Yseq021925.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- Znf784
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000748.1:237021-258704[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00029 0.027 16.0 1.8 1 23 230 252 230 253 0.94 2 9 0.26 25 6.7 5.6 2 23 261 282 260 282 0.95 3 9 0.34 32 6.4 0.3 1 19 286 304 286 306 0.92 4 9 0.00013 0.013 17.1 2.1 2 23 348 370 347 370 0.96 5 9 0.0073 0.69 11.6 1.3 2 22 385 405 385 409 0.92 6 9 0.0047 0.45 12.2 5.2 1 23 414 437 414 437 0.94 7 9 9.2e-05 0.0087 17.6 2.3 1 23 443 466 443 466 0.96 8 9 0.00092 0.087 14.4 0.1 3 23 478 498 477 498 0.97 9 9 0.00071 0.068 14.8 0.8 1 23 504 527 504 527 0.94
Sequence Information
- Coding Sequence
- ATGTTGGAGGACAACGATGAGGACGACGACAGTGGGGATGATGTAGAAGAAGTAGTAGCCTGCGTTCCATTATCTGATAACGATTCGACAGATGATGAGAAAGAAGAAGAGGCAAACGCTGAGGAACCACAACCAGGCCCGTCATGCCCAAAGAGGCACCGACATGAAATATTAAAATCTGGCGCCGCAATGGACGTGGAACATAAAGATATTTTAACTTATGTTGGAAACAGCAGCTTCGACTCAGTAAACGTCGTTGAACAGAGAGATGTCGAAAGTCAACAAAGACAAGTAAATAACATAAAAGTTGAAATAGACATCGACGGCGATGAATATTCTTCGGTCGATGTTACTGAACACGATATTGAAGATACTTTACTATCCATGGTAACAGGACCTATCCCTAAACCTACCGACTGCAGAAGAAAATTAAGCGAAGAAATTACGATCGAGCCAAGTACTTCAACTCGTGTCGAAGATGTCGAAGTGAGAACGAGCTCTGATTCTGATGAGTTTGATATGGATTTTCCCGAAGTGACGAAAAACAAAAAAACAACAAAAACATTAACAAACAAACCAAAAAAGAAGCCAGTAGAGAACGGCTGGCTAAACCTTTGGGTATCCGAAGAGCAAGCACACAGTTGGCATCTGAAAACCATAGAGCAGCAAACGTGCGCCGATGACACTTTCGTGTGTGATTTGTGCAAACAAGGATTCAAAGGGAAAGAAGACCTGAAGCGGCATCTTTTCTGGCATCATTATGATATTGCCGGAGGAGTATCGTGCAAAGTCTGTAAATACATATTCAAAAACCACCTCGCACTGCATCAGCACGCGAAACATCACTACACGCTTTACAAGTGTAACAGATGCGATTATCAAACCAGAGACCTGAATTTAATCCAAACCCATACAGGGCCAGAACACATAACTGTCGGCAATGAAGCCTGGCAAATGTCGACAGTCAGTCCGGTTACAATATTGAATCTCTGCAAGAAGTGTAAAATTTATTTCACATTTCACGATCAACATTTTTCATTAGAATGCAATATATGTAAACATAAATATAAAACGGCGGTAACACTGAAAACTCACATGCAAAGAGTACATAACTTGGAGAATCATATGGACAAAAATCAAGATAATGGGCCTTACTGTGAACAATGCGGCATATTCTTCAAACATATTAGTCAATACAAGGGTCATATCAAACGGAGTGCAAAACATGTGGCTGTTAGACATAAATGTCCCCACTGTGACCGGAATTTTTCGTGTCAAAAATACCTACAAAGTCACATCGGCATCATCCACCTTAACATACGCACGTTCAAATGCGAGAAATGTCCAAAGACGTTTTCGAAACGGCGGCGCTTGCAGCTGCATGTTTCAAAAGTTCACGATAAAACGTTTGTAGCCGTCCGAGACAAAATATGCGACGTGTGCGGGAAAGGATTTCTGGATAAATCCACGTTGGAAGAACATAAAAATGTCCACACGGGAGAGAGGCCGTTCAAGTGTCCGTTGTGCCCATCGACCTTCAGTTACAAGGCTTCCCTCTACACTCACAACAAGCTGGTCCATCTCAAGCAGAAGCGAGCTTGTGACCTGAAGAAGTTAAAGAAAAAACCAGAAGAGAATGTTTGA
- Protein Sequence
- MLEDNDEDDDSGDDVEEVVACVPLSDNDSTDDEKEEEANAEEPQPGPSCPKRHRHEILKSGAAMDVEHKDILTYVGNSSFDSVNVVEQRDVESQQRQVNNIKVEIDIDGDEYSSVDVTEHDIEDTLLSMVTGPIPKPTDCRRKLSEEITIEPSTSTRVEDVEVRTSSDSDEFDMDFPEVTKNKKTTKTLTNKPKKKPVENGWLNLWVSEEQAHSWHLKTIEQQTCADDTFVCDLCKQGFKGKEDLKRHLFWHHYDIAGGVSCKVCKYIFKNHLALHQHAKHHYTLYKCNRCDYQTRDLNLIQTHTGPEHITVGNEAWQMSTVSPVTILNLCKKCKIYFTFHDQHFSLECNICKHKYKTAVTLKTHMQRVHNLENHMDKNQDNGPYCEQCGIFFKHISQYKGHIKRSAKHVAVRHKCPHCDRNFSCQKYLQSHIGIIHLNIRTFKCEKCPKTFSKRRRLQLHVSKVHDKTFVAVRDKICDVCGKGFLDKSTLEEHKNVHTGERPFKCPLCPSTFSYKASLYTHNKLVHLKQKRACDLKKLKKKPEENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -