Yseq021479.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000730.1:315412-319804[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.55 52 5.7 0.1 2 11 34 43 33 47 0.84 2 15 0.55 52 5.7 0.1 2 11 71 80 70 84 0.84 3 15 0.55 52 5.7 0.1 2 11 108 117 107 121 0.84 4 15 0.55 52 5.7 0.1 2 11 151 160 150 164 0.84 5 15 0.55 52 5.7 0.1 2 11 188 197 187 201 0.84 6 15 0.55 52 5.7 0.1 2 11 231 240 230 244 0.84 7 15 0.55 52 5.7 0.1 2 11 274 283 273 287 0.84 8 15 0.55 52 5.7 0.1 2 11 317 326 316 330 0.84 9 15 0.54 51 5.7 0.2 2 11 360 369 359 371 0.87 10 15 0.55 52 5.7 0.1 2 11 418 427 417 431 0.84 11 15 0.55 52 5.7 0.1 2 11 461 470 460 474 0.84 12 15 0.55 52 5.7 0.1 2 11 504 513 503 517 0.84 13 15 0.55 52 5.7 0.1 2 11 547 556 546 560 0.84 14 15 2.3e-05 0.0022 19.5 1.3 2 23 590 611 589 611 0.97 15 15 0.00024 0.023 16.3 1.5 1 23 617 640 617 640 0.98
Sequence Information
- Coding Sequence
- ATGCCCATATGGGATTGTAAAGAGTACTTCTTGAACCGCACGCGCTACTTGGAGCACCGCAAGTACCAGCACGACGGGTTCAAACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCACGATGTGTTGAACTGCACCAAGTACCAGCACGAAGGGTTCAGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCACGATGTGTTGAACTGCACCAAGTACCAGCACGAAGGGTTCAGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCACGACTTGTTGAACTGCACGCGCTACTTGGAGCACCGCAAGTACCAGCACGACGGGTTCAAACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCACGATGTGTTGAACTGCACCAAGTACCAGCACGAAGGGTTCAGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCACGACTTGTTGAACTGCACGCGCTACTTGGAGCACCGCAAGTACCAGCACGAAGGGTTCAGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCAAGATGTGTTGAACTGCACGCGCTACTTGGAGCACAGCAAGTACCAGCACGAAGGGTTCAGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCAAGATGTGTTGAACTGCACGCGCTACTTGGAGCACAGCAAGTACCAGCACGAAGGGTTCAGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCACGACTTGTTGAACTGCACGCGCTACTTGGAGCACCGCAAGTACCAGCACGAAGGGTTCAGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCAAGATGTGTTGAACTGCACGCGCTACTTGGAGCACAGCAAGTACCAGCACGAAGGGTTCAGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCACGACTTGTTGAACTGCACGCGCTACTTGGAGCACCGCAAGTACCAGCACGAAGGGTTCAGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCAAGATGTGTTGAACTGCACGCGCTACTTGGAGCACAGCAAGTACCAGCACGAAGGGTTCAGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCACGACTTGTTGAACTGCACGCGCTACTTGGAGCACCGCAAGTACCAGCACGAAGGGTTCAGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGGTTAGTACCTTGTCATATCCTCAAGATGTGTTGAACTGCACGCGCTACTTGGAGCACAGCAAGTACCAGCACGAAGGGTTCAGACCGGAGAAGGACAAGGTCTGTCCTCACTGCGGGAAGCTGTTCGCGAGCAAGCGAGAGCTAGAACTTCATTCACGTACCCATACCAAAGAGAAACCATTCGAGTGTACCGTCTGCTTCTCAAGATTCTCTCAGAAGTCCGCAGTGAGGACGCATATGAAGCGGATACATCCGAGAGGGCAGGATGTCGCTTCTGCGCCGGGCAGCTCTTCTATTGCGCCCGAGTTATTGTCTATATAG
- Protein Sequence
- MPIWDCKEYFLNRTRYLEHRKYQHDGFKPEKDKVCPHCGKLFAVSTLSYPHDVLNCTKYQHEGFRPEKDKVCPHCGKLFAVSTLSYPHDVLNCTKYQHEGFRPEKDKVCPHCGKLFAVSTLSYPHDLLNCTRYLEHRKYQHDGFKPEKDKVCPHCGKLFAVSTLSYPHDVLNCTKYQHEGFRPEKDKVCPHCGKLFAVSTLSYPHDLLNCTRYLEHRKYQHEGFRPEKDKVCPHCGKLFAVSTLSYPQDVLNCTRYLEHSKYQHEGFRPEKDKVCPHCGKLFAVSTLSYPQDVLNCTRYLEHSKYQHEGFRPEKDKVCPHCGKLFAVSTLSYPHDLLNCTRYLEHRKYQHEGFRPEKDKVCPHCGKLFATGEGQGLSSLRKLFAVSTLSYPQDVLNCTRYLEHSKYQHEGFRPEKDKVCPHCGKLFAVSTLSYPHDLLNCTRYLEHRKYQHEGFRPEKDKVCPHCGKLFAVSTLSYPQDVLNCTRYLEHSKYQHEGFRPEKDKVCPHCGKLFAVSTLSYPHDLLNCTRYLEHRKYQHEGFRPEKDKVCPHCGKLFAVSTLSYPQDVLNCTRYLEHSKYQHEGFRPEKDKVCPHCGKLFASKRELELHSRTHTKEKPFECTVCFSRFSQKSAVRTHMKRIHPRGQDVASAPGSSSIAPELLSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -