Yseq002234.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000055.1:62717-91758[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.4 5.2e+02 2.6 0.4 1 23 267 290 267 290 0.90 2 17 0.9 85 5.0 1.3 1 23 324 346 324 346 0.97 3 17 0.00021 0.019 16.5 1.1 1 20 353 372 353 374 0.94 4 17 0.0059 0.56 11.9 0.8 2 21 381 400 381 401 0.92 5 17 0.00012 0.011 17.2 0.2 2 23 419 440 418 440 0.94 6 17 0.00026 0.025 16.1 0.2 1 23 445 467 445 467 0.98 7 17 0.00026 0.025 16.2 4.4 1 21 476 496 476 497 0.96 8 17 0.0023 0.22 13.2 3.3 1 23 509 532 509 532 0.90 9 17 0.011 1.1 11.0 0.2 1 23 538 561 538 561 0.96 10 17 0.037 3.5 9.4 0.4 3 19 575 591 573 592 0.89 11 17 0.58 55 5.6 2.9 1 21 605 625 605 628 0.94 12 17 0.58 55 5.6 2.9 1 21 663 683 663 686 0.94 13 17 0.58 55 5.6 2.9 1 21 721 741 721 744 0.94 14 17 0.58 55 5.6 2.9 1 21 779 799 779 802 0.94 15 17 0.58 55 5.6 2.9 1 21 837 857 837 860 0.94 16 17 0.58 55 5.6 2.9 1 21 953 973 953 976 0.94 17 17 0.58 55 5.6 2.9 1 21 1011 1031 1011 1034 0.94
Sequence Information
- Coding Sequence
- ATGAATGAAATAAATATCAATATTGAAGGCTACAATGTGAACGGCATATGCGTTGGATGCTTAAATTTTAATCGTAAAATGTTCTATTTGGAAGAAGCTAAGGAATGCTTCAAGATCTTGGGAAACATCGACGTACCAGACGGGCTCACTATGCAGGTATGCTGGGAGTGTTCTGCTGCTGTGAGAGCCGTTGGCAGGTTCCAGGCTCAGATACTTAAATCCTATGATGTGCTGATGGACTACTCTAGTAAGCACACTTTCCTGAACTCTCCCAATGACCTTACTAAACATGCAACGCAACGGCTGTCCATCGTCAGATTATTTACATTGGTGAAGGAGAATGATGAAGAATCACCTCTTGATGTTGAAACAGAAACTGAAGATATGAAGCCAGTAATAGATGAGATCAAGATAGAAAACCATGAGCTTGATGATCACATCCTCATAGAAATCCCAAAAGACCCAGACAGTGATTCCTCACAGCACATTCCCGAGCAGCTGCCATTTTCTCCATTCAAGGATGAGGTCCAGGATATGTCCTCAGATGAGGACGTGCAGTTGTCGCAACTGAAGAAGAAGAAAGAGAAGAAAGACAGGAGTAAAAGGGAGAGGAAGGATAGAGGGAAGAAGAAAAAAGAAAAAGACCGACCAAAAGACCTGAAGGACCAACAACCGAAAACGTACAGGAAACTCAAGAACCTTCCAGAAGAAATAGTGGAGTTGTACACGATGGATGAGCAGGAAATGTGGATGGTCAGGCAGCAAGATGTGGAGAACAAGGAGTTCGCTAAACTGAAGTATAGCTGTGATAAATGCATCATCGGGTTCAATAGTGAGAAGCTAATGACTGACCATAAGTTGGGCAAGCATCAGCCGAAATCTGAGTCAAGCCACCAGTGCGACGTGTGTCAATCCTACATACTGACAGCGGACAATGTATCCGTGCATCGCGCTCTCCATCTAGTGGCGTTTAGGTGTAAACTGTGCGAGTACAGGACCGGACTGAAACGACTCATGATGAAACATGTCAACCTACACGATGAAAAGACTGATAACTTTACCTGTAACCTCTGTGAGAAAGTTTTTAGTACAAAATCGAAGCTGTCATATCACAAAAGTATTTGCAAGCAGGAGAAGCCTCAGTGTGATTGTTGCGGGAAGGTGTTTGCGAACAAAGTCACTCTCAAGTACCATCTCAAGGTGATCCCCAGCGCAGAAAGGTCTGAAAGTAAGCCGAAGGAAAATATACGGATTCCGTGCAAAGGGTGCGATAAGGTGTTCTACTCGAAAAAGAGTTATCGAGCACACGTCGTTATCCACGACGGACTGGAGTACCCGTGCCCGGTGTGCGGGAAGCTGTTTCAATGGAAGCGGAACCTGGCGCGCCACCTGCGCAACCACGCCGAGAGGGAAGCCGGCGCCAAGCACGAGTGCAGGCAGTGCGGGAAACGGTTTAGCAGCAGAGATTGCCTCAGCAATCACATGCGGTTCAGCAAGAGACACGTCTCCGAAGAAGCATTTGTCCACGAGTGCCACTACTGTGGCAAGAAGTTCGCGACCAAATGGTGCATGATCGACCACGTCGACTGGGAGCATCTCAAGAAGATCAAGTACCAGTGCTCCGTTTGTCTAAAGGCGTTCAAAACGGCAAAGATAATGGTGGCGCATATGAACAATATACACGAGGGAAAGAAGAACAGGGAACCGGACGGAGAACATCTGTGCGAAATTTGTGGCAAGTCTTATAAAACAGTGAAACGTCTGAAAGGGCACGTGTGGGCGATGCACACTCACAGGTCCACAGTGAAGAGCTACAAGTGTAAACTGTGTCCCGCGACCTTCACGTGGCAGACCTCCATATACAAACACATGAAGTGTATGCACGACAACACCAAGAGAGGGGCTAAGGTCAGTGGAACTATCCTAATACTAACTGCACACTCACAGGTCCACAGTGAAGAGCTACAAGTGTCCACAGTGAAGAGCTACAAGTGTAAACTGTGCCCCGCGACCTTCACGTGGCAGACCTCCATATACAAACACATGAAGTGTATGCACGACAACACCAAGAGAGGGGCTAAGGTCAGTGGAACTATCCTAATACTAACTGCACACTCACAGGTCCACAGTGAAGAGCTACAAGTGTCCACAGTGAAGAGCTACAAGTGTAAACTGTGTCCCGCGACCTTCACGTGGCAGACCTCCATATACAAACACATGAAGTGTATGCACGACAACACCAAGAGAGGGGCTAAGGTCAGTGGAACTATCCTAATACTAACTGCACACTCACAGGTCCACAGTGAAGAGGTACAAGTGTCCACAGTGAAGAGCTACAAGTGTAAACTGTGCCCCGCGACCTTCACGTGGCAGACCTCCATATACAAACACATGAAGTGTATGCACGACAACACCAAGAGAGGGGCTAAGGTCAGTGGAACTATCCTAATACTAACTGCACACTCACAGGTCCACAGTGAAGAGCTACAAGTGTCCACAGTGAAGAGCTACAAGTGTAAACTGTGCCCCGCGACCTTCACGTGGCAGACCTCCATATACAAACACATGAAGTGTATGCACGACAACACCAAGAGAGGGGCTAAGGTCAGTGGAACTATCCAAATACTAACTGCACACTCACCGGTCCACAGTGAAGAGCTACAAGTGTCCACAGTGAAGAGCTACAAGTGTAAACTGTGCCCCGCGACCTTAACGTGGCAGACCTCCATATACAAACACATGAAGTGTATGCACGACAACACCAAGAGAGGGGCTAAGGTCAGTGGAACTATCCAAATACTAACTGCACACTCACCGGTCCACAGTGAAGAGCTACAAGTGTCCACAGTGAAGAGCTACAAGTGTAAACTGTGCCCCGCGACCTTCACGTGGCAGACCTCCATATACAAACACATGAAGTGTATGCACGACAACACCAAGAGAGGGGCTAAGGTCAGTGGAACTATCCTAATACTAACTGCACACTCACAGGTCCACAGTGAAGAGCTACAAGTGTCCACAGTGAAGAGCTACAAGTGTAAACTGTGTCCCGCGACCTTCACGTGGCAGACCTCCATATACAAACACATGAAGTGTATGCACGACAACACCAAGAGAGGGGCTAAGCAACAGCGGCTGTCTCAACCCAAAGCAGAGCCTTACGGCGGATTAGAACTGAACAACAGAATTCAATACTTTCAGAGCAACCTTGTGAACAATGTTGTGCAGAATATTGTTCAACAGAATGTACCAACTGTGGGTATCGTCCAGGAGTTGGTGTGA
- Protein Sequence
- MNEININIEGYNVNGICVGCLNFNRKMFYLEEAKECFKILGNIDVPDGLTMQVCWECSAAVRAVGRFQAQILKSYDVLMDYSSKHTFLNSPNDLTKHATQRLSIVRLFTLVKENDEESPLDVETETEDMKPVIDEIKIENHELDDHILIEIPKDPDSDSSQHIPEQLPFSPFKDEVQDMSSDEDVQLSQLKKKKEKKDRSKRERKDRGKKKKEKDRPKDLKDQQPKTYRKLKNLPEEIVELYTMDEQEMWMVRQQDVENKEFAKLKYSCDKCIIGFNSEKLMTDHKLGKHQPKSESSHQCDVCQSYILTADNVSVHRALHLVAFRCKLCEYRTGLKRLMMKHVNLHDEKTDNFTCNLCEKVFSTKSKLSYHKSICKQEKPQCDCCGKVFANKVTLKYHLKVIPSAERSESKPKENIRIPCKGCDKVFYSKKSYRAHVVIHDGLEYPCPVCGKLFQWKRNLARHLRNHAEREAGAKHECRQCGKRFSSRDCLSNHMRFSKRHVSEEAFVHECHYCGKKFATKWCMIDHVDWEHLKKIKYQCSVCLKAFKTAKIMVAHMNNIHEGKKNREPDGEHLCEICGKSYKTVKRLKGHVWAMHTHRSTVKSYKCKLCPATFTWQTSIYKHMKCMHDNTKRGAKVSGTILILTAHSQVHSEELQVSTVKSYKCKLCPATFTWQTSIYKHMKCMHDNTKRGAKVSGTILILTAHSQVHSEELQVSTVKSYKCKLCPATFTWQTSIYKHMKCMHDNTKRGAKVSGTILILTAHSQVHSEEVQVSTVKSYKCKLCPATFTWQTSIYKHMKCMHDNTKRGAKVSGTILILTAHSQVHSEELQVSTVKSYKCKLCPATFTWQTSIYKHMKCMHDNTKRGAKVSGTIQILTAHSPVHSEELQVSTVKSYKCKLCPATLTWQTSIYKHMKCMHDNTKRGAKVSGTIQILTAHSPVHSEELQVSTVKSYKCKLCPATFTWQTSIYKHMKCMHDNTKRGAKVSGTILILTAHSQVHSEELQVSTVKSYKCKLCPATFTWQTSIYKHMKCMHDNTKRGAKQQRLSQPKAEPYGGLELNNRIQYFQSNLVNNVVQNIVQQNVPTVGIVQELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -