKIHRRVHLNRGGSGQRSRARSSDRYECDCCSATFSRRETLLHHKAEAHRGSMTVRCEVCRKCFEDDAELAQHDTLHTADERQGRCSDCGSMFSRYEQLRRHRAAAHGHAAHAHSCPQCGKGFSHAHSLTRHLHNHARTAYKCVVCKASFARADQLAQHLNSHLANYKRLKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -